Wall clock time and date at job start Tue Mar 31 2020 13:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47436 * 2 1 4 4 H 1.08993 * 109.47162 * 305.90902 * 3 2 1 5 5 C 1.50693 * 109.47100 * 185.90134 * 3 2 1 6 6 H 1.08001 * 120.00603 * 240.00287 * 5 3 2 7 7 C 1.37881 * 119.99742 * 60.00423 * 5 3 2 8 8 N 1.31506 * 120.00044 * 359.97438 * 7 5 3 9 9 Si 1.86806 * 119.99945 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.46767 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46809 * 119.99664 * 9 7 5 12 12 H 1.48493 * 109.47129 * 239.99969 * 9 7 5 13 13 N 1.46906 * 109.47047 * 65.90493 * 3 2 1 14 14 C 1.46893 * 111.00042 * 200.62789 * 13 3 2 15 15 C 1.50699 * 109.46826 * 185.09391 * 14 13 3 16 16 O 1.21293 * 120.00433 * 355.20031 * 15 14 13 17 17 N 1.34787 * 119.99546 * 175.20118 * 15 14 13 18 18 C 1.45991 * 118.60033 * 0.83149 * 17 15 14 19 19 C 1.53182 * 108.86121 * 233.58343 * 18 17 15 20 20 S 1.81687 * 107.88966 * 294.37173 * 19 18 17 21 21 C 1.76404 * 102.56884 * 47.02343 * 20 19 18 22 22 C 1.39077 * 118.86295 * 164.09062 * 21 20 19 23 23 C 1.38053 * 120.28995 * 179.28297 * 22 21 20 24 24 C 1.38309 * 119.91153 * 0.03069 * 23 22 21 25 25 C 1.37991 * 120.17118 * 0.19207 * 24 23 22 26 26 C 1.39083 * 121.18832 * 343.75870 * 21 20 19 27 27 H 1.09006 * 109.46980 * 64.76369 * 1 2 3 28 28 H 1.09001 * 109.47308 * 184.76541 * 1 2 3 29 29 H 1.08998 * 109.47030 * 304.77049 * 1 2 3 30 30 H 1.09005 * 109.46928 * 239.99918 * 2 1 3 31 31 H 1.09001 * 109.46741 * 120.00356 * 2 1 3 32 32 H 0.97003 * 119.99944 * 180.02562 * 8 7 5 33 33 H 1.00908 * 110.99512 * 324.57990 * 13 3 2 34 34 H 1.09006 * 109.46722 * 305.08738 * 14 13 3 35 35 H 1.08999 * 109.47487 * 65.09213 * 14 13 3 36 36 H 1.08999 * 109.61150 * 353.38390 * 18 17 15 37 37 H 1.09000 * 109.60754 * 113.89533 * 18 17 15 38 38 H 1.08999 * 109.83169 * 174.72288 * 19 18 17 39 39 H 1.08996 * 109.71095 * 53.95747 * 19 18 17 40 40 H 1.08000 * 119.85497 * 359.31612 * 22 21 20 41 41 H 1.08005 * 120.04927 * 180.02562 * 23 22 21 42 42 H 1.07999 * 119.91506 * 180.18041 * 24 23 22 43 43 H 1.08006 * 119.76993 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5930 1.9859 -0.8323 5 6 3.5399 1.4449 -0.1461 6 1 4.1568 1.8853 0.6233 7 6 4.1248 0.8848 -1.2621 8 7 3.3737 0.3481 -2.1987 9 14 5.9840 0.8884 -1.4435 10 1 6.5954 1.5471 -0.2613 11 1 6.4746 -0.5099 -1.5394 12 1 6.3598 1.6303 -2.6737 13 7 1.6702 2.0926 1.2644 14 6 1.6900 3.5552 1.1297 15 6 1.4291 4.1869 2.4728 16 8 1.1588 3.4904 3.4284 17 7 1.4961 5.5258 2.6122 18 6 1.8057 6.3361 1.4379 19 6 2.9978 7.2419 1.7616 20 16 2.4751 8.4141 3.0477 21 6 1.6694 7.3671 4.2167 22 6 1.4268 7.8526 5.4972 23 6 0.7850 7.0637 6.4309 24 6 0.3817 5.7847 6.0929 25 6 0.6227 5.2936 4.8260 26 6 1.2719 6.0787 3.8757 27 1 -0.3633 0.4382 -0.9296 28 1 -0.3634 -1.0241 0.0854 29 1 -0.3633 0.5861 0.8442 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.7852 -0.0463 -2.9836 33 1 0.7695 1.7712 1.5862 34 1 2.6657 3.8731 0.7621 35 1 0.9177 3.8658 0.4259 36 1 2.0589 5.6854 0.6009 37 1 0.9430 6.9500 1.1793 38 1 3.3021 7.7863 0.8677 39 1 3.8290 6.6391 2.1274 40 1 1.7412 8.8512 5.7622 41 1 0.5982 7.4448 7.4241 42 1 -0.1229 5.1686 6.8223 43 1 0.3053 4.2937 4.5691 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000569589576.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:23 Heat of formation + Delta-G solvation = 3.933872 kcal Electronic energy + Delta-G solvation = -24806.957050 eV Core-core repulsion = 21364.390302 eV Total energy + Delta-G solvation = -3442.566748 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.16441 -39.49103 -37.96351 -37.46175 -34.49432 -33.12966 -32.41083 -31.87720 -30.93151 -28.93575 -27.07002 -24.94864 -24.62656 -23.95141 -23.15921 -21.50346 -20.76555 -18.68800 -18.61079 -18.32739 -18.00587 -17.21007 -16.74867 -16.69145 -15.94087 -15.80839 -15.61929 -15.47790 -14.93646 -14.66538 -14.52121 -14.25641 -14.14560 -13.98839 -13.68879 -13.61132 -13.49324 -13.15683 -12.96381 -12.77543 -12.69742 -12.52679 -12.16546 -12.00791 -11.71510 -11.50592 -11.38431 -11.27798 -11.04354 -10.61303 -10.45233 -10.34350 -9.22040 -9.07939 -8.37741 -8.07739 -6.19576 0.08112 0.33697 0.50328 1.25679 1.39980 1.41441 1.44855 1.54574 1.57066 2.43857 2.73297 3.16347 3.23001 3.47051 3.62760 3.90069 3.91877 4.03095 4.13366 4.29884 4.36699 4.39251 4.44510 4.50886 4.51313 4.55885 4.57579 4.67885 4.72152 4.92991 5.03385 5.08977 5.21334 5.31362 5.34198 5.47857 5.55468 5.58297 5.73260 5.85993 5.94493 6.06793 6.32468 6.40855 6.83544 6.92856 6.94328 7.49639 8.95666 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.015773 B = 0.003592 C = 0.003154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.786947 B = 7794.132849 C = 8875.267150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.120 4.120 3 C 0.229 3.771 4 H -0.016 1.016 5 C -0.514 4.514 6 H 0.048 0.952 7 C 0.017 3.983 8 N -0.915 5.915 9 Si 0.952 3.048 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.277 1.277 13 N -0.681 5.681 14 C 0.057 3.943 15 C 0.515 3.485 16 O -0.525 6.525 17 N -0.557 5.557 18 C 0.089 3.911 19 C -0.120 4.120 20 S -0.115 6.115 21 C -0.135 4.135 22 C -0.087 4.087 23 C -0.124 4.124 24 C -0.107 4.107 25 C -0.170 4.170 26 C 0.132 3.868 27 H 0.043 0.957 28 H 0.056 0.944 29 H 0.050 0.950 30 H 0.073 0.927 31 H 0.031 0.969 32 H 0.261 0.739 33 H 0.333 0.667 34 H 0.106 0.894 35 H 0.074 0.926 36 H 0.127 0.873 37 H 0.106 0.894 38 H 0.161 0.839 39 H 0.087 0.913 40 H 0.149 0.851 41 H 0.159 0.841 42 H 0.144 0.856 43 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.685 16.642 9.361 19.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.159 4.159 3 C 0.121 3.879 4 H 0.002 0.998 5 C -0.552 4.552 6 H 0.066 0.934 7 C -0.182 4.182 8 N -0.555 5.555 9 Si 0.778 3.222 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.315 5.315 14 C -0.075 4.075 15 C 0.306 3.694 16 O -0.402 6.402 17 N -0.280 5.280 18 C -0.033 4.033 19 C -0.268 4.268 20 S 0.126 5.874 21 C -0.250 4.250 22 C -0.110 4.110 23 C -0.144 4.144 24 C -0.127 4.127 25 C -0.191 4.191 26 C 0.032 3.968 27 H 0.062 0.938 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.091 0.909 31 H 0.050 0.950 32 H 0.071 0.929 33 H 0.152 0.848 34 H 0.123 0.877 35 H 0.092 0.908 36 H 0.144 0.856 37 H 0.125 0.875 38 H 0.178 0.822 39 H 0.106 0.894 40 H 0.167 0.833 41 H 0.176 0.824 42 H 0.162 0.838 43 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -4.917 17.343 9.771 20.505 hybrid contribution 0.130 -1.540 -0.844 1.761 sum -4.787 15.804 8.927 18.772 Atomic orbital electron populations 1.21759 0.96339 1.01247 1.00410 1.21578 0.94209 0.98966 1.01148 1.18951 0.94280 0.90814 0.83848 0.99830 1.21416 0.92557 1.37334 1.03931 0.93408 1.25580 1.01845 0.95145 0.95594 1.69980 1.36056 1.39611 1.09813 0.85608 0.81143 0.77613 0.77828 1.19874 1.21069 1.20250 1.60255 1.35255 1.02811 1.33136 1.21757 1.03591 0.90727 0.91447 1.21380 0.75305 0.81078 0.91667 1.90385 1.46670 1.62415 1.40715 1.45528 1.67336 1.06877 1.08309 1.22284 0.98587 0.95409 0.87058 1.24121 1.00327 1.00356 1.02035 1.85286 1.69271 1.13360 1.19444 1.21431 1.07280 0.96458 0.99796 1.21009 0.99022 1.00868 0.90089 1.21424 0.98732 0.93750 1.00474 1.21455 0.99056 0.96341 0.95860 1.22718 0.99288 1.02820 0.94253 1.17804 0.99410 0.93667 0.85882 0.93771 0.92447 0.93060 0.90905 0.95047 0.92939 0.84807 0.87660 0.90820 0.85557 0.87546 0.82177 0.89387 0.83341 0.82359 0.83777 0.82300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.18 9.82 71.98 0.71 -4.47 16 2 C -0.12 -5.58 5.39 30.59 0.16 -5.42 16 3 C 0.23 10.91 2.02 44.17 0.09 11.00 16 4 H -0.02 -0.80 7.92 -2.39 -0.02 -0.82 16 5 C -0.51 -27.31 8.32 25.60 0.21 -27.10 16 6 H 0.05 2.62 7.81 -2.91 -0.02 2.60 16 7 C 0.02 0.92 5.29 84.66 0.45 1.37 16 8 N -0.91 -50.17 11.29 21.45 0.24 -49.92 16 9 Si 0.95 42.54 29.54 68.60 2.03 44.57 16 10 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 11 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 12 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 13 N -0.68 -28.48 5.86 -499.48 -2.92 -31.40 16 14 C 0.06 1.95 4.26 85.56 0.36 2.32 16 15 C 0.51 17.29 7.56 87.65 0.66 17.96 16 16 O -0.53 -20.63 12.52 -3.07 -0.04 -20.67 16 17 N -0.56 -15.62 2.88 -631.67 -1.82 -17.44 16 18 C 0.09 1.80 6.10 86.54 0.53 2.33 16 19 C -0.12 -2.17 6.66 72.04 0.48 -1.69 16 20 S -0.11 -2.39 22.12 -56.49 -1.25 -3.64 16 21 C -0.13 -3.42 6.07 22.67 0.14 -3.28 16 22 C -0.09 -1.85 9.72 22.43 0.22 -1.63 16 23 C -0.12 -2.42 10.05 22.24 0.22 -2.19 16 24 C -0.11 -2.51 10.03 22.23 0.22 -2.29 16 25 C -0.17 -5.12 8.70 22.47 0.20 -4.92 16 26 C 0.13 3.86 6.33 38.34 0.24 4.11 16 27 H 0.04 1.61 8.14 -2.38 -0.02 1.59 16 28 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.05 1.73 6.32 -2.39 -0.02 1.72 16 30 H 0.07 3.81 5.93 -2.38 -0.01 3.79 16 31 H 0.03 1.48 8.14 -2.39 -0.02 1.47 16 32 H 0.26 13.68 8.31 -92.71 -0.77 12.91 16 33 H 0.33 13.21 6.33 -89.69 -0.57 12.65 16 34 H 0.11 3.67 6.97 -2.38 -0.02 3.65 16 35 H 0.07 2.19 8.02 -2.39 -0.02 2.17 16 36 H 0.13 2.31 5.56 -2.39 -0.01 2.30 16 37 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.16 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.15 2.46 8.06 -2.91 -0.02 2.44 16 41 H 0.16 1.97 8.06 -2.91 -0.02 1.95 16 42 H 0.14 2.70 8.06 -2.91 -0.02 2.68 16 43 H 0.16 5.51 4.72 -63.08 -0.30 5.21 16 Total: -1.00 -64.81 352.76 1.31 -63.50 By element: Atomic # 1 Polarization: 28.74 SS G_CDS: 0.18 Total: 28.92 kcal Atomic # 6 Polarization: -18.81 SS G_CDS: 4.90 Total: -13.91 kcal Atomic # 7 Polarization: -94.26 SS G_CDS: -4.50 Total: -98.76 kcal Atomic # 8 Polarization: -20.63 SS G_CDS: -0.04 Total: -20.67 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Atomic # 16 Polarization: -2.39 SS G_CDS: -1.25 Total: -3.64 kcal Total: -64.81 1.31 -63.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569589576.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.434 kcal (2) G-P(sol) polarization free energy of solvation -64.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds