Wall clock time and date at job start Tue Mar 31 2020 12:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50697 * 109.54938 * 2 1 4 4 O 1.20821 * 119.99844 * 239.82634 * 3 2 1 5 5 O 1.34228 * 119.99720 * 59.81956 * 3 2 1 6 6 C 1.45207 * 116.99916 * 180.02562 * 5 3 2 7 7 C 1.50698 * 109.47029 * 180.02562 * 6 5 3 8 8 C 1.38297 * 119.93202 * 89.99914 * 7 6 5 9 9 C 1.38101 * 120.07230 * 180.02562 * 8 7 6 10 10 C 1.38886 * 119.92536 * 359.97438 * 9 8 7 11 11 O 1.35750 * 120.06440 * 180.02562 * 10 9 8 12 12 C 1.34828 * 117.00075 * 5.53777 * 11 10 9 13 13 H 1.07993 * 120.00518 * 354.94289 * 12 11 10 14 14 C 1.38663 * 119.99751 * 174.94575 * 12 11 10 15 15 N 1.31556 * 120.00220 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 119.99821 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47517 * 59.99414 * 16 14 12 18 18 H 1.48505 * 109.47332 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.46989 * 299.99567 * 16 14 12 20 20 C 1.38874 * 119.86623 * 0.27854 * 10 9 8 21 21 C 1.38110 * 119.92772 * 359.48927 * 20 10 9 22 22 C 1.53182 * 109.61660 * 120.22597 * 2 1 3 23 23 C 1.53089 * 109.16546 * 62.92582 * 22 2 1 24 24 O 1.42903 * 109.41556 * 57.60864 * 23 22 2 25 25 C 1.42899 * 114.10105 * 298.84282 * 24 23 22 26 26 C 1.53093 * 109.41370 * 61.15554 * 25 24 23 27 27 H 1.09003 * 109.46858 * 59.99615 * 1 2 3 28 28 H 1.08998 * 109.47429 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46306 * 300.00136 * 1 2 3 30 30 H 1.09003 * 109.46774 * 59.99981 * 6 5 3 31 31 H 1.09004 * 109.46814 * 300.00199 * 6 5 3 32 32 H 1.07999 * 119.96698 * 0.02562 * 8 7 6 33 33 H 1.07992 * 120.03608 * 179.97438 * 9 8 7 34 34 H 0.96996 * 120.00178 * 179.97438 * 15 14 12 35 35 H 1.07996 * 120.03745 * 179.72497 * 20 10 9 36 36 H 1.07996 * 119.96227 * 180.23396 * 21 20 10 37 37 H 1.08999 * 109.52146 * 182.83530 * 22 2 1 38 38 H 1.09000 * 109.51650 * 303.02139 * 22 2 1 39 39 H 1.09001 * 109.48244 * 297.62581 * 23 22 2 40 40 H 1.08998 * 109.49312 * 177.60072 * 23 22 2 41 41 H 1.08998 * 109.48290 * 301.17773 * 25 24 23 42 42 H 1.08997 * 109.49817 * 181.14379 * 25 24 23 43 43 H 1.09000 * 109.52463 * 182.48912 * 26 25 24 44 44 H 1.08998 * 109.52249 * 62.30070 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0343 1.4201 0.0000 4 8 2.7320 1.8134 -0.9046 5 8 1.7081 2.2481 1.0049 6 6 2.2289 3.6019 0.9390 7 6 1.7624 4.3787 2.1431 8 6 2.5257 4.3880 3.2964 9 6 2.1008 5.0984 4.4018 10 6 0.9057 5.8045 4.3542 11 8 0.4856 6.5042 5.4389 12 6 1.3275 6.5676 6.4901 13 1 2.2510 6.0080 6.4770 14 6 1.0075 7.3515 7.5883 15 7 -0.1172 8.0337 7.6043 16 14 2.1742 7.4399 9.0444 17 1 3.4869 7.9698 8.5956 18 1 1.6059 8.3395 10.0803 19 1 2.3578 6.0812 9.6148 20 6 0.1389 5.7890 3.1964 21 6 0.5717 5.0805 2.0928 22 6 2.0443 -0.7264 1.2467 23 6 1.5931 -2.1885 1.1985 24 8 2.0770 -2.7957 -0.0011 25 6 1.5913 -2.1879 -1.1998 26 6 2.0424 -0.7257 -1.2479 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3632 0.5139 0.8900 30 1 1.8679 4.0862 0.0316 31 1 3.3184 3.5719 0.9261 32 1 3.4551 3.8391 3.3326 33 1 2.6970 5.1049 5.3021 34 1 -0.3412 8.5817 8.3726 35 1 -0.7930 6.3334 3.1579 36 1 -0.0223 5.0711 1.1909 37 1 3.1331 -0.6818 1.2711 38 1 1.6392 -0.2494 2.1392 39 1 0.5041 -2.2336 1.2151 40 1 1.9920 -2.7209 2.0619 41 1 0.5023 -2.2329 -1.2147 42 1 1.9889 -2.7196 -2.0642 43 1 1.6360 -0.2483 -2.1395 44 1 3.1312 -0.6812 -1.2739 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733481258.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:36 Heat of formation + Delta-G solvation = -161.803116 kcal Electronic energy + Delta-G solvation = -26423.470782 eV Core-core repulsion = 22498.671517 eV Total energy + Delta-G solvation = -3924.799265 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.08375 -40.87101 -40.17129 -38.57888 -37.38129 -35.82004 -34.37643 -32.25303 -32.03707 -31.83658 -29.02613 -27.91557 -26.98391 -25.87616 -24.61458 -23.71065 -22.84587 -22.14097 -20.08901 -19.90849 -18.94420 -18.58998 -18.09559 -17.47050 -16.93149 -16.63560 -16.41710 -16.20483 -15.88403 -15.74996 -15.56712 -15.45655 -15.16069 -14.90581 -14.47218 -14.28663 -14.19130 -13.74884 -13.49830 -13.40710 -13.23975 -13.03869 -12.97651 -12.61817 -12.45448 -12.38047 -12.34274 -12.26127 -12.14828 -11.73323 -11.63273 -11.57901 -11.25214 -11.21995 -10.82290 -10.46529 -9.86288 -9.07758 -8.49874 -6.18419 0.41058 0.53392 1.10012 1.35455 1.44445 1.51430 1.75289 2.16328 2.79261 2.96793 3.11763 3.37295 3.44149 3.56203 3.64101 3.83865 3.88196 3.94168 3.97446 4.12275 4.24480 4.26340 4.31479 4.34656 4.52106 4.55074 4.62243 4.66723 4.71696 4.75117 4.83276 4.85344 4.96111 4.96635 5.07033 5.09940 5.10418 5.20101 5.31368 5.38396 5.50263 5.63970 5.66537 5.98767 6.09538 6.24847 6.66936 6.94444 7.72061 8.72521 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.022621 B = 0.002352 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.485253 B =11902.076213 C =12408.774703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.052 4.052 3 C 0.468 3.532 4 O -0.537 6.537 5 O -0.351 6.351 6 C 0.129 3.871 7 C -0.181 4.181 8 C -0.043 4.043 9 C -0.244 4.244 10 C 0.126 3.874 11 O -0.225 6.225 12 C -0.417 4.417 13 H 0.104 0.896 14 C -0.020 4.020 15 N -0.917 5.917 16 Si 1.018 2.982 17 H -0.258 1.258 18 H -0.272 1.272 19 H -0.256 1.256 20 C -0.205 4.205 21 C -0.041 4.041 22 C -0.144 4.144 23 C 0.062 3.938 24 O -0.400 6.400 25 C 0.061 3.939 26 C -0.133 4.133 27 H 0.067 0.933 28 H 0.094 0.906 29 H 0.070 0.930 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.139 0.861 33 H 0.124 0.876 34 H 0.274 0.726 35 H 0.120 0.880 36 H 0.149 0.851 37 H 0.065 0.935 38 H 0.091 0.909 39 H 0.074 0.926 40 H 0.110 0.890 41 H 0.075 0.925 42 H 0.112 0.888 43 H 0.085 0.915 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.998 -19.769 -15.439 25.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.053 4.053 3 C 0.312 3.688 4 O -0.427 6.427 5 O -0.268 6.268 6 C 0.056 3.944 7 C -0.182 4.182 8 C -0.061 4.061 9 C -0.264 4.264 10 C 0.075 3.925 11 O -0.131 6.131 12 C -0.492 4.492 13 H 0.121 0.879 14 C -0.218 4.218 15 N -0.555 5.555 16 Si 0.837 3.163 17 H -0.182 1.182 18 H -0.196 1.196 19 H -0.180 1.180 20 C -0.224 4.224 21 C -0.058 4.058 22 C -0.182 4.182 23 C -0.015 4.015 24 O -0.319 6.319 25 C -0.015 4.015 26 C -0.171 4.171 27 H 0.086 0.914 28 H 0.113 0.887 29 H 0.089 0.911 30 H 0.101 0.899 31 H 0.096 0.904 32 H 0.157 0.843 33 H 0.142 0.858 34 H 0.083 0.917 35 H 0.138 0.862 36 H 0.167 0.833 37 H 0.084 0.916 38 H 0.110 0.890 39 H 0.093 0.907 40 H 0.128 0.872 41 H 0.093 0.907 42 H 0.130 0.870 43 H 0.104 0.896 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.006 -19.494 -15.508 25.091 hybrid contribution 0.366 1.122 0.784 1.417 sum 3.372 -18.372 -14.724 23.785 Atomic orbital electron populations 1.22006 0.89901 1.04669 1.03672 1.20700 0.99173 0.86315 0.99115 1.24217 0.76711 0.89145 0.78701 1.90630 1.36909 1.77881 1.37314 1.86623 1.69309 1.24074 1.46785 1.21655 0.98628 0.77834 0.96287 1.19212 0.98347 1.04661 0.95951 1.20936 0.98969 0.95255 0.90974 1.21239 0.98897 1.05123 1.01096 1.19992 0.93476 0.91020 0.88004 1.83948 1.43427 1.63877 1.21849 1.21813 1.03082 1.30210 0.94135 0.87879 1.26599 0.99122 0.94540 1.01575 1.70168 1.24526 1.28742 1.32045 0.84653 0.77022 0.79327 0.75281 1.18201 1.19643 1.18044 1.20441 1.02224 1.07599 0.92131 1.20881 0.94508 0.93398 0.97062 1.22263 1.01727 0.97562 0.96623 1.22737 0.99808 0.91005 0.87908 1.87935 1.72437 1.56950 1.14572 1.22777 0.99760 0.90992 0.87962 1.22145 1.01816 0.96901 0.96216 0.91430 0.88736 0.91107 0.89865 0.90352 0.84293 0.85797 0.91700 0.86205 0.83312 0.91621 0.89034 0.90743 0.87194 0.90735 0.87024 0.89600 0.91799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 7.87 71.98 0.57 -1.39 16 2 C -0.05 -0.90 0.71 -52.81 -0.04 -0.94 16 3 C 0.47 11.37 6.56 71.24 0.47 11.84 16 4 O -0.54 -15.66 15.72 21.98 0.35 -15.32 16 5 O -0.35 -9.18 10.04 -51.40 -0.52 -9.70 16 6 C 0.13 3.39 5.59 71.24 0.40 3.79 16 7 C -0.18 -5.70 5.52 -19.84 -0.11 -5.81 16 8 C -0.04 -1.48 9.69 22.25 0.22 -1.26 16 9 C -0.24 -10.35 9.17 22.39 0.21 -10.15 16 10 C 0.13 6.13 6.65 22.58 0.15 6.28 16 11 O -0.23 -13.24 9.76 -22.72 -0.22 -13.47 16 12 C -0.42 -23.71 9.49 67.92 0.64 -23.07 16 13 H 0.10 5.35 5.20 -2.91 -0.02 5.33 16 14 C -0.02 -1.13 5.49 84.84 0.47 -0.66 16 15 N -0.92 -55.31 13.67 21.62 0.30 -55.01 16 16 Si 1.02 41.86 29.55 68.60 2.03 43.88 16 17 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 18 H -0.27 -10.77 7.11 99.48 0.71 -10.07 16 19 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 20 C -0.20 -8.43 9.99 22.39 0.22 -8.21 16 21 C -0.04 -1.33 9.69 22.25 0.22 -1.11 16 22 C -0.14 -2.31 4.86 30.68 0.15 -2.16 16 23 C 0.06 0.78 6.57 72.01 0.47 1.26 16 24 O -0.40 -6.39 10.77 -148.98 -1.60 -8.00 16 25 C 0.06 0.73 6.57 72.01 0.47 1.20 16 26 C -0.13 -2.09 4.23 30.69 0.13 -1.96 16 27 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.09 0.85 5.02 -2.39 -0.01 0.84 16 29 H 0.07 1.07 8.11 -2.39 -0.02 1.05 16 30 H 0.08 2.02 8.08 -2.39 -0.02 2.00 16 31 H 0.08 1.97 8.08 -2.39 -0.02 1.95 16 32 H 0.14 3.88 8.06 -2.91 -0.02 3.85 16 33 H 0.12 5.29 5.64 -2.91 -0.02 5.28 16 34 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 35 H 0.12 4.83 8.06 -2.91 -0.02 4.81 16 36 H 0.15 3.82 8.06 -2.91 -0.02 3.79 16 37 H 0.07 1.19 8.14 -2.39 -0.02 1.18 16 38 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.07 0.71 6.61 -2.39 -0.02 0.69 16 40 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.07 0.62 6.60 -2.39 -0.02 0.60 16 42 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.06 1.23 8.02 -2.39 -0.02 1.21 16 Total: -1.00 -71.73 362.17 5.97 -65.77 By element: Atomic # 1 Polarization: 23.18 SS G_CDS: 1.01 Total: 24.19 kcal Atomic # 6 Polarization: -36.98 SS G_CDS: 4.63 Total: -32.35 kcal Atomic # 7 Polarization: -55.31 SS G_CDS: 0.30 Total: -55.01 kcal Atomic # 8 Polarization: -44.48 SS G_CDS: -2.00 Total: -46.48 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.88 kcal Total: -71.73 5.97 -65.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733481258.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.037 kcal (2) G-P(sol) polarization free energy of solvation -71.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds