Wall clock time and date at job start Tue Mar 31 2020 12:40:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.46705 * 2 1 4 4 C 1.52992 * 109.47537 * 119.99886 * 2 1 3 5 5 C 1.52999 * 109.47451 * 174.99897 * 4 2 1 6 6 N 1.46493 * 109.47589 * 180.02562 * 5 4 2 7 7 C 1.46500 * 120.00299 * 270.00655 * 6 5 4 8 8 C 1.50700 * 109.46981 * 262.08897 * 7 6 5 9 9 H 1.08003 * 120.00041 * 0.02562 * 8 7 6 10 10 C 1.37879 * 120.00253 * 179.97438 * 8 7 6 11 11 N 1.31506 * 120.00183 * 180.02562 * 10 8 7 12 12 Si 1.86802 * 119.99835 * 0.02562 * 10 8 7 13 13 H 1.48505 * 109.46941 * 89.99719 * 12 10 8 14 14 H 1.48492 * 109.47334 * 210.00007 * 12 10 8 15 15 H 1.48497 * 109.47150 * 330.00162 * 12 10 8 16 16 C 1.34775 * 120.00108 * 89.99727 * 6 5 4 17 17 O 1.21726 * 120.00076 * 1.47594 * 16 6 5 18 18 C 1.46498 * 120.00165 * 181.47405 * 16 6 5 19 19 C 1.36115 * 125.71107 * 170.12375 * 18 16 6 20 20 C 1.42222 * 107.62720 * 179.97438 * 19 18 16 21 21 C 1.45588 * 140.77964 * 180.02562 * 20 19 18 22 22 C 1.31818 * 114.63274 * 179.97438 * 21 20 19 23 23 S 1.75351 * 111.24487 * 359.97438 * 22 21 20 24 24 C 1.38180 * 106.99492 * 359.97438 * 20 19 18 25 25 N 1.37464 * 108.16321 * 359.73728 * 24 20 19 26 26 H 0.97006 * 125.67681 * 180.30260 * 25 24 20 27 27 H 1.09001 * 109.46817 * 299.99466 * 1 2 3 28 28 H 1.08995 * 109.47334 * 60.00247 * 1 2 3 29 29 H 1.09000 * 109.46743 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46817 * 240.00534 * 2 1 3 31 31 H 1.08996 * 109.47370 * 60.00320 * 3 2 1 32 32 H 1.09000 * 109.47228 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.47080 * 299.99810 * 3 2 1 34 34 H 1.09005 * 109.46897 * 54.99935 * 4 2 1 35 35 H 1.09003 * 109.47252 * 295.00457 * 4 2 1 36 36 H 1.09003 * 109.46533 * 60.00204 * 5 4 2 37 37 H 1.08998 * 109.46893 * 300.00511 * 5 4 2 38 38 H 1.09005 * 109.47266 * 22.09062 * 7 6 5 39 39 H 1.08996 * 109.47884 * 142.08997 * 7 6 5 40 40 H 0.97003 * 120.00128 * 180.02562 * 11 10 8 41 41 H 1.08001 * 126.18612 * 359.97438 * 19 18 16 42 42 H 1.07997 * 122.68766 * 359.95253 * 21 20 19 43 43 H 1.07996 * 124.37971 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5649 -0.8310 1.1879 6 7 4.0533 -1.5220 2.3836 7 6 4.4017 -0.7549 3.5821 8 6 5.8913 -0.5298 3.6190 9 1 6.5160 -0.9188 2.8285 10 6 6.4567 0.1738 4.6614 11 7 7.7565 0.3707 4.6933 12 14 5.3761 0.8473 6.0283 13 1 5.2527 -0.1663 7.1066 14 1 5.9872 2.0837 6.5786 15 1 4.0294 1.1597 5.4862 16 6 4.1820 -2.8636 2.3813 17 8 3.9181 -3.4987 1.3769 18 6 4.6396 -3.5577 3.5876 19 6 4.6319 -4.9051 3.7801 20 6 5.1570 -5.1579 5.0774 21 6 5.4603 -6.2625 5.9760 22 6 5.9691 -5.9022 7.1374 23 16 6.1296 -4.1595 7.2476 24 6 5.4696 -3.9317 5.6325 25 7 5.1581 -2.9548 4.7169 26 1 5.2799 -2.0009 4.8438 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.6767 1.9564 0.8900 32 1 3.1300 1.4427 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6055 -1.7198 1.2951 35 1 1.7517 -0.1583 2.1369 36 1 3.9995 0.1676 1.1419 37 1 3.8532 -1.3939 0.3001 38 1 3.8893 0.2069 3.5596 39 1 4.0959 -1.3087 4.4698 40 1 8.1543 0.8653 5.4268 41 1 4.2890 -5.6480 3.0751 42 1 5.2824 -7.2946 5.7122 43 1 6.2514 -6.5912 7.9196 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609142957.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:01 Heat of formation + Delta-G solvation = 36.392409 kcal Electronic energy + Delta-G solvation = -25111.231004 eV Core-core repulsion = 21670.071764 eV Total energy + Delta-G solvation = -3441.159240 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.93364 -38.84065 -36.66680 -35.52043 -34.59671 -32.93739 -30.23467 -29.72205 -28.04815 -27.50420 -27.08440 -23.86255 -23.07010 -22.53238 -21.13053 -19.84490 -19.43296 -18.84865 -17.66473 -17.38470 -16.13639 -15.73379 -15.23055 -14.78110 -14.75098 -14.39943 -14.26036 -13.96000 -13.75232 -13.46182 -13.15597 -13.06362 -12.72041 -12.60086 -12.29182 -12.19948 -11.93159 -11.73044 -11.44938 -11.40087 -11.21651 -11.05917 -11.00367 -10.73959 -10.58008 -10.51893 -10.40363 -10.29905 -9.96840 -9.48818 -9.13435 -8.99559 -8.03249 -7.77256 -7.19341 -6.59215 -4.66696 1.56550 1.75653 1.96903 2.39661 2.88167 2.98365 3.01569 3.31161 3.55290 3.89249 3.90562 4.09296 4.68409 4.91182 4.94734 5.02944 5.04430 5.27317 5.43882 5.51873 5.62428 5.71102 5.77341 5.81278 5.87037 5.88430 5.93425 6.00553 6.04230 6.08162 6.13540 6.23049 6.25612 6.30621 6.43712 6.49907 6.53958 6.67922 6.91709 6.97388 7.10664 7.31419 7.81949 7.99930 8.07241 8.51567 8.70645 8.93101 10.51328 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.011973 B = 0.004937 C = 0.003824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2337.994079 B = 5670.176732 C = 7320.437844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.093 4.093 3 C -0.151 4.151 4 C -0.130 4.130 5 C 0.119 3.881 6 N -0.589 5.589 7 C 0.190 3.810 8 C -0.566 4.566 9 H 0.089 0.911 10 C 0.081 3.919 11 N -0.862 5.862 12 Si 0.844 3.156 13 H -0.265 1.265 14 H -0.269 1.269 15 H -0.256 1.256 16 C 0.591 3.409 17 O -0.551 6.551 18 C 0.008 3.992 19 C -0.094 4.094 20 C -0.175 4.175 21 C -0.067 4.067 22 C -0.232 4.232 23 S 0.112 5.888 24 C -0.013 4.013 25 N -0.496 5.496 26 H 0.443 0.557 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.071 0.929 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.050 0.950 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.048 0.952 39 H 0.024 0.976 40 H 0.274 0.726 41 H 0.149 0.851 42 H 0.138 0.862 43 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.799 -3.918 0.718 9.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.112 4.112 3 C -0.208 4.208 4 C -0.169 4.169 5 C -0.004 4.004 6 N -0.318 5.318 7 C 0.068 3.932 8 C -0.605 4.605 9 H 0.107 0.893 10 C -0.127 4.127 11 N -0.496 5.496 12 Si 0.668 3.332 13 H -0.190 1.190 14 H -0.193 1.193 15 H -0.180 1.180 16 C 0.380 3.620 17 O -0.430 6.430 18 C -0.108 4.108 19 C -0.123 4.123 20 C -0.187 4.187 21 C -0.099 4.099 22 C -0.366 4.366 23 S 0.365 5.635 24 C -0.246 4.246 25 N -0.112 5.112 26 H 0.303 0.697 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.090 0.910 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.100 0.900 37 H 0.097 0.903 38 H 0.066 0.934 39 H 0.041 0.959 40 H 0.085 0.915 41 H 0.166 0.834 42 H 0.156 0.844 43 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -8.230 -2.912 1.367 8.837 hybrid contribution -0.641 0.075 -0.072 0.649 sum -8.871 -2.837 1.295 9.403 Atomic orbital electron populations 1.21823 0.95461 1.01568 1.01380 1.21044 0.95478 0.96314 0.98412 1.21920 1.01648 0.95850 1.01392 1.22031 0.96256 1.00816 0.97759 1.21469 0.93067 0.97795 0.88020 1.47764 1.63319 1.05521 1.15216 1.20170 0.97346 0.92614 0.83068 1.21522 0.90224 1.37493 1.11216 0.89274 1.24978 0.95104 0.94739 0.97894 1.69847 1.09848 1.37940 1.31956 0.87306 0.81955 0.80943 0.82995 1.18965 1.19317 1.17952 1.16983 0.77275 0.81819 0.85944 1.90758 1.52986 1.66393 1.32895 1.19969 1.09063 0.92438 0.89296 1.20516 1.03713 0.93172 0.94856 1.19326 1.11491 0.91032 0.96898 1.20258 0.99187 0.98244 0.92165 1.24757 1.11704 0.97609 1.02548 1.83853 1.69175 1.02176 1.08323 1.23622 1.09835 0.92851 0.98258 1.43968 1.46836 1.10479 1.09947 0.69713 0.92876 0.92936 0.92789 0.91043 0.92736 0.92053 0.93045 0.91646 0.91964 0.89975 0.90257 0.93359 0.95852 0.91508 0.83375 0.84399 0.81864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.19 37.16 0.34 -1.18 16 2 C -0.09 -1.12 2.92 -90.62 -0.26 -1.39 16 3 C -0.15 -1.71 8.95 37.16 0.33 -1.38 16 4 C -0.13 -1.90 5.01 -26.74 -0.13 -2.03 16 5 C 0.12 2.06 5.14 -4.05 -0.02 2.04 16 6 N -0.59 -12.05 2.48 -176.67 -0.44 -12.48 16 7 C 0.19 4.10 3.82 -5.19 -0.02 4.08 16 8 C -0.57 -14.16 7.82 -34.44 -0.27 -14.43 16 9 H 0.09 2.55 8.06 -52.48 -0.42 2.13 16 10 C 0.08 2.05 5.17 -17.82 -0.09 1.96 16 11 N -0.86 -23.50 13.96 55.43 0.77 -22.73 16 12 Si 0.84 18.23 27.01 -169.99 -4.59 13.64 16 13 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16 14 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 15 H -0.26 -5.19 6.54 56.52 0.37 -4.82 16 16 C 0.59 12.84 7.56 -12.93 -0.10 12.75 16 17 O -0.55 -12.50 16.43 5.17 0.08 -12.41 16 18 C 0.01 0.17 6.55 -82.47 -0.54 -0.37 16 19 C -0.09 -1.83 10.60 -38.82 -0.41 -2.24 16 20 C -0.18 -3.27 6.80 -105.46 -0.72 -3.99 16 21 C -0.07 -1.01 10.42 -38.55 -0.40 -1.41 16 22 C -0.23 -3.22 11.03 28.84 0.32 -2.91 16 23 S 0.11 1.88 23.24 -107.50 -2.50 -0.62 16 24 C -0.01 -0.27 8.41 -15.05 -0.13 -0.40 16 25 N -0.50 -10.88 4.83 -7.94 -0.04 -10.92 16 26 H 0.44 10.10 2.74 -40.82 -0.11 9.99 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.73 6.57 -51.93 -0.34 0.39 16 33 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.08 1.37 6.50 -51.93 -0.34 1.04 16 37 H 0.08 1.40 7.40 -51.93 -0.38 1.02 16 38 H 0.05 1.00 7.07 -51.93 -0.37 0.63 16 39 H 0.02 0.52 4.66 -51.93 -0.24 0.28 16 40 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 41 H 0.15 2.56 8.06 -52.49 -0.42 2.14 16 42 H 0.14 1.63 8.06 -52.49 -0.42 1.21 16 43 H 0.16 1.68 8.06 -52.49 -0.42 1.26 16 LS Contribution 358.71 15.07 5.41 5.41 Total: -1.00 -28.16 358.71 -9.43 -37.59 By element: Atomic # 1 Polarization: 19.46 SS G_CDS: -6.02 Total: 13.44 kcal Atomic # 6 Polarization: -8.80 SS G_CDS: -2.10 Total: -10.90 kcal Atomic # 7 Polarization: -46.43 SS G_CDS: 0.30 Total: -46.13 kcal Atomic # 8 Polarization: -12.50 SS G_CDS: 0.08 Total: -12.41 kcal Atomic # 14 Polarization: 18.23 SS G_CDS: -4.59 Total: 13.64 kcal Atomic # 16 Polarization: 1.88 SS G_CDS: -2.50 Total: -0.62 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -28.16 -9.43 -37.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609142957.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.984 kcal (2) G-P(sol) polarization free energy of solvation -28.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds