Wall clock time and date at job start Tue Mar 31 2020 12:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47411 * 2 1 4 4 C 1.53011 * 109.46861 * 119.99877 * 2 1 3 5 5 N 1.46900 * 109.46878 * 179.33372 * 4 2 1 6 6 C 1.46899 * 110.99837 * 156.84804 * 5 4 2 7 7 C 1.50696 * 109.47242 * 288.18403 * 6 5 4 8 8 H 1.07994 * 120.00034 * 4.90049 * 7 6 5 9 9 C 1.37875 * 120.00192 * 184.89854 * 7 6 5 10 10 N 1.31524 * 119.99963 * 0.02562 * 9 7 6 11 11 Si 1.86794 * 120.00226 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47440 * 60.00122 * 11 9 7 13 13 H 1.48510 * 109.47187 * 180.02562 * 11 9 7 14 14 H 1.48506 * 109.47153 * 299.99694 * 11 9 7 15 15 C 1.46904 * 110.99942 * 280.80253 * 5 4 2 16 16 C 1.50701 * 109.47150 * 78.32839 * 15 5 4 17 17 N 1.30335 * 125.45754 * 75.02799 * 16 15 5 18 18 C 1.34131 * 108.93743 * 179.76775 * 17 16 15 19 19 C 1.36057 * 107.49321 * 0.42427 * 18 17 16 20 20 C 1.47217 * 126.60815 * 179.83775 * 19 18 17 21 21 C 1.35061 * 125.28653 * 359.41852 * 20 19 18 22 22 C 1.37926 * 114.65275 * 179.79076 * 21 20 19 23 23 C 1.33615 * 115.09116 * 0.49620 * 22 21 20 24 24 S 1.75852 * 109.79937 * 359.73276 * 23 22 21 25 25 O 1.34104 * 125.45519 * 255.06348 * 16 15 5 26 26 H 1.09001 * 109.47422 * 300.00483 * 1 2 3 27 27 H 1.09004 * 109.46968 * 60.00599 * 1 2 3 28 28 H 1.09000 * 109.47462 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47422 * 239.99517 * 2 1 3 30 30 H 1.09002 * 109.47425 * 64.93842 * 3 2 1 31 31 H 1.09001 * 109.47255 * 184.93606 * 3 2 1 32 32 H 1.09003 * 109.47089 * 304.93479 * 3 2 1 33 33 H 1.08997 * 109.47081 * 59.33534 * 4 2 1 34 34 H 1.08994 * 109.46964 * 299.33172 * 4 2 1 35 35 H 1.09003 * 109.46777 * 48.18211 * 6 5 4 36 36 H 1.08998 * 109.46925 * 168.17681 * 6 5 4 37 37 H 0.96999 * 120.00050 * 179.97438 * 10 9 7 38 38 H 1.08997 * 109.46858 * 318.32793 * 15 5 4 39 39 H 1.09003 * 109.46707 * 198.32916 * 15 5 4 40 40 H 1.08007 * 126.25588 * 180.26781 * 18 17 16 41 41 H 1.08003 * 122.66654 * 359.96716 * 21 20 19 42 42 H 1.08004 * 122.45481 * 180.20440 * 22 21 20 43 43 H 1.07998 * 125.10387 * 179.75804 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2494 5 7 3.5088 -0.7353 1.2413 6 6 4.0411 -0.8985 2.6007 7 6 3.8236 0.3720 3.3814 8 1 3.2689 1.1876 2.9417 9 6 4.3326 0.4931 4.6570 10 7 5.0085 -0.5000 5.1923 11 14 4.0635 2.0683 5.6243 12 1 2.6069 2.3012 5.7958 13 1 4.7061 1.9463 6.9576 14 1 4.6642 3.2098 4.8885 15 6 4.0205 -1.7818 0.3464 16 6 3.9288 -1.3103 -1.0820 17 7 4.7176 -0.4367 -1.6419 18 6 4.3427 -0.2669 -2.9185 19 6 3.2678 -1.0713 -3.1395 20 6 2.5201 -1.2108 -4.4000 21 6 2.7860 -0.5422 -5.5430 22 6 1.9474 -0.8454 -6.5952 23 6 0.9967 -1.7435 -6.3215 24 16 1.1371 -2.2686 -4.6491 25 8 3.0222 -1.7218 -1.9804 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.7508 1.9302 0.9309 31 1 3.1264 1.4437 -0.0884 32 1 1.6063 1.9812 -0.8425 33 1 1.6669 -1.7454 1.2554 34 1 1.6864 -0.2006 2.1392 35 1 3.5264 -1.7219 3.0960 36 1 5.1081 -1.1154 2.5495 37 1 5.3669 -0.4147 6.0896 38 1 3.4261 -2.6872 0.4690 39 1 5.0608 -1.9940 0.5930 40 1 4.8074 0.3902 -3.6387 41 1 3.5928 0.1708 -5.6270 42 1 2.0488 -0.3869 -7.5679 43 1 0.2538 -2.0946 -7.0223 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739914605.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:07 Heat of formation + Delta-G solvation = 39.757149 kcal Electronic energy + Delta-G solvation = -24874.530893 eV Core-core repulsion = 21433.517559 eV Total energy + Delta-G solvation = -3441.013334 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -44.35957 -39.21768 -38.69667 -35.91302 -35.58983 -34.57574 -32.97255 -30.53179 -28.74121 -27.96740 -27.49487 -25.95128 -25.20234 -23.49674 -22.89341 -22.00946 -21.00064 -20.07836 -19.21908 -18.51373 -17.90077 -17.37486 -16.80911 -16.59779 -16.26122 -15.86569 -15.57065 -15.15337 -14.95137 -14.46312 -14.26816 -14.12509 -14.08792 -13.90076 -13.60612 -13.40528 -13.16726 -13.12736 -12.96620 -12.74874 -12.61527 -12.58696 -12.30715 -12.07621 -11.83106 -11.80636 -11.53501 -11.48814 -11.45690 -11.29582 -10.73954 -10.57399 -9.55137 -9.13243 -8.94959 -8.17161 -6.25100 -0.58111 0.48442 0.73331 0.98478 1.41733 1.44670 1.44957 1.52623 1.63366 1.97587 2.42581 3.01355 3.14186 3.27824 3.68569 3.90668 3.97222 4.09067 4.20120 4.22575 4.28202 4.33887 4.39001 4.53990 4.58510 4.71628 4.77724 4.82370 4.86824 4.87150 5.00604 5.06061 5.10982 5.16136 5.20541 5.24297 5.27103 5.29111 5.46724 5.48038 5.55686 5.68065 6.04621 6.28871 6.50576 6.76823 6.88096 7.42947 8.93249 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.024163 B = 0.003142 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.522473 B = 8908.089463 C = 9195.110771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.095 4.095 3 C -0.122 4.122 4 C 0.067 3.933 5 N -0.529 5.529 6 C 0.213 3.787 7 C -0.514 4.514 8 H 0.060 0.940 9 C 0.006 3.994 10 N -0.932 5.932 11 Si 0.962 3.038 12 H -0.268 1.268 13 H -0.283 1.283 14 H -0.273 1.273 15 C 0.143 3.857 16 C 0.221 3.779 17 N -0.485 5.485 18 C -0.016 4.016 19 C 0.006 3.994 20 C -0.143 4.143 21 C -0.100 4.100 22 C -0.137 4.137 23 C -0.197 4.197 24 S 0.105 5.895 25 O -0.206 6.206 26 H 0.056 0.944 27 H 0.063 0.937 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.041 0.959 31 H 0.043 0.957 32 H 0.050 0.950 33 H 0.032 0.968 34 H 0.065 0.935 35 H -0.026 1.026 36 H 0.014 0.986 37 H 0.264 0.736 38 H 0.072 0.928 39 H 0.108 0.892 40 H 0.212 0.788 41 H 0.166 0.834 42 H 0.179 0.821 43 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.097 -2.321 -24.612 26.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.114 4.114 3 C -0.179 4.179 4 C -0.061 4.061 5 N -0.254 5.254 6 C 0.088 3.912 7 C -0.553 4.553 8 H 0.078 0.922 9 C -0.192 4.192 10 N -0.573 5.573 11 Si 0.787 3.213 12 H -0.193 1.193 13 H -0.209 1.209 14 H -0.198 1.198 15 C 0.014 3.986 16 C 0.014 3.986 17 N -0.213 5.213 18 C -0.158 4.158 19 C -0.048 4.048 20 C -0.260 4.260 21 C -0.132 4.132 22 C -0.166 4.166 23 C -0.333 4.333 24 S 0.371 5.629 25 O -0.094 6.094 26 H 0.075 0.925 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.050 0.950 34 H 0.084 0.916 35 H -0.008 1.008 36 H 0.032 0.968 37 H 0.073 0.927 38 H 0.090 0.910 39 H 0.126 0.874 40 H 0.229 0.771 41 H 0.183 0.817 42 H 0.196 0.804 43 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -9.221 -2.716 -23.385 25.284 hybrid contribution 0.221 0.433 0.164 0.513 sum -9.000 -2.283 -23.221 25.009 Atomic orbital electron populations 1.21734 0.93761 1.01903 1.02056 1.21240 0.96209 0.96633 0.97286 1.21524 1.00774 0.95472 1.00138 1.22215 0.86838 0.98300 0.98725 1.61780 1.08216 1.44882 1.10523 1.19419 0.93841 0.95299 0.82660 1.21343 1.34040 1.01091 0.98816 0.92187 1.25778 0.94960 0.99786 0.98692 1.70055 1.37489 1.33394 1.16342 0.85548 0.78629 0.79659 0.77457 1.19315 1.20867 1.19799 1.20490 1.03145 0.93178 0.81816 1.26134 0.85168 0.93755 0.93501 1.70387 1.27925 1.15375 1.07626 1.23807 0.96176 1.02273 0.93544 1.20552 0.99795 0.99246 0.85223 1.21592 1.03157 1.07939 0.93338 1.20660 1.02002 1.00424 0.90087 1.20371 0.95246 0.99719 1.01252 1.26247 1.05418 1.03611 0.97986 1.84666 1.26683 1.42377 1.09183 1.84497 1.49198 1.56116 1.19633 0.92530 0.91841 0.92376 0.91945 0.93950 0.93816 0.93107 0.95029 0.91623 1.00846 0.96807 0.92733 0.91043 0.87391 0.77109 0.81695 0.80407 0.78558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.77 9.19 71.98 0.66 -3.11 16 2 C -0.09 -3.20 2.64 -10.79 -0.03 -3.23 16 3 C -0.12 -4.34 8.97 71.98 0.65 -3.69 16 4 C 0.07 2.61 4.26 86.31 0.37 2.98 16 5 N -0.53 -22.83 3.71 -905.35 -3.36 -26.18 16 6 C 0.21 11.06 4.71 85.56 0.40 11.47 16 7 C -0.51 -28.88 8.39 25.60 0.21 -28.66 16 8 H 0.06 3.36 7.58 -2.91 -0.02 3.33 16 9 C 0.01 0.34 5.46 84.65 0.46 0.80 16 10 N -0.93 -55.50 13.29 21.45 0.28 -55.21 16 11 Si 0.96 44.62 29.54 68.60 2.03 46.65 16 12 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 13 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 14 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 15 C 0.14 5.29 5.65 85.56 0.48 5.77 16 16 C 0.22 7.77 5.92 88.33 0.52 8.29 16 17 N -0.48 -17.32 11.27 -302.55 -3.41 -20.73 16 18 C -0.02 -0.45 11.53 83.83 0.97 0.52 16 19 C 0.01 0.17 7.21 24.12 0.17 0.34 16 20 C -0.14 -3.16 6.43 23.90 0.15 -3.00 16 21 C -0.10 -1.59 9.85 21.46 0.21 -1.37 16 22 C -0.14 -1.59 10.16 21.15 0.21 -1.38 16 23 C -0.20 -2.42 11.22 66.77 0.75 -1.67 16 24 S 0.11 2.02 23.31 -56.49 -1.32 0.70 16 25 O -0.21 -6.67 8.94 -9.29 -0.08 -6.75 16 26 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 28 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.06 2.16 4.04 -2.39 -0.01 2.15 16 30 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.04 1.78 7.78 -2.39 -0.02 1.77 16 32 H 0.05 1.57 8.14 -2.39 -0.02 1.56 16 33 H 0.03 1.16 7.63 -2.39 -0.02 1.14 16 34 H 0.07 2.84 6.95 -2.39 -0.02 2.82 16 35 H -0.03 -1.43 8.05 -2.39 -0.02 -1.45 16 36 H 0.01 0.77 7.66 -2.39 -0.02 0.76 16 37 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 38 H 0.07 2.38 7.63 -2.39 -0.02 2.36 16 39 H 0.11 4.01 7.60 -2.39 -0.02 3.99 16 40 H 0.21 4.30 7.84 -2.91 -0.02 4.28 16 41 H 0.17 1.90 7.79 -2.91 -0.02 1.88 16 42 H 0.18 0.94 8.06 -2.91 -0.02 0.92 16 43 H 0.20 1.19 8.06 -2.91 -0.02 1.17 16 Total: -1.00 -67.10 368.65 1.35 -65.75 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: 1.00 Total: 11.73 kcal Atomic # 6 Polarization: -22.16 SS G_CDS: 6.20 Total: -15.95 kcal Atomic # 7 Polarization: -95.64 SS G_CDS: -6.48 Total: -102.12 kcal Atomic # 8 Polarization: -6.67 SS G_CDS: -0.08 Total: -6.75 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Atomic # 16 Polarization: 2.02 SS G_CDS: -1.32 Total: 0.70 kcal Total: -67.10 1.35 -65.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739914605.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.509 kcal (2) G-P(sol) polarization free energy of solvation -67.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds