Wall clock time and date at job start Tue Mar 31 2020 13:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53003 * 109.47267 * 2 1 4 4 H 1.08999 * 109.47029 * 54.99812 * 3 2 1 5 5 C 1.50701 * 109.46979 * 174.99862 * 3 2 1 6 6 H 1.08000 * 119.99584 * 120.00385 * 5 3 2 7 7 C 1.37882 * 119.99911 * 299.99695 * 5 3 2 8 8 N 1.31518 * 119.99699 * 180.02562 * 7 5 3 9 9 Si 1.86800 * 120.00068 * 0.02562 * 7 5 3 10 10 H 1.48493 * 109.46820 * 89.99905 * 9 7 5 11 11 H 1.48501 * 109.46713 * 210.00004 * 9 7 5 12 12 H 1.48495 * 109.46916 * 329.99720 * 9 7 5 13 13 O 1.42893 * 109.47083 * 294.99942 * 3 2 1 14 14 C 1.34933 * 117.00442 * 89.99770 * 13 3 2 15 15 O 1.21653 * 119.99679 * 0.02562 * 14 13 3 16 16 C 1.41776 * 120.00246 * 180.02562 * 14 13 3 17 17 C 1.35103 * 119.99568 * 187.30469 * 16 14 13 18 18 C 1.46957 * 120.00298 * 10.54025 * 17 16 14 19 19 C 1.39978 * 120.09645 * 44.10649 * 18 17 16 20 20 C 1.37734 * 119.97610 * 180.27783 * 19 18 17 21 21 C 1.38881 * 120.17172 * 359.72206 * 20 19 18 22 22 O 1.35816 * 119.90087 * 179.97438 * 21 20 19 23 23 C 1.42906 * 116.99770 * 359.97438 * 22 21 20 24 24 C 1.39447 * 120.19467 * 359.97438 * 21 20 19 25 25 O 1.35991 * 119.98609 * 180.02562 * 24 21 20 26 26 C 1.42901 * 117.00101 * 179.97438 * 25 24 21 27 27 C 1.38074 * 120.02288 * 0.02562 * 24 21 20 28 28 H 1.09008 * 109.47377 * 60.00277 * 1 2 3 29 29 H 1.09004 * 109.47575 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47718 * 300.00409 * 1 2 3 31 31 H 1.09005 * 109.47486 * 240.00047 * 2 1 3 32 32 H 1.09007 * 109.47049 * 120.00159 * 2 1 3 33 33 H 0.96998 * 119.99859 * 179.97438 * 8 7 5 34 34 H 1.07997 * 119.99902 * 7.30151 * 16 14 13 35 35 H 1.07996 * 119.99782 * 190.54276 * 17 16 14 36 36 H 1.07999 * 120.01428 * 0.02911 * 19 18 17 37 37 H 1.07999 * 119.91697 * 179.70290 * 20 19 18 38 38 H 1.09005 * 109.46766 * 180.02562 * 23 22 21 39 39 H 1.08996 * 109.47193 * 300.00013 * 23 22 21 40 40 H 1.09000 * 109.47101 * 60.00010 * 23 22 21 41 41 H 1.08997 * 109.47656 * 179.97438 * 26 25 24 42 42 H 1.08998 * 109.47459 * 300.00506 * 26 25 24 43 43 H 1.09008 * 109.46644 * 60.00483 * 26 25 24 44 44 H 1.08005 * 120.08664 * 180.02562 * 27 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4442 0.1239 6 1 4.1471 1.8888 -0.6523 7 6 4.1432 0.8783 1.2281 8 7 5.4539 0.8803 1.3364 9 14 3.0962 0.1089 2.5702 10 1 2.8754 -1.3271 2.2635 11 1 3.7935 0.2349 3.8752 12 1 1.7876 0.8074 2.6387 13 8 1.6620 2.0814 -1.2210 14 6 0.4726 2.7185 -1.2365 15 8 -0.2237 2.7309 -0.2390 16 6 0.0345 3.3734 -2.4151 17 6 -1.0819 4.1339 -2.3900 18 6 -1.7114 4.4729 -1.1060 19 6 -0.9229 4.8804 -0.0236 20 6 -1.5149 5.1920 1.1803 21 6 -2.8940 5.1087 1.3222 22 8 -3.4719 5.4168 2.5120 23 6 -2.6011 5.8176 3.5718 24 6 -3.6869 4.7097 0.2468 25 8 -5.0368 4.6301 0.3903 26 6 -5.7875 4.2151 -0.7526 27 6 -3.1018 4.3954 -0.9638 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8932 -0.5139 0.8900 33 1 5.8769 0.4826 2.1134 34 1 0.5931 3.2644 -3.3329 35 1 -1.5118 4.4926 -3.3135 36 1 0.1497 4.9465 -0.1312 37 1 -0.9052 5.5017 2.0162 38 1 -3.1896 6.0339 4.4635 39 1 -1.8974 5.0137 3.7875 40 1 -2.0521 6.7106 3.2729 41 1 -6.8482 4.1937 -0.5026 42 1 -5.6207 4.9156 -1.5709 43 1 -5.4660 3.2187 -1.0561 44 1 -3.7150 4.0867 -1.7975 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588558154.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:57 Heat of formation + Delta-G solvation = -95.472316 kcal Electronic energy + Delta-G solvation = -27674.801273 eV Core-core repulsion = 23752.878328 eV Total energy + Delta-G solvation = -3921.922945 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.66809 -39.94827 -38.44857 -37.46901 -35.87187 -33.59088 -33.26385 -31.88442 -30.33524 -29.74071 -27.91903 -27.31140 -27.03657 -24.52281 -22.78222 -22.12280 -21.87236 -20.36429 -19.27898 -18.44602 -17.60667 -16.88217 -16.70610 -16.55419 -16.08760 -15.87173 -15.33441 -15.27672 -14.76578 -14.61406 -14.50660 -14.00027 -13.60217 -13.32021 -13.13911 -12.81342 -12.62519 -12.47227 -12.18427 -12.04388 -11.95253 -11.73000 -11.49352 -11.35957 -11.23184 -11.16722 -11.08337 -11.03467 -10.74153 -10.03863 -9.81422 -9.57670 -9.51362 -9.40179 -9.03364 -8.66540 -8.54545 -7.40924 -6.22857 -4.24742 0.67783 1.46399 1.89163 3.18415 3.24904 3.27463 3.30303 3.33645 3.52287 3.77396 3.84845 4.26561 4.64629 4.79510 4.96376 4.98015 5.04454 5.07036 5.13147 5.15414 5.25300 5.33456 5.36053 5.47164 5.49500 5.56167 5.68740 5.83899 5.91127 5.92683 6.00305 6.18421 6.30850 6.38005 6.48234 6.59269 6.63595 6.69723 6.73165 6.77237 7.04266 7.10264 7.40768 7.56839 7.59605 8.25308 8.66200 8.85856 9.35260 10.89249 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.014788 B = 0.004007 C = 0.003599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.954847 B = 6986.100825 C = 7777.407599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.148 4.148 3 C 0.195 3.805 4 H 0.044 0.956 5 C -0.524 4.524 6 H 0.086 0.914 7 C 0.080 3.920 8 N -0.889 5.889 9 Si 0.877 3.123 10 H -0.273 1.273 11 H -0.291 1.291 12 H -0.261 1.261 13 O -0.333 6.333 14 C 0.476 3.524 15 O -0.502 6.502 16 C -0.186 4.186 17 C -0.016 4.016 18 C -0.074 4.074 19 C -0.026 4.026 20 C -0.181 4.181 21 C 0.111 3.889 22 O -0.309 6.309 23 C 0.026 3.974 24 C 0.079 3.921 25 O -0.310 6.310 26 C 0.028 3.972 27 C -0.148 4.148 28 H 0.046 0.954 29 H 0.039 0.961 30 H 0.055 0.945 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.269 0.731 34 H 0.142 0.858 35 H 0.140 0.860 36 H 0.122 0.878 37 H 0.134 0.866 38 H 0.097 0.903 39 H 0.057 0.943 40 H 0.054 0.946 41 H 0.096 0.904 42 H 0.052 0.948 43 H 0.053 0.947 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.036 9.064 -4.486 21.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.186 4.186 3 C 0.140 3.860 4 H 0.062 0.938 5 C -0.561 4.561 6 H 0.104 0.896 7 C -0.123 4.123 8 N -0.526 5.526 9 Si 0.706 3.294 10 H -0.200 1.200 11 H -0.218 1.218 12 H -0.185 1.185 13 O -0.248 6.248 14 C 0.323 3.677 15 O -0.394 6.394 16 C -0.205 4.205 17 C -0.035 4.035 18 C -0.074 4.074 19 C -0.044 4.044 20 C -0.200 4.200 21 C 0.066 3.934 22 O -0.223 6.223 23 C -0.069 4.069 24 C 0.034 3.966 25 O -0.225 6.225 26 C -0.067 4.067 27 C -0.167 4.167 28 H 0.065 0.935 29 H 0.058 0.942 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.160 0.840 35 H 0.158 0.842 36 H 0.140 0.860 37 H 0.152 0.848 38 H 0.116 0.884 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.115 0.885 42 H 0.070 0.930 43 H 0.071 0.929 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -19.341 9.020 -3.825 21.681 hybrid contribution -0.021 -0.816 0.642 1.039 sum -19.362 8.204 -3.183 21.268 Atomic orbital electron populations 1.21878 0.96952 0.99794 1.01804 1.22380 0.94333 0.99869 1.01988 1.20516 0.96189 0.88134 0.81168 0.93811 1.20828 0.87842 1.39735 1.07734 0.89606 1.24740 0.94902 0.95273 0.97396 1.69843 1.08502 1.44484 1.29801 0.86992 0.80998 0.80174 0.81220 1.20014 1.21803 1.18524 1.86227 1.34231 1.62462 1.41881 1.20089 0.80934 0.78121 0.88580 1.90916 1.54571 1.58222 1.35725 1.21599 0.98697 1.01545 0.98683 1.22373 0.92211 0.92461 0.96444 1.18538 0.92217 1.02552 0.94106 1.20852 0.99085 0.93460 0.91025 1.20889 0.92116 1.07396 0.99584 1.18360 0.90513 0.99678 0.84873 1.86084 1.35709 1.82042 1.18418 1.23068 0.95272 0.99681 0.88913 1.17896 0.82675 1.03542 0.92460 1.86142 1.15015 1.83965 1.37343 1.23002 0.96084 0.99334 0.88319 1.20975 0.94592 1.04899 0.96207 0.93531 0.94219 0.92588 0.91421 0.92067 0.92123 0.83978 0.84249 0.85999 0.84838 0.88423 0.92451 0.92703 0.88547 0.92954 0.92877 0.84956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.95 8.55 37.15 0.32 -2.64 16 2 C -0.15 -3.39 5.14 -26.73 -0.14 -3.52 16 3 C 0.19 4.83 1.81 -27.88 -0.05 4.78 16 4 H 0.04 1.15 6.17 -51.93 -0.32 0.83 16 5 C -0.52 -14.93 9.47 -34.44 -0.33 -15.26 16 6 H 0.09 2.64 8.06 -52.49 -0.42 2.22 16 7 C 0.08 2.29 5.45 -17.82 -0.10 2.19 16 8 N -0.89 -26.73 13.96 55.43 0.77 -25.96 16 9 Si 0.88 21.74 24.41 -169.99 -4.15 17.59 16 10 H -0.27 -6.55 6.83 56.52 0.39 -6.17 16 11 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 12 H -0.26 -6.36 6.53 56.52 0.37 -5.99 16 13 O -0.33 -7.46 9.68 -41.13 -0.40 -7.85 16 14 C 0.48 9.01 5.17 32.08 0.17 9.18 16 15 O -0.50 -10.18 9.12 -19.38 -0.18 -10.35 16 16 C -0.19 -2.61 9.86 -39.35 -0.39 -3.00 16 17 C -0.02 -0.19 9.80 -37.17 -0.36 -0.56 16 18 C -0.07 -1.03 4.49 -105.06 -0.47 -1.50 16 19 C -0.03 -0.40 6.61 -39.11 -0.26 -0.66 16 20 C -0.18 -2.70 9.01 -39.53 -0.36 -3.06 16 21 C 0.11 1.70 6.71 -38.89 -0.26 1.44 16 22 O -0.31 -4.50 10.26 -33.84 -0.35 -4.84 16 23 C 0.03 0.27 9.81 101.05 0.99 1.26 16 24 C 0.08 1.16 6.69 -39.19 -0.26 0.90 16 25 O -0.31 -4.25 10.27 -34.39 -0.35 -4.61 16 26 C 0.03 0.25 9.81 101.05 0.99 1.24 16 27 C -0.15 -1.93 8.78 -38.99 -0.34 -2.27 16 28 H 0.05 0.91 6.05 -51.92 -0.31 0.59 16 29 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.06 1.18 7.75 -51.93 -0.40 0.77 16 31 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 32 H 0.06 1.45 3.21 -51.92 -0.17 1.29 16 33 H 0.27 7.52 8.31 -40.82 -0.34 7.19 16 34 H 0.14 1.64 8.06 -52.49 -0.42 1.22 16 35 H 0.14 1.07 8.06 -52.49 -0.42 0.64 16 36 H 0.12 1.96 7.03 -52.49 -0.37 1.60 16 37 H 0.13 1.76 6.27 -52.49 -0.33 1.43 16 38 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.06 0.61 7.65 -51.93 -0.40 0.21 16 40 H 0.05 0.49 7.65 -51.93 -0.40 0.10 16 41 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.05 0.38 7.66 -51.93 -0.40 -0.02 16 43 H 0.05 0.44 7.66 -51.92 -0.40 0.04 16 44 H 0.13 1.33 6.28 -52.48 -0.33 1.00 16 LS Contribution 353.75 15.07 5.33 5.33 Total: -1.00 -33.88 353.75 -6.13 -40.02 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -5.96 Total: 2.14 kcal Atomic # 6 Polarization: -10.62 SS G_CDS: -0.85 Total: -11.47 kcal Atomic # 7 Polarization: -26.73 SS G_CDS: 0.77 Total: -25.96 kcal Atomic # 8 Polarization: -26.38 SS G_CDS: -1.28 Total: -27.66 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.15 Total: 17.59 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.88 -6.13 -40.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588558154.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.454 kcal (2) G-P(sol) polarization free energy of solvation -33.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds