Wall clock time and date at job start Tue Mar 31 2020 13:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53003 * 109.47267 * 2 1 4 4 H 1.08999 * 109.47029 * 54.99812 * 3 2 1 5 5 C 1.50701 * 109.46979 * 174.99862 * 3 2 1 6 6 H 1.08000 * 119.99584 * 120.00385 * 5 3 2 7 7 C 1.37882 * 119.99911 * 299.99695 * 5 3 2 8 8 N 1.31518 * 119.99699 * 180.02562 * 7 5 3 9 9 Si 1.86800 * 120.00068 * 0.02562 * 7 5 3 10 10 H 1.48493 * 109.46820 * 89.99905 * 9 7 5 11 11 H 1.48501 * 109.46713 * 210.00004 * 9 7 5 12 12 H 1.48495 * 109.46916 * 329.99720 * 9 7 5 13 13 O 1.42893 * 109.47083 * 294.99942 * 3 2 1 14 14 C 1.34933 * 117.00442 * 89.99770 * 13 3 2 15 15 O 1.21653 * 119.99679 * 0.02562 * 14 13 3 16 16 C 1.41776 * 120.00246 * 180.02562 * 14 13 3 17 17 C 1.35103 * 119.99568 * 187.30469 * 16 14 13 18 18 C 1.46957 * 120.00298 * 10.54025 * 17 16 14 19 19 C 1.39978 * 120.09645 * 44.10649 * 18 17 16 20 20 C 1.37734 * 119.97610 * 180.27783 * 19 18 17 21 21 C 1.38881 * 120.17172 * 359.72206 * 20 19 18 22 22 O 1.35816 * 119.90087 * 179.97438 * 21 20 19 23 23 C 1.42906 * 116.99770 * 359.97438 * 22 21 20 24 24 C 1.39447 * 120.19467 * 359.97438 * 21 20 19 25 25 O 1.35991 * 119.98609 * 180.02562 * 24 21 20 26 26 C 1.42901 * 117.00101 * 179.97438 * 25 24 21 27 27 C 1.38074 * 120.02288 * 0.02562 * 24 21 20 28 28 H 1.09008 * 109.47377 * 60.00277 * 1 2 3 29 29 H 1.09004 * 109.47575 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47718 * 300.00409 * 1 2 3 31 31 H 1.09005 * 109.47486 * 240.00047 * 2 1 3 32 32 H 1.09007 * 109.47049 * 120.00159 * 2 1 3 33 33 H 0.96998 * 119.99859 * 179.97438 * 8 7 5 34 34 H 1.07997 * 119.99902 * 7.30151 * 16 14 13 35 35 H 1.07996 * 119.99782 * 190.54276 * 17 16 14 36 36 H 1.07999 * 120.01428 * 0.02911 * 19 18 17 37 37 H 1.07999 * 119.91697 * 179.70290 * 20 19 18 38 38 H 1.09005 * 109.46766 * 180.02562 * 23 22 21 39 39 H 1.08996 * 109.47193 * 300.00013 * 23 22 21 40 40 H 1.09000 * 109.47101 * 60.00010 * 23 22 21 41 41 H 1.08997 * 109.47656 * 179.97438 * 26 25 24 42 42 H 1.08998 * 109.47459 * 300.00506 * 26 25 24 43 43 H 1.09008 * 109.46644 * 60.00483 * 26 25 24 44 44 H 1.08005 * 120.08664 * 180.02562 * 27 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4442 0.1239 6 1 4.1471 1.8888 -0.6523 7 6 4.1432 0.8783 1.2281 8 7 5.4539 0.8803 1.3364 9 14 3.0962 0.1089 2.5702 10 1 2.8754 -1.3271 2.2635 11 1 3.7935 0.2349 3.8752 12 1 1.7876 0.8074 2.6387 13 8 1.6620 2.0814 -1.2210 14 6 0.4726 2.7185 -1.2365 15 8 -0.2237 2.7309 -0.2390 16 6 0.0345 3.3734 -2.4151 17 6 -1.0819 4.1339 -2.3900 18 6 -1.7114 4.4729 -1.1060 19 6 -0.9229 4.8804 -0.0236 20 6 -1.5149 5.1920 1.1803 21 6 -2.8940 5.1087 1.3222 22 8 -3.4719 5.4168 2.5120 23 6 -2.6011 5.8176 3.5718 24 6 -3.6869 4.7097 0.2468 25 8 -5.0368 4.6301 0.3903 26 6 -5.7875 4.2151 -0.7526 27 6 -3.1018 4.3954 -0.9638 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8932 -0.5139 0.8900 33 1 5.8769 0.4826 2.1134 34 1 0.5931 3.2644 -3.3329 35 1 -1.5118 4.4926 -3.3135 36 1 0.1497 4.9465 -0.1312 37 1 -0.9052 5.5017 2.0162 38 1 -3.1896 6.0339 4.4635 39 1 -1.8974 5.0137 3.7875 40 1 -2.0521 6.7106 3.2729 41 1 -6.8482 4.1937 -0.5026 42 1 -5.6207 4.9156 -1.5709 43 1 -5.4660 3.2187 -1.0561 44 1 -3.7150 4.0867 -1.7975 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588558154.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:56 Heat of formation + Delta-G solvation = -116.780625 kcal Electronic energy + Delta-G solvation = -27675.725271 eV Core-core repulsion = 23752.878328 eV Total energy + Delta-G solvation = -3922.846943 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.89260 -41.26583 -39.41946 -38.76517 -37.28502 -35.45770 -34.47814 -33.84573 -31.38097 -30.78982 -29.76763 -28.12611 -28.00708 -25.88077 -24.57803 -23.33583 -22.97999 -22.02197 -20.62526 -19.62706 -18.99033 -18.63844 -18.00047 -17.83836 -17.37891 -17.01884 -16.79752 -16.37482 -16.14361 -15.75800 -15.42013 -15.34594 -14.99952 -14.95730 -14.42593 -14.17229 -14.03109 -13.81312 -13.61437 -13.46360 -13.17125 -13.10845 -13.04632 -12.90862 -12.57518 -12.30549 -12.13330 -12.07885 -12.04647 -11.99331 -11.49939 -11.47044 -11.15329 -10.98242 -10.68129 -10.54032 -9.63154 -8.50987 -8.45474 -6.53025 -0.42383 0.37503 0.78618 1.20585 1.27765 1.37817 2.17663 2.18650 2.29505 2.32819 2.38018 2.76703 2.87197 3.65323 3.79457 3.99624 4.02770 4.12510 4.19066 4.21404 4.27405 4.32489 4.33044 4.38677 4.45239 4.46167 4.58236 4.61027 4.66329 4.67049 4.76576 4.89024 4.91923 4.94928 5.04210 5.09589 5.24252 5.28957 5.35005 5.39525 5.58614 5.65041 5.77909 6.09825 6.21725 6.51122 6.61374 7.02756 7.17024 8.70538 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.014788 B = 0.004007 C = 0.003599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.954847 B = 6986.100825 C = 7777.407599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.147 4.147 3 C 0.203 3.797 4 H 0.027 0.973 5 C -0.538 4.538 6 H 0.045 0.955 7 C 0.032 3.968 8 N -0.931 5.931 9 Si 0.938 3.062 10 H -0.254 1.254 11 H -0.284 1.284 12 H -0.258 1.258 13 O -0.352 6.352 14 C 0.470 3.530 15 O -0.521 6.521 16 C -0.214 4.214 17 C 0.025 3.975 18 C -0.088 4.088 19 C -0.047 4.047 20 C -0.192 4.192 21 C 0.093 3.907 22 O -0.326 6.326 23 C 0.019 3.981 24 C 0.069 3.931 25 O -0.332 6.332 26 C 0.017 3.983 27 C -0.139 4.139 28 H 0.050 0.950 29 H 0.069 0.931 30 H 0.043 0.957 31 H 0.070 0.930 32 H 0.054 0.946 33 H 0.274 0.726 34 H 0.168 0.832 35 H 0.195 0.805 36 H 0.104 0.896 37 H 0.138 0.862 38 H 0.123 0.877 39 H 0.050 0.950 40 H 0.066 0.934 41 H 0.116 0.884 42 H 0.072 0.928 43 H 0.060 0.940 44 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.172 8.756 -5.533 24.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.184 4.184 3 C 0.148 3.852 4 H 0.044 0.956 5 C -0.575 4.575 6 H 0.063 0.937 7 C -0.168 4.168 8 N -0.570 5.570 9 Si 0.763 3.237 10 H -0.179 1.179 11 H -0.211 1.211 12 H -0.182 1.182 13 O -0.269 6.269 14 C 0.319 3.681 15 O -0.413 6.413 16 C -0.233 4.233 17 C 0.007 3.993 18 C -0.088 4.088 19 C -0.065 4.065 20 C -0.210 4.210 21 C 0.047 3.953 22 O -0.240 6.240 23 C -0.075 4.075 24 C 0.024 3.976 25 O -0.247 6.247 26 C -0.077 4.077 27 C -0.157 4.157 28 H 0.069 0.931 29 H 0.088 0.912 30 H 0.062 0.938 31 H 0.089 0.911 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.185 0.815 35 H 0.212 0.788 36 H 0.122 0.878 37 H 0.156 0.844 38 H 0.141 0.859 39 H 0.069 0.931 40 H 0.084 0.916 41 H 0.135 0.865 42 H 0.090 0.910 43 H 0.078 0.922 44 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -22.495 8.719 -4.890 24.616 hybrid contribution 0.864 -0.566 0.938 1.395 sum -21.631 8.153 -3.952 23.451 Atomic orbital electron populations 1.21756 0.94523 1.01580 1.01367 1.22283 0.96434 0.97962 1.01727 1.20107 0.93597 0.89622 0.81882 0.95564 1.21048 0.90005 1.39509 1.06973 0.93678 1.25529 0.95988 0.95617 0.99625 1.69964 1.10313 1.45706 1.30975 0.86010 0.79255 0.80179 0.78226 1.17916 1.21077 1.18223 1.86208 1.36690 1.63473 1.40486 1.20962 0.79491 0.77548 0.90051 1.90915 1.54717 1.58863 1.36842 1.21666 1.00468 1.03679 0.97481 1.22886 0.89939 0.89182 0.97302 1.18861 0.92842 1.02438 0.94708 1.20860 0.98489 0.95049 0.92124 1.20997 0.92494 1.07749 0.99794 1.18626 0.90741 1.00265 0.85646 1.86053 1.36956 1.82199 1.18838 1.23306 0.95521 0.99828 0.88843 1.18177 0.83414 1.03242 0.92804 1.86121 1.14593 1.84090 1.39853 1.23350 0.96595 1.00094 0.87691 1.21291 0.94294 1.03466 0.96667 0.93144 0.91229 0.93829 0.91144 0.92790 0.91632 0.81498 0.78786 0.87766 0.84402 0.85897 0.93090 0.91587 0.86546 0.90983 0.92182 0.81459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.18 8.55 71.98 0.62 -4.56 16 2 C -0.15 -6.59 5.14 30.59 0.16 -6.44 16 3 C 0.20 10.31 1.81 29.85 0.05 10.36 16 4 H 0.03 1.42 6.17 -2.39 -0.01 1.41 16 5 C -0.54 -31.94 9.47 25.60 0.24 -31.69 16 6 H 0.04 2.96 8.06 -2.91 -0.02 2.93 16 7 C 0.03 1.88 5.45 84.66 0.46 2.34 16 8 N -0.93 -57.60 13.96 21.45 0.30 -57.30 16 9 Si 0.94 45.20 24.41 68.60 1.67 46.87 16 10 H -0.25 -11.39 6.83 99.48 0.68 -10.71 16 11 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 12 H -0.26 -12.22 6.53 99.48 0.65 -11.57 16 13 O -0.35 -16.11 9.68 -58.49 -0.57 -16.67 16 14 C 0.47 17.69 5.17 68.69 0.36 18.04 16 15 O -0.52 -21.07 9.12 19.33 0.18 -20.89 16 16 C -0.21 -5.54 9.86 22.42 0.22 -5.32 16 17 C 0.02 0.49 9.80 23.83 0.23 0.72 16 18 C -0.09 -2.27 4.49 -20.15 -0.09 -2.36 16 19 C -0.05 -1.45 6.61 22.57 0.15 -1.30 16 20 C -0.19 -5.82 9.01 22.30 0.20 -5.62 16 21 C 0.09 2.82 6.71 22.72 0.15 2.97 16 22 O -0.33 -9.44 10.26 -77.45 -0.79 -10.24 16 23 C 0.02 0.40 9.81 113.37 1.11 1.51 16 24 C 0.07 1.91 6.69 22.52 0.15 2.06 16 25 O -0.33 -8.46 10.27 -79.41 -0.82 -9.28 16 26 C 0.02 0.24 9.81 113.37 1.11 1.35 16 27 C -0.14 -3.21 8.78 22.65 0.20 -3.01 16 28 H 0.05 1.87 6.05 -2.38 -0.01 1.86 16 29 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 30 H 0.04 1.76 7.75 -2.39 -0.02 1.75 16 31 H 0.07 3.09 8.14 -2.38 -0.02 3.07 16 32 H 0.05 2.49 3.21 -2.38 -0.01 2.48 16 33 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 34 H 0.17 3.43 8.06 -2.91 -0.02 3.40 16 35 H 0.20 1.73 8.06 -2.91 -0.02 1.71 16 36 H 0.10 3.51 7.03 -2.91 -0.02 3.49 16 37 H 0.14 3.82 6.27 -2.91 -0.02 3.80 16 38 H 0.12 1.82 8.14 -2.38 -0.02 1.80 16 39 H 0.05 1.09 7.65 -2.39 -0.02 1.08 16 40 H 0.07 1.18 7.65 -2.39 -0.02 1.16 16 41 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.07 0.75 7.66 -2.39 -0.02 0.73 16 43 H 0.06 0.78 7.66 -2.38 -0.02 0.76 16 44 H 0.17 2.55 6.28 -2.91 -0.02 2.53 16 Total: -1.00 -77.30 353.75 6.23 -71.07 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: 0.93 Total: 17.38 kcal Atomic # 6 Polarization: -26.27 SS G_CDS: 5.33 Total: -20.94 kcal Atomic # 7 Polarization: -57.60 SS G_CDS: 0.30 Total: -57.30 kcal Atomic # 8 Polarization: -55.08 SS G_CDS: -2.00 Total: -57.08 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 1.67 Total: 46.87 kcal Total: -77.30 6.23 -71.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588558154.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.708 kcal (2) G-P(sol) polarization free energy of solvation -77.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds