Wall clock time and date at job start Tue Mar 31 2020 13:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47182 * 2 1 4 4 H 1.08997 * 109.46940 * 179.57163 * 3 2 1 5 5 C 1.50705 * 109.47019 * 59.56939 * 3 2 1 6 6 H 1.07996 * 119.99998 * 240.27523 * 5 3 2 7 7 C 1.37879 * 119.99891 * 60.00550 * 5 3 2 8 8 N 1.31517 * 120.00137 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00184 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47159 * 89.99478 * 9 7 5 11 11 H 1.48495 * 109.47259 * 209.99924 * 9 7 5 12 12 H 1.48501 * 109.46668 * 329.99968 * 9 7 5 13 13 N 1.46896 * 109.46860 * 299.57373 * 3 2 1 14 14 C 1.46905 * 110.99930 * 273.77670 * 13 3 2 15 15 C 1.52995 * 109.46979 * 174.39474 * 14 13 3 16 16 C 1.53005 * 109.47239 * 180.02562 * 15 14 13 17 17 H 1.09004 * 109.60182 * 54.66400 * 16 15 14 18 18 S 1.81802 * 109.60384 * 294.16674 * 16 15 14 19 19 C 1.76512 * 101.76586 * 285.42617 * 18 16 15 20 20 C 1.38589 * 119.98691 * 150.22523 * 19 18 16 21 21 C 1.38250 * 119.92660 * 179.04868 * 20 19 18 22 22 C 1.38297 * 119.89700 * 0.02562 * 21 20 19 23 23 C 1.38073 * 120.42392 * 0.24373 * 22 21 20 24 24 C 1.39166 * 120.28725 * 359.95174 * 23 22 21 25 25 N 1.39223 * 119.09369 * 179.49579 * 24 23 22 26 26 C 1.32960 * 126.22139 * 196.96268 * 25 24 23 27 27 O 1.21303 * 118.47876 * 185.77006 * 26 25 24 28 28 H 1.09004 * 109.47650 * 180.92257 * 1 2 3 29 29 H 1.09003 * 109.47358 * 300.92459 * 1 2 3 30 30 H 1.09000 * 109.47349 * 60.92050 * 1 2 3 31 31 H 1.08999 * 109.47288 * 239.99285 * 2 1 3 32 32 H 1.09001 * 109.47217 * 119.99757 * 2 1 3 33 33 H 0.96995 * 120.00262 * 179.97438 * 8 7 5 34 34 H 1.00904 * 110.99833 * 149.82848 * 13 3 2 35 35 H 1.08999 * 109.47295 * 294.39966 * 14 13 3 36 36 H 1.09006 * 109.46497 * 54.39783 * 14 13 3 37 37 H 1.09007 * 109.47385 * 299.99720 * 15 14 13 38 38 H 1.09000 * 109.47488 * 60.00363 * 15 14 13 39 39 H 1.08001 * 120.04211 * 359.07125 * 20 19 18 40 40 H 1.08010 * 120.05669 * 180.02562 * 21 20 19 41 41 H 1.08001 * 119.79204 * 180.24115 * 22 21 20 42 42 H 1.07995 * 119.85295 * 179.97438 * 23 22 21 43 43 H 0.97002 * 116.88960 * 16.99137 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1299 1.4424 0.0077 5 6 1.5289 2.1560 1.2251 6 1 0.9051 3.0312 1.1194 7 6 1.8532 1.6881 2.4809 8 7 2.6081 0.6188 2.6096 9 14 1.2204 2.5728 3.9995 10 1 -0.0907 1.9994 4.3961 11 1 2.1908 2.4045 5.1108 12 1 1.0580 4.0179 3.6987 13 7 1.5587 2.1319 -1.2045 14 6 2.4660 1.9069 -2.3378 15 6 1.8632 2.5203 -3.6032 16 6 2.8079 2.2854 -4.7837 17 1 3.0238 1.2207 -4.8731 18 16 4.3536 3.2056 -4.5205 19 6 3.8464 4.8635 -4.8516 20 6 4.4739 5.9207 -4.2119 21 6 4.0890 7.2198 -4.4868 22 6 3.0781 7.4607 -5.3993 23 6 2.4456 6.4111 -6.0354 24 6 2.8202 5.0983 -5.7652 25 7 2.1585 4.0585 -6.4128 26 6 2.1634 2.7788 -6.0522 27 8 1.6242 1.9710 -6.7790 28 1 -0.3634 -1.0275 0.0165 29 1 -0.3634 0.5281 0.8816 30 1 -0.3634 0.4995 -0.8981 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 2.8366 0.2899 3.4930 34 1 1.4343 3.1182 -1.0313 35 1 3.4289 2.3739 -2.1307 36 1 2.6056 0.8358 -2.4842 37 1 0.9004 2.0532 -3.8104 38 1 1.7235 3.5914 -3.4568 39 1 5.2631 5.7301 -3.4997 40 1 4.5770 8.0453 -3.9898 41 1 2.7814 8.4763 -5.6157 42 1 1.6570 6.6098 -6.7460 43 1 1.6453 4.2898 -7.2028 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595530264.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:17 Heat of formation + Delta-G solvation = -30.544200 kcal Electronic energy + Delta-G solvation = -24411.712390 eV Core-core repulsion = 20967.650561 eV Total energy + Delta-G solvation = -3444.061829 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.92156 -39.90917 -38.37441 -36.44792 -35.77150 -33.72964 -32.24496 -31.93638 -30.61417 -28.86809 -26.91709 -25.06107 -24.40760 -23.88462 -22.90315 -21.50316 -20.87607 -19.24798 -18.86311 -18.34478 -18.26919 -17.00173 -16.83616 -16.39146 -16.27050 -15.68936 -15.64177 -15.34168 -15.24783 -15.02777 -14.74350 -14.32478 -14.13082 -13.97805 -13.71497 -13.45023 -13.05114 -12.82342 -12.70106 -12.56731 -12.49588 -12.34770 -12.16753 -12.10077 -11.88159 -11.68398 -11.57607 -11.31031 -11.17145 -10.77670 -10.56561 -10.48568 -9.39553 -9.02433 -8.53293 -8.07337 -6.19490 -0.21937 0.19485 0.36846 1.01724 1.33204 1.43602 1.45166 1.54042 1.72945 2.44352 2.68509 2.88115 3.21279 3.33549 3.63995 3.77643 3.98768 4.05873 4.20430 4.33951 4.34156 4.39288 4.47212 4.60364 4.68220 4.80437 4.85608 4.92431 4.93635 4.97304 5.06744 5.29742 5.32364 5.40180 5.42303 5.50262 5.57707 5.73250 5.73764 5.82958 5.90469 5.98772 6.29704 6.49733 6.59136 6.81026 7.04919 7.49222 8.97856 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.014760 B = 0.003453 C = 0.003054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.609339 B = 8107.403473 C = 9164.748355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.100 4.100 3 C 0.223 3.777 4 H -0.034 1.034 5 C -0.522 4.522 6 H 0.058 0.942 7 C 0.018 3.982 8 N -0.917 5.917 9 Si 0.954 3.046 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.267 1.267 13 N -0.680 5.680 14 C 0.068 3.932 15 C -0.083 4.083 16 C -0.089 4.089 17 H 0.150 0.850 18 S -0.102 6.102 19 C -0.147 4.147 20 C -0.073 4.073 21 C -0.124 4.124 22 C -0.079 4.079 23 C -0.138 4.138 24 C 0.142 3.858 25 N -0.643 5.643 26 C 0.535 3.465 27 O -0.547 6.547 28 H 0.031 0.969 29 H 0.035 0.965 30 H 0.052 0.948 31 H 0.018 0.982 32 H 0.058 0.942 33 H 0.260 0.740 34 H 0.332 0.668 35 H 0.033 0.967 36 H 0.057 0.943 37 H 0.082 0.918 38 H 0.069 0.931 39 H 0.137 0.863 40 H 0.158 0.842 41 H 0.166 0.834 42 H 0.159 0.841 43 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.094 14.730 -18.144 23.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.138 4.138 3 C 0.115 3.885 4 H -0.016 1.016 5 C -0.561 4.561 6 H 0.076 0.924 7 C -0.182 4.182 8 N -0.556 5.556 9 Si 0.780 3.220 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.191 1.191 13 N -0.310 5.310 14 C -0.062 4.062 15 C -0.123 4.123 16 C -0.221 4.221 17 H 0.168 0.832 18 S 0.140 5.860 19 C -0.262 4.262 20 C -0.096 4.096 21 C -0.144 4.144 22 C -0.099 4.099 23 C -0.159 4.159 24 C 0.041 3.959 25 N -0.285 5.285 26 C 0.320 3.680 27 O -0.425 6.425 28 H 0.050 0.950 29 H 0.054 0.946 30 H 0.071 0.929 31 H 0.037 0.963 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.149 0.851 35 H 0.051 0.949 36 H 0.076 0.924 37 H 0.100 0.900 38 H 0.088 0.912 39 H 0.155 0.845 40 H 0.175 0.825 41 H 0.183 0.817 42 H 0.176 0.824 43 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 2.660 12.978 -18.063 22.400 hybrid contribution -0.605 0.885 0.652 1.255 sum 2.055 13.863 -17.411 22.351 Atomic orbital electron populations 1.21302 0.96034 0.98271 1.00825 1.21327 0.96256 0.97864 0.98399 1.18892 0.90946 0.92054 0.86633 1.01619 1.21439 1.31235 1.12126 0.91262 0.92386 1.25614 0.95258 0.95641 1.01649 1.70022 1.37896 1.24063 1.23662 0.85624 0.77945 0.79244 0.79227 1.20391 1.21227 1.19131 1.60567 1.48786 1.15819 1.05835 1.21846 0.94236 0.99780 0.90358 1.21462 0.97748 1.01758 0.91287 1.23739 0.97411 1.05322 0.95593 0.83235 1.85991 1.13625 0.98234 1.88122 1.21467 1.02944 0.97460 1.04339 1.21031 0.99182 0.91749 0.97616 1.21526 0.98140 0.96068 0.98698 1.21460 0.94137 1.00161 0.94102 1.21238 1.02395 0.89006 1.03276 1.17734 0.94239 0.88727 0.95175 1.42841 1.49328 1.05667 1.30707 1.19800 0.78884 0.82112 0.87165 1.90806 1.45699 1.52978 1.53040 0.94981 0.94632 0.92906 0.96310 0.92397 0.93067 0.85118 0.94916 0.92407 0.89989 0.91244 0.84535 0.82476 0.81686 0.82353 0.73871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.78 9.51 71.98 0.68 -4.09 16 2 C -0.10 -4.90 5.58 30.59 0.17 -4.73 16 3 C 0.22 11.14 2.30 44.17 0.10 11.24 16 4 H -0.03 -1.90 7.84 -2.39 -0.02 -1.91 16 5 C -0.52 -27.82 7.29 25.60 0.19 -27.63 16 6 H 0.06 3.03 7.60 -2.91 -0.02 3.01 16 7 C 0.02 0.95 5.30 84.65 0.45 1.40 16 8 N -0.92 -52.40 11.32 21.45 0.24 -52.16 16 9 Si 0.95 42.95 29.54 68.60 2.03 44.97 16 10 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 11 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 12 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 13 N -0.68 -27.91 5.55 -495.45 -2.75 -30.66 16 14 C 0.07 2.37 5.29 86.30 0.46 2.82 16 15 C -0.08 -2.36 4.95 30.59 0.15 -2.21 16 16 C -0.09 -2.33 2.80 29.82 0.08 -2.25 16 17 H 0.15 3.91 8.13 -2.39 -0.02 3.89 16 18 S -0.10 -2.60 20.52 -56.49 -1.16 -3.76 16 19 C -0.15 -3.23 5.72 22.63 0.13 -3.10 16 20 C -0.07 -1.34 9.78 22.36 0.22 -1.12 16 21 C -0.12 -1.58 10.06 22.29 0.22 -1.36 16 22 C -0.08 -0.81 10.02 22.24 0.22 -0.59 16 23 C -0.14 -1.73 9.79 22.45 0.22 -1.52 16 24 C 0.14 2.69 6.58 38.47 0.25 2.94 16 25 N -0.64 -12.89 5.08 -305.79 -1.55 -14.44 16 26 C 0.54 13.95 6.85 87.90 0.60 14.55 16 27 O -0.55 -17.39 17.78 -3.10 -0.06 -17.45 16 28 H 0.03 1.27 8.14 -2.39 -0.02 1.26 16 29 H 0.03 1.70 7.17 -2.39 -0.02 1.68 16 30 H 0.05 2.23 7.64 -2.39 -0.02 2.21 16 31 H 0.02 0.85 7.46 -2.39 -0.02 0.83 16 32 H 0.06 3.19 6.08 -2.39 -0.01 3.17 16 33 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 34 H 0.33 13.35 8.25 -89.69 -0.74 12.61 16 35 H 0.03 1.18 7.19 -2.39 -0.02 1.16 16 36 H 0.06 2.11 7.40 -2.38 -0.02 2.09 16 37 H 0.08 2.43 8.14 -2.38 -0.02 2.41 16 38 H 0.07 1.95 7.90 -2.39 -0.02 1.93 16 39 H 0.14 2.43 8.06 -2.91 -0.02 2.40 16 40 H 0.16 1.19 8.06 -2.91 -0.02 1.17 16 41 H 0.17 0.62 8.06 -2.91 -0.02 0.60 16 42 H 0.16 1.09 8.06 -2.91 -0.02 1.06 16 43 H 0.42 6.46 8.54 -92.71 -0.79 5.67 16 Total: -1.00 -65.45 360.95 0.41 -65.04 By element: Atomic # 1 Polarization: 24.59 SS G_CDS: -0.50 Total: 24.10 kcal Atomic # 6 Polarization: -19.79 SS G_CDS: 4.15 Total: -15.64 kcal Atomic # 7 Polarization: -93.20 SS G_CDS: -4.06 Total: -97.26 kcal Atomic # 8 Polarization: -17.39 SS G_CDS: -0.06 Total: -17.45 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.97 kcal Atomic # 16 Polarization: -2.60 SS G_CDS: -1.16 Total: -3.76 kcal Total: -65.45 0.41 -65.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595530264.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.491 kcal (2) G-P(sol) polarization free energy of solvation -65.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds