Wall clock time and date at job start Tue Mar 31 2020 12:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50697 * 109.54938 * 2 1 4 4 O 1.20821 * 119.99844 * 239.82634 * 3 2 1 5 5 O 1.34228 * 119.99720 * 59.81956 * 3 2 1 6 6 C 1.45207 * 116.99916 * 180.02562 * 5 3 2 7 7 C 1.50698 * 109.47029 * 180.02562 * 6 5 3 8 8 C 1.38297 * 119.93202 * 89.99914 * 7 6 5 9 9 C 1.38101 * 120.07230 * 180.02562 * 8 7 6 10 10 C 1.38886 * 119.92536 * 359.97438 * 9 8 7 11 11 O 1.35750 * 120.06440 * 180.02562 * 10 9 8 12 12 C 1.34828 * 117.00075 * 5.53777 * 11 10 9 13 13 H 1.07993 * 120.00518 * 354.94289 * 12 11 10 14 14 C 1.38663 * 119.99751 * 174.94575 * 12 11 10 15 15 N 1.31556 * 120.00220 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 119.99821 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47517 * 59.99414 * 16 14 12 18 18 H 1.48505 * 109.47332 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.46989 * 299.99567 * 16 14 12 20 20 C 1.38874 * 119.86623 * 0.27854 * 10 9 8 21 21 C 1.38110 * 119.92772 * 359.48927 * 20 10 9 22 22 C 1.53182 * 109.61660 * 120.22597 * 2 1 3 23 23 C 1.53089 * 109.16546 * 62.92582 * 22 2 1 24 24 O 1.42903 * 109.41556 * 57.60864 * 23 22 2 25 25 C 1.42899 * 114.10105 * 298.84282 * 24 23 22 26 26 C 1.53093 * 109.41370 * 61.15554 * 25 24 23 27 27 H 1.09003 * 109.46858 * 59.99615 * 1 2 3 28 28 H 1.08998 * 109.47429 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46306 * 300.00136 * 1 2 3 30 30 H 1.09003 * 109.46774 * 59.99981 * 6 5 3 31 31 H 1.09004 * 109.46814 * 300.00199 * 6 5 3 32 32 H 1.07999 * 119.96698 * 0.02562 * 8 7 6 33 33 H 1.07992 * 120.03608 * 179.97438 * 9 8 7 34 34 H 0.96996 * 120.00178 * 179.97438 * 15 14 12 35 35 H 1.07996 * 120.03745 * 179.72497 * 20 10 9 36 36 H 1.07996 * 119.96227 * 180.23396 * 21 20 10 37 37 H 1.08999 * 109.52146 * 182.83530 * 22 2 1 38 38 H 1.09000 * 109.51650 * 303.02139 * 22 2 1 39 39 H 1.09001 * 109.48244 * 297.62581 * 23 22 2 40 40 H 1.08998 * 109.49312 * 177.60072 * 23 22 2 41 41 H 1.08998 * 109.48290 * 301.17773 * 25 24 23 42 42 H 1.08997 * 109.49817 * 181.14379 * 25 24 23 43 43 H 1.09000 * 109.52463 * 182.48912 * 26 25 24 44 44 H 1.08998 * 109.52249 * 62.30070 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0343 1.4201 0.0000 4 8 2.7320 1.8134 -0.9046 5 8 1.7081 2.2481 1.0049 6 6 2.2289 3.6019 0.9390 7 6 1.7624 4.3787 2.1431 8 6 2.5257 4.3880 3.2964 9 6 2.1008 5.0984 4.4018 10 6 0.9057 5.8045 4.3542 11 8 0.4856 6.5042 5.4389 12 6 1.3275 6.5676 6.4901 13 1 2.2510 6.0080 6.4770 14 6 1.0075 7.3515 7.5883 15 7 -0.1172 8.0337 7.6043 16 14 2.1742 7.4399 9.0444 17 1 3.4869 7.9698 8.5956 18 1 1.6059 8.3395 10.0803 19 1 2.3578 6.0812 9.6148 20 6 0.1389 5.7890 3.1964 21 6 0.5717 5.0805 2.0928 22 6 2.0443 -0.7264 1.2467 23 6 1.5931 -2.1885 1.1985 24 8 2.0770 -2.7957 -0.0011 25 6 1.5913 -2.1879 -1.1998 26 6 2.0424 -0.7257 -1.2479 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3632 0.5139 0.8900 30 1 1.8679 4.0862 0.0316 31 1 3.3184 3.5719 0.9261 32 1 3.4551 3.8391 3.3326 33 1 2.6970 5.1049 5.3021 34 1 -0.3412 8.5817 8.3726 35 1 -0.7930 6.3334 3.1579 36 1 -0.0223 5.0711 1.1909 37 1 3.1331 -0.6818 1.2711 38 1 1.6392 -0.2494 2.1392 39 1 0.5041 -2.2336 1.2151 40 1 1.9920 -2.7209 2.0619 41 1 0.5023 -2.2329 -1.2147 42 1 1.9889 -2.7196 -2.0642 43 1 1.6360 -0.2483 -2.1395 44 1 3.1312 -0.6812 -1.2739 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733481258.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:37 Heat of formation + Delta-G solvation = -143.847173 kcal Electronic energy + Delta-G solvation = -26422.692154 eV Core-core repulsion = 22498.671517 eV Total energy + Delta-G solvation = -3924.020637 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.12236 -39.49060 -39.01952 -37.05879 -36.06413 -35.05691 -32.46395 -31.52845 -30.59069 -30.26433 -28.33030 -26.44514 -25.58264 -24.66871 -23.95371 -22.09360 -21.83940 -20.62390 -19.26131 -18.10859 -17.67956 -17.29162 -16.91400 -16.40373 -16.22551 -15.59968 -15.21253 -14.84866 -14.69066 -14.57190 -14.48586 -13.94870 -13.79201 -13.65152 -13.23309 -12.90916 -12.80869 -12.76545 -12.40368 -12.34778 -12.24367 -11.75941 -11.68528 -11.65171 -11.42860 -11.07428 -10.94032 -10.84402 -10.77555 -10.74047 -10.53312 -10.46229 -10.42225 -9.77868 -9.44574 -8.92733 -8.29970 -7.36067 -6.54681 -4.13470 1.91240 2.12136 2.14775 2.86984 3.08183 3.10260 3.12095 3.53917 3.89137 4.12290 4.29692 4.35744 4.52698 4.60629 4.77869 4.83370 4.91466 4.99976 5.12706 5.15983 5.17440 5.21154 5.22070 5.29541 5.37822 5.42284 5.46908 5.58635 5.60694 5.62922 5.73747 5.74968 5.79429 5.96691 6.09996 6.30202 6.49780 6.56635 6.77818 6.82840 6.93961 7.12003 7.23994 7.32737 7.68439 7.75580 7.89885 8.90363 9.58010 10.62647 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.022621 B = 0.002352 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.485253 B =11902.076213 C =12408.774703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.053 4.053 3 C 0.468 3.532 4 O -0.513 6.513 5 O -0.346 6.346 6 C 0.128 3.872 7 C -0.204 4.204 8 C -0.045 4.045 9 C -0.238 4.238 10 C 0.163 3.837 11 O -0.171 6.171 12 C -0.394 4.394 13 H 0.093 0.907 14 C 0.041 3.959 15 N -0.859 5.859 16 Si 0.943 3.057 17 H -0.269 1.269 18 H -0.277 1.277 19 H -0.269 1.269 20 C -0.196 4.196 21 C -0.048 4.048 22 C -0.146 4.146 23 C 0.061 3.939 24 O -0.382 6.382 25 C 0.061 3.939 26 C -0.136 4.136 27 H 0.063 0.937 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.108 0.892 33 H 0.130 0.870 34 H 0.272 0.728 35 H 0.120 0.880 36 H 0.112 0.888 37 H 0.077 0.923 38 H 0.092 0.908 39 H 0.058 0.942 40 H 0.100 0.900 41 H 0.056 0.944 42 H 0.098 0.902 43 H 0.082 0.918 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.162 -17.329 -13.829 22.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.054 4.054 3 C 0.311 3.689 4 O -0.402 6.402 5 O -0.262 6.262 6 C 0.056 3.944 7 C -0.205 4.205 8 C -0.063 4.063 9 C -0.257 4.257 10 C 0.108 3.892 11 O -0.074 6.074 12 C -0.470 4.470 13 H 0.111 0.889 14 C -0.164 4.164 15 N -0.493 5.493 16 Si 0.767 3.233 17 H -0.194 1.194 18 H -0.202 1.202 19 H -0.194 1.194 20 C -0.215 4.215 21 C -0.067 4.067 22 C -0.183 4.183 23 C -0.015 4.015 24 O -0.301 6.301 25 C -0.016 4.016 26 C -0.174 4.174 27 H 0.082 0.918 28 H 0.090 0.910 29 H 0.096 0.904 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.126 0.874 33 H 0.147 0.853 34 H 0.082 0.918 35 H 0.138 0.862 36 H 0.131 0.869 37 H 0.096 0.904 38 H 0.111 0.889 39 H 0.076 0.924 40 H 0.118 0.882 41 H 0.074 0.926 42 H 0.116 0.884 43 H 0.101 0.899 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.156 -17.010 -13.846 22.038 hybrid contribution 0.575 0.560 0.668 1.044 sum 2.731 -16.449 -13.178 21.253 Atomic orbital electron populations 1.21988 0.91489 1.03220 1.03839 1.20552 0.97999 0.88630 0.98241 1.23504 0.77445 0.88321 0.79671 1.90636 1.35749 1.77305 1.36503 1.86646 1.69180 1.24353 1.46059 1.21711 0.97994 0.77447 0.97245 1.18850 0.99505 1.06427 0.95741 1.20610 0.97804 0.96052 0.91827 1.21139 0.99585 1.04901 1.00063 1.19441 0.91738 0.90217 0.87786 1.83976 1.41925 1.61067 1.20385 1.21324 1.02488 1.29621 0.93592 0.88921 1.25328 0.97302 0.95213 0.98590 1.70024 1.21928 1.26629 1.30694 0.85756 0.79333 0.78771 0.79457 1.19404 1.20184 1.19390 1.20188 1.02232 1.07100 0.91995 1.20498 0.94219 0.95018 0.96952 1.22262 1.02464 0.96489 0.97117 1.22638 0.98797 0.92180 0.87895 1.87948 1.71828 1.56548 1.13764 1.22647 0.98605 0.92279 0.88032 1.22151 1.02949 0.95709 0.96572 0.91765 0.90951 0.90425 0.91260 0.91306 0.87377 0.85270 0.91782 0.86210 0.86949 0.90434 0.88924 0.92406 0.88220 0.92620 0.88383 0.89932 0.89995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 7.87 37.16 0.29 -0.93 16 2 C -0.05 -0.52 0.71 -155.47 -0.11 -0.63 16 3 C 0.47 6.21 6.56 36.00 0.24 6.45 16 4 O -0.51 -7.98 15.72 -18.75 -0.29 -8.28 16 5 O -0.35 -5.01 10.04 -39.25 -0.39 -5.40 16 6 C 0.13 1.91 5.59 36.00 0.20 2.11 16 7 C -0.20 -3.50 5.52 -104.58 -0.58 -4.08 16 8 C -0.04 -0.80 9.69 -39.61 -0.38 -1.19 16 9 C -0.24 -5.02 9.17 -39.39 -0.36 -5.38 16 10 C 0.16 3.83 6.65 -39.11 -0.26 3.57 16 11 O -0.17 -4.76 9.76 0.05 0.00 -4.76 16 12 C -0.39 -10.73 9.49 30.89 0.29 -10.43 16 13 H 0.09 2.32 5.20 -52.49 -0.27 2.04 16 14 C 0.04 1.09 5.49 -17.51 -0.10 1.00 16 15 N -0.86 -24.60 13.67 55.48 0.76 -23.84 16 16 Si 0.94 19.97 29.55 -169.99 -5.02 14.95 16 17 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 18 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 19 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 20 C -0.20 -4.02 9.99 -39.39 -0.39 -4.41 16 21 C -0.05 -0.85 9.69 -39.60 -0.38 -1.23 16 22 C -0.15 -1.32 4.86 -26.59 -0.13 -1.45 16 23 C 0.06 0.47 6.57 37.20 0.24 0.72 16 24 O -0.38 -3.55 10.77 -35.23 -0.38 -3.93 16 25 C 0.06 0.45 6.57 37.21 0.24 0.69 16 26 C -0.14 -1.22 4.23 -26.59 -0.11 -1.33 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.47 5.02 -51.93 -0.26 0.21 16 29 H 0.08 0.70 8.11 -51.93 -0.42 0.27 16 30 H 0.07 0.97 8.08 -51.93 -0.42 0.55 16 31 H 0.07 0.98 8.08 -51.93 -0.42 0.56 16 32 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 33 H 0.13 2.71 5.64 -52.49 -0.30 2.41 16 34 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 35 H 0.12 2.35 8.06 -52.49 -0.42 1.93 16 36 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 37 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.06 0.38 6.61 -51.93 -0.34 0.03 16 40 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.34 6.60 -51.93 -0.34 0.00 16 42 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.08 0.84 8.02 -51.93 -0.42 0.42 16 LS Contribution 362.17 15.07 5.46 5.46 Total: -1.00 -31.33 362.17 -7.30 -38.64 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -6.13 Total: 3.69 kcal Atomic # 6 Polarization: -15.23 SS G_CDS: -1.30 Total: -16.52 kcal Atomic # 7 Polarization: -24.60 SS G_CDS: 0.76 Total: -23.84 kcal Atomic # 8 Polarization: -21.30 SS G_CDS: -1.07 Total: -22.37 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.95 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.33 -7.30 -38.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733481258.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.211 kcal (2) G-P(sol) polarization free energy of solvation -31.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds