Wall clock time and date at job start Tue Mar 31 2020 13:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47182 * 2 1 4 4 H 1.08997 * 109.46940 * 179.57163 * 3 2 1 5 5 C 1.50705 * 109.47019 * 59.56939 * 3 2 1 6 6 H 1.07996 * 119.99998 * 240.27523 * 5 3 2 7 7 C 1.37879 * 119.99891 * 60.00550 * 5 3 2 8 8 N 1.31517 * 120.00137 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00184 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47159 * 89.99478 * 9 7 5 11 11 H 1.48495 * 109.47259 * 209.99924 * 9 7 5 12 12 H 1.48501 * 109.46668 * 329.99968 * 9 7 5 13 13 N 1.46896 * 109.46860 * 299.57373 * 3 2 1 14 14 C 1.46905 * 110.99930 * 273.77670 * 13 3 2 15 15 C 1.52995 * 109.46979 * 174.39474 * 14 13 3 16 16 C 1.53005 * 109.47239 * 180.02562 * 15 14 13 17 17 H 1.09004 * 109.60182 * 54.66400 * 16 15 14 18 18 S 1.81802 * 109.60384 * 294.16674 * 16 15 14 19 19 C 1.76512 * 101.76586 * 285.42617 * 18 16 15 20 20 C 1.38589 * 119.98691 * 150.22523 * 19 18 16 21 21 C 1.38250 * 119.92660 * 179.04868 * 20 19 18 22 22 C 1.38297 * 119.89700 * 0.02562 * 21 20 19 23 23 C 1.38073 * 120.42392 * 0.24373 * 22 21 20 24 24 C 1.39166 * 120.28725 * 359.95174 * 23 22 21 25 25 N 1.39223 * 119.09369 * 179.49579 * 24 23 22 26 26 C 1.32960 * 126.22139 * 196.96268 * 25 24 23 27 27 O 1.21303 * 118.47876 * 185.77006 * 26 25 24 28 28 H 1.09004 * 109.47650 * 180.92257 * 1 2 3 29 29 H 1.09003 * 109.47358 * 300.92459 * 1 2 3 30 30 H 1.09000 * 109.47349 * 60.92050 * 1 2 3 31 31 H 1.08999 * 109.47288 * 239.99285 * 2 1 3 32 32 H 1.09001 * 109.47217 * 119.99757 * 2 1 3 33 33 H 0.96995 * 120.00262 * 179.97438 * 8 7 5 34 34 H 1.00904 * 110.99833 * 149.82848 * 13 3 2 35 35 H 1.08999 * 109.47295 * 294.39966 * 14 13 3 36 36 H 1.09006 * 109.46497 * 54.39783 * 14 13 3 37 37 H 1.09007 * 109.47385 * 299.99720 * 15 14 13 38 38 H 1.09000 * 109.47488 * 60.00363 * 15 14 13 39 39 H 1.08001 * 120.04211 * 359.07125 * 20 19 18 40 40 H 1.08010 * 120.05669 * 180.02562 * 21 20 19 41 41 H 1.08001 * 119.79204 * 180.24115 * 22 21 20 42 42 H 1.07995 * 119.85295 * 179.97438 * 23 22 21 43 43 H 0.97002 * 116.88960 * 16.99137 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1299 1.4424 0.0077 5 6 1.5289 2.1560 1.2251 6 1 0.9051 3.0312 1.1194 7 6 1.8532 1.6881 2.4809 8 7 2.6081 0.6188 2.6096 9 14 1.2204 2.5728 3.9995 10 1 -0.0907 1.9994 4.3961 11 1 2.1908 2.4045 5.1108 12 1 1.0580 4.0179 3.6987 13 7 1.5587 2.1319 -1.2045 14 6 2.4660 1.9069 -2.3378 15 6 1.8632 2.5203 -3.6032 16 6 2.8079 2.2854 -4.7837 17 1 3.0238 1.2207 -4.8731 18 16 4.3536 3.2056 -4.5205 19 6 3.8464 4.8635 -4.8516 20 6 4.4739 5.9207 -4.2119 21 6 4.0890 7.2198 -4.4868 22 6 3.0781 7.4607 -5.3993 23 6 2.4456 6.4111 -6.0354 24 6 2.8202 5.0983 -5.7652 25 7 2.1585 4.0585 -6.4128 26 6 2.1634 2.7788 -6.0522 27 8 1.6242 1.9710 -6.7790 28 1 -0.3634 -1.0275 0.0165 29 1 -0.3634 0.5281 0.8816 30 1 -0.3634 0.4995 -0.8981 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 2.8366 0.2899 3.4930 34 1 1.4343 3.1182 -1.0313 35 1 3.4289 2.3739 -2.1307 36 1 2.6056 0.8358 -2.4842 37 1 0.9004 2.0532 -3.8104 38 1 1.7235 3.5914 -3.4568 39 1 5.2631 5.7301 -3.4997 40 1 4.5770 8.0453 -3.9898 41 1 2.7814 8.4763 -5.6157 42 1 1.6570 6.6098 -6.7460 43 1 1.6453 4.2898 -7.2028 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595530264.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:18 Heat of formation + Delta-G solvation = -12.575300 kcal Electronic energy + Delta-G solvation = -24410.933200 eV Core-core repulsion = 20967.650561 eV Total energy + Delta-G solvation = -3443.282639 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.99932 -39.10031 -36.66822 -35.55057 -34.25188 -31.94636 -31.38725 -30.36293 -29.85265 -27.22169 -25.26959 -23.64722 -23.19510 -23.04988 -21.52287 -20.56442 -19.02255 -18.39715 -17.90654 -17.43598 -16.43748 -15.81988 -15.48948 -15.22027 -14.85920 -14.83896 -14.58147 -14.20256 -13.88292 -13.69304 -13.41652 -13.24598 -12.74376 -12.56554 -12.11521 -11.95962 -11.85078 -11.65540 -11.35667 -11.17521 -11.06679 -10.94369 -10.79578 -10.58553 -10.36377 -10.28634 -9.98757 -9.80688 -9.60831 -9.35175 -8.76777 -8.64085 -8.46106 -7.68626 -7.18870 -6.01157 -4.06589 0.61148 0.89490 1.23171 1.90863 2.32022 2.59056 3.29626 3.36192 3.36526 3.38828 3.84997 4.33944 4.39350 4.54864 4.64216 4.86735 4.89785 5.01300 5.17018 5.30072 5.40590 5.46396 5.51402 5.58640 5.79628 5.91033 5.94088 6.12746 6.19299 6.33644 6.41211 6.45974 6.56321 6.70977 6.81383 6.87499 7.25383 7.32754 7.50908 7.51637 7.74954 7.80081 7.85852 8.27134 8.39022 8.67179 9.02443 9.58102 11.04790 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.014760 B = 0.003453 C = 0.003054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.609339 B = 8107.403473 C = 9164.748355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.103 4.103 3 C 0.217 3.783 4 H 0.002 0.998 5 C -0.512 4.512 6 H 0.058 0.942 7 C 0.064 3.936 8 N -0.888 5.888 9 Si 0.892 3.108 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.275 1.275 13 N -0.685 5.685 14 C 0.062 3.938 15 C -0.101 4.101 16 C -0.092 4.092 17 H 0.151 0.849 18 S -0.078 6.078 19 C -0.128 4.128 20 C -0.056 4.056 21 C -0.129 4.129 22 C -0.085 4.085 23 C -0.144 4.144 24 C 0.162 3.838 25 N -0.654 5.654 26 C 0.532 3.468 27 O -0.514 6.514 28 H 0.012 0.988 29 H 0.054 0.946 30 H 0.042 0.958 31 H 0.009 0.991 32 H 0.086 0.914 33 H 0.260 0.740 34 H 0.329 0.671 35 H 0.036 0.964 36 H 0.065 0.935 37 H 0.086 0.914 38 H 0.066 0.934 39 H 0.138 0.862 40 H 0.133 0.867 41 H 0.131 0.869 42 H 0.131 0.869 43 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.047 12.068 -17.348 21.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.141 4.141 3 C 0.110 3.890 4 H 0.019 0.981 5 C -0.551 4.551 6 H 0.076 0.924 7 C -0.138 4.138 8 N -0.527 5.527 9 Si 0.720 3.280 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.200 1.200 13 N -0.316 5.316 14 C -0.068 4.068 15 C -0.141 4.141 16 C -0.224 4.224 17 H 0.169 0.831 18 S 0.165 5.835 19 C -0.243 4.243 20 C -0.079 4.079 21 C -0.149 4.149 22 C -0.105 4.105 23 C -0.166 4.166 24 C 0.060 3.940 25 N -0.297 5.297 26 C 0.318 3.682 27 O -0.389 6.389 28 H 0.032 0.968 29 H 0.073 0.927 30 H 0.062 0.938 31 H 0.028 0.972 32 H 0.104 0.896 33 H 0.070 0.930 34 H 0.146 0.854 35 H 0.054 0.946 36 H 0.084 0.916 37 H 0.104 0.896 38 H 0.085 0.915 39 H 0.156 0.844 40 H 0.150 0.850 41 H 0.149 0.851 42 H 0.149 0.851 43 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 3.610 10.262 -17.248 20.392 hybrid contribution -0.977 1.572 0.441 1.902 sum 2.633 11.834 -16.807 20.723 Atomic orbital electron populations 1.21443 0.97569 0.97237 1.01418 1.21436 0.95005 0.98297 0.99385 1.19111 0.93141 0.91437 0.85361 0.98054 1.21179 1.31460 1.12087 0.90349 0.92375 1.24876 0.95057 0.94996 0.98861 1.69884 1.36846 1.22811 1.23170 0.86590 0.78639 0.80018 0.82706 1.20672 1.21322 1.20002 1.60653 1.48347 1.15967 1.06615 1.21892 0.94692 1.00014 0.90251 1.21726 0.97982 1.02098 0.92292 1.23880 0.97450 1.05033 0.96006 0.83110 1.85960 1.13663 0.96282 1.87618 1.21375 1.01573 0.98510 1.02886 1.20854 0.98828 0.91029 0.97231 1.21158 0.98334 0.96409 0.99025 1.21002 0.95320 0.98746 0.95474 1.20851 1.02212 0.90118 1.03419 1.17521 0.93908 0.87956 0.94584 1.43003 1.49782 1.06385 1.30523 1.19918 0.79330 0.81490 0.87508 1.90823 1.44029 1.51934 1.52076 0.96841 0.92692 0.93844 0.97219 0.89558 0.92968 0.85374 0.94550 0.91624 0.89569 0.91520 0.84449 0.84955 0.85108 0.85121 0.75157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.70 9.51 37.16 0.35 -2.34 16 2 C -0.10 -2.49 5.58 -26.73 -0.15 -2.64 16 3 C 0.22 5.31 2.30 -68.87 -0.16 5.15 16 4 H 0.00 0.05 7.84 -51.93 -0.41 -0.36 16 5 C -0.51 -13.55 7.29 -34.44 -0.25 -13.80 16 6 H 0.06 1.53 7.60 -52.49 -0.40 1.13 16 7 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 8 N -0.89 -24.94 11.32 55.43 0.63 -24.31 16 9 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 13 N -0.69 -14.01 5.55 -107.95 -0.60 -14.61 16 14 C 0.06 1.06 5.29 -3.82 -0.02 1.04 16 15 C -0.10 -1.45 4.95 -26.73 -0.13 -1.58 16 16 C -0.09 -1.19 2.80 -27.93 -0.08 -1.27 16 17 H 0.15 1.90 8.13 -51.93 -0.42 1.48 16 18 S -0.08 -0.98 20.52 -107.50 -2.21 -3.18 16 19 C -0.13 -1.46 5.72 -39.02 -0.22 -1.68 16 20 C -0.06 -0.56 9.78 -39.45 -0.39 -0.94 16 21 C -0.13 -1.02 10.06 -39.56 -0.40 -1.42 16 22 C -0.08 -0.61 10.02 -39.62 -0.40 -1.01 16 23 C -0.14 -1.15 9.79 -39.30 -0.38 -1.54 16 24 C 0.16 1.67 6.58 -83.73 -0.55 1.12 16 25 N -0.65 -6.94 5.08 -10.27 -0.05 -7.00 16 26 C 0.53 7.00 6.85 -11.84 -0.08 6.92 16 27 O -0.51 -8.14 17.78 5.54 0.10 -8.04 16 28 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.05 1.33 7.17 -51.93 -0.37 0.96 16 30 H 0.04 0.94 7.64 -51.93 -0.40 0.54 16 31 H 0.01 0.21 7.46 -51.93 -0.39 -0.18 16 32 H 0.09 2.32 6.08 -51.93 -0.32 2.01 16 33 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 34 H 0.33 6.65 8.25 -39.29 -0.32 6.33 16 35 H 0.04 0.64 7.19 -51.93 -0.37 0.27 16 36 H 0.07 1.17 7.40 -51.93 -0.38 0.79 16 37 H 0.09 1.30 8.14 -51.93 -0.42 0.87 16 38 H 0.07 0.96 7.90 -51.93 -0.41 0.55 16 39 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 40 H 0.13 0.75 8.06 -52.48 -0.42 0.33 16 41 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 42 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 43 H 0.41 3.47 8.54 -40.82 -0.35 3.12 16 LS Contribution 360.95 15.07 5.44 5.44 Total: -1.00 -30.07 360.95 -10.88 -40.95 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -6.21 Total: 7.17 kcal Atomic # 6 Polarization: -9.40 SS G_CDS: -2.95 Total: -12.35 kcal Atomic # 7 Polarization: -45.89 SS G_CDS: -0.02 Total: -45.91 kcal Atomic # 8 Polarization: -8.14 SS G_CDS: 0.10 Total: -8.04 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Atomic # 16 Polarization: -0.98 SS G_CDS: -2.21 Total: -3.18 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.07 -10.88 -40.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595530264.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.374 kcal (2) G-P(sol) polarization free energy of solvation -30.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds