Wall clock time and date at job start Tue Mar 31 2020 12:57:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47095 * 2 1 4 4 C 1.53004 * 109.47304 * 179.97438 * 3 2 1 5 5 O 1.45199 * 109.47274 * 179.97438 * 4 3 2 6 6 C 1.34224 * 116.99849 * 179.97438 * 5 4 3 7 7 O 1.20827 * 120.00514 * 0.02562 * 6 5 4 8 8 C 1.50703 * 120.00112 * 179.97438 * 6 5 4 9 9 H 1.09001 * 109.46548 * 60.00359 * 8 6 5 10 10 C 1.53005 * 109.47171 * 300.00653 * 8 6 5 11 11 O 1.45193 * 109.47553 * 180.02562 * 8 6 5 12 12 C 1.34700 * 117.00384 * 210.00267 * 11 8 6 13 13 O 1.21474 * 120.00106 * 359.97438 * 12 11 8 14 14 C 1.47766 * 120.00394 * 179.97438 * 12 11 8 15 15 C 1.39966 * 120.02814 * 0.24738 * 14 12 11 16 16 C 1.38327 * 120.35269 * 180.27839 * 15 14 12 17 17 C 1.37759 * 120.41275 * 359.45101 * 16 15 14 18 18 C 1.40751 * 120.05696 * 0.29580 * 17 16 15 19 19 C 1.41433 * 120.17933 * 179.97438 * 18 17 16 20 20 H 1.08003 * 119.99891 * 24.46790 * 19 18 17 21 21 C 1.39935 * 120.00320 * 204.46981 * 19 18 17 22 22 N 1.30826 * 119.99717 * 17.89632 * 21 19 18 23 23 Si 1.86800 * 120.00295 * 197.89401 * 21 19 18 24 24 H 1.48502 * 109.47026 * 94.69105 * 23 21 19 25 25 H 1.48495 * 109.47256 * 214.69458 * 23 21 19 26 26 H 1.48501 * 109.47008 * 334.69114 * 23 21 19 27 27 C 1.39051 * 120.03287 * 180.02562 * 14 12 11 28 28 H 1.09000 * 109.47221 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.47551 * 300.00161 * 1 2 3 30 30 H 1.08999 * 109.47398 * 60.00480 * 1 2 3 31 31 H 1.08995 * 109.47093 * 239.99400 * 2 1 3 32 32 H 1.09008 * 109.46854 * 119.99764 * 2 1 3 33 33 H 1.08995 * 109.47640 * 59.99735 * 3 2 1 34 34 H 1.09008 * 109.47077 * 299.99627 * 3 2 1 35 35 H 1.09000 * 109.46779 * 59.99806 * 4 3 2 36 36 H 1.08998 * 109.46898 * 299.99914 * 4 3 2 37 37 H 1.08997 * 109.46717 * 299.99950 * 10 8 6 38 38 H 1.09003 * 109.47231 * 59.99658 * 10 8 6 39 39 H 1.09002 * 109.46920 * 179.97438 * 10 8 6 40 40 H 1.07995 * 119.82993 * 0.02562 * 15 14 12 41 41 H 1.07994 * 119.79179 * 179.72304 * 16 15 14 42 42 H 1.08003 * 119.97162 * 180.27341 * 17 16 15 43 43 H 0.97005 * 120.00153 * 179.97438 * 22 21 19 44 44 H 1.07997 * 120.20561 * 0.02562 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 8 4.0540 2.8115 0.0000 6 6 5.3846 2.9873 0.0010 7 8 6.1207 2.0292 0.0019 8 6 5.9607 4.3799 -0.0001 9 1 5.6240 4.9130 0.8890 10 6 5.4902 5.1255 -1.2506 11 8 7.4106 4.3040 0.0007 12 6 8.0755 5.3105 0.6001 13 8 7.4608 6.2270 1.1079 14 6 9.5525 5.3000 0.6400 15 6 10.2617 4.2470 0.0506 16 6 11.6443 4.2274 0.0890 17 6 12.3395 5.2492 0.6976 18 6 11.6441 6.3193 1.2912 19 6 12.3552 7.3694 1.9172 20 1 13.3728 7.5822 1.6243 21 6 11.7406 8.1326 2.9162 22 7 10.6698 7.6821 3.5178 23 14 12.4489 9.7947 3.3907 24 1 11.7533 10.8644 2.6309 25 1 12.2577 10.0169 4.8464 26 1 13.8990 9.8240 3.0718 27 6 10.2394 6.3384 1.2591 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.6766 1.9564 0.8899 34 1 1.6766 1.9563 -0.8901 35 1 3.9336 0.9285 -0.8891 36 1 3.9329 0.9289 0.8909 37 1 5.8268 4.5923 -2.1397 38 1 4.4016 5.1825 -1.2516 39 1 5.9065 6.1329 -1.2512 40 1 9.7265 3.4434 -0.4333 41 1 12.1821 3.4082 -0.3648 42 1 13.4191 5.2289 0.7196 43 1 10.2438 8.2109 4.2105 44 1 9.6967 7.1547 1.7125 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744788374.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:13 Heat of formation + Delta-G solvation = -173.176434 kcal Electronic energy + Delta-G solvation = -25911.809184 eV Core-core repulsion = 21986.516735 eV Total energy + Delta-G solvation = -3925.292449 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.81836 -39.78001 -37.54164 -36.96541 -35.87970 -35.32614 -33.79160 -32.22374 -30.26434 -29.76879 -29.52073 -25.61900 -25.31479 -24.12398 -22.95752 -21.58374 -21.07312 -20.79233 -19.85721 -18.15770 -17.44910 -17.17610 -16.98233 -16.35336 -15.72617 -15.64404 -15.24968 -14.92009 -14.64923 -14.20643 -13.94754 -13.78684 -13.50402 -13.19645 -13.03629 -12.80089 -12.59841 -12.49151 -12.27280 -12.16423 -11.75591 -11.70638 -11.58404 -11.46786 -11.23329 -11.18128 -11.14139 -10.79360 -10.71747 -10.66680 -10.54638 -10.30604 -10.20632 -9.74947 -9.57461 -9.27203 -7.78723 -7.58374 -6.85450 -4.46178 1.87290 2.02319 2.08207 2.75428 3.05257 3.08905 3.11334 3.31981 3.51412 3.88350 4.25719 4.46162 4.53958 4.54360 4.72615 4.77590 4.85165 4.91985 5.06028 5.10188 5.27629 5.36240 5.36391 5.48218 5.51012 5.59303 5.65561 5.70997 5.77883 5.85790 5.97240 6.11384 6.22158 6.41030 6.54956 6.80026 6.90546 6.93677 7.14141 7.27720 7.60874 7.65763 7.72440 7.87883 8.06917 8.39634 8.42190 8.73974 8.76114 10.09996 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.023855 B = 0.002312 C = 0.002198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.484390 B =12109.395439 C =12733.512568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C -0.120 4.120 4 C 0.065 3.935 5 O -0.354 6.354 6 C 0.466 3.534 7 O -0.482 6.482 8 C 0.095 3.905 9 H 0.122 0.878 10 C -0.161 4.161 11 O -0.330 6.330 12 C 0.516 3.484 13 O -0.513 6.513 14 C -0.115 4.115 15 C -0.191 4.191 16 C -0.104 4.104 17 C -0.199 4.199 18 C 0.094 3.906 19 C -0.460 4.460 20 H 0.083 0.917 21 C 0.073 3.927 22 N -0.787 5.787 23 Si 0.912 3.088 24 H -0.267 1.267 25 H -0.277 1.277 26 H -0.261 1.261 27 C -0.088 4.088 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.105 0.895 41 H 0.098 0.902 42 H 0.099 0.901 43 H 0.285 0.715 44 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.129 -8.519 -6.254 19.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.157 4.157 4 C -0.008 4.008 5 O -0.271 6.271 6 C 0.307 3.693 7 O -0.367 6.367 8 C 0.038 3.962 9 H 0.139 0.861 10 C -0.219 4.219 11 O -0.248 6.248 12 C 0.363 3.637 13 O -0.402 6.402 14 C -0.116 4.116 15 C -0.210 4.210 16 C -0.122 4.122 17 C -0.219 4.219 18 C 0.092 3.908 19 C -0.488 4.488 20 H 0.101 0.899 21 C -0.146 4.146 22 N -0.412 5.412 23 Si 0.736 3.264 24 H -0.192 1.192 25 H -0.202 1.202 26 H -0.185 1.185 27 C -0.107 4.107 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.104 0.896 39 H 0.100 0.900 40 H 0.124 0.876 41 H 0.116 0.884 42 H 0.117 0.883 43 H 0.096 0.904 44 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -16.301 -8.527 -5.902 19.320 hybrid contribution 0.181 0.518 0.427 0.695 sum -16.120 -8.009 -5.475 18.814 Atomic orbital electron populations 1.21747 0.95087 1.01906 1.02125 1.21441 0.96443 0.95512 1.02650 1.21622 0.92213 0.97953 1.03950 1.23151 0.94880 0.79848 1.02944 1.86441 1.23671 1.32637 1.84370 1.23225 0.80905 0.91867 0.73275 1.90712 1.60196 1.42512 1.43276 1.21760 0.80702 0.90289 1.03414 0.86078 1.22137 1.02627 1.01415 0.95672 1.86735 1.17597 1.48440 1.72044 1.22034 0.89839 0.78406 0.73383 1.90766 1.69548 1.35634 1.44284 1.18763 0.85694 1.00021 1.07120 1.20625 0.93990 0.99492 1.06931 1.20526 0.93616 0.97992 1.00043 1.21204 0.98263 0.95547 1.06848 1.17540 0.91122 0.91589 0.90556 1.19580 1.00429 1.12300 1.16538 0.89872 1.25971 0.94357 0.99358 0.94916 1.69781 1.17077 1.36357 1.17945 0.86233 0.80417 0.81579 0.78158 1.19198 1.20198 1.18476 1.21659 0.94534 0.96962 0.97557 0.92450 0.92495 0.92516 0.91555 0.91530 0.90599 0.90622 0.91006 0.91002 0.91012 0.89595 0.90005 0.87644 0.88420 0.88258 0.90412 0.84581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 9.91 37.16 0.37 -0.41 16 2 C -0.12 -0.72 5.93 -26.73 -0.16 -0.88 16 3 C -0.12 -0.85 5.59 -26.73 -0.15 -1.00 16 4 C 0.07 0.64 5.47 37.16 0.20 0.84 16 5 O -0.35 -4.32 10.12 -39.24 -0.40 -4.72 16 6 C 0.47 7.06 7.33 36.01 0.26 7.33 16 7 O -0.48 -8.76 16.25 -25.41 -0.41 -9.17 16 8 C 0.10 1.48 3.09 -27.88 -0.09 1.40 16 9 H 0.12 1.86 7.16 -51.93 -0.37 1.48 16 10 C -0.16 -1.98 9.48 37.16 0.35 -1.63 16 11 O -0.33 -6.50 8.65 -47.18 -0.41 -6.91 16 12 C 0.52 11.54 7.87 34.63 0.27 11.81 16 13 O -0.51 -12.04 15.59 -19.25 -0.30 -12.34 16 14 C -0.11 -2.78 5.87 -105.05 -0.62 -3.40 16 15 C -0.19 -4.31 9.62 -38.90 -0.37 -4.68 16 16 C -0.10 -2.27 10.01 -39.72 -0.40 -2.66 16 17 C -0.20 -4.69 9.78 -38.81 -0.38 -5.07 16 18 C 0.09 2.46 5.57 -106.87 -0.60 1.87 16 19 C -0.46 -11.85 9.05 -37.73 -0.34 -12.19 16 20 H 0.08 2.03 7.91 -52.48 -0.42 1.62 16 21 C 0.07 1.81 5.14 -17.34 -0.09 1.72 16 22 N -0.79 -20.44 10.96 55.55 0.61 -19.83 16 23 Si 0.91 18.44 29.60 -169.99 -5.03 13.40 16 24 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 25 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 26 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 27 C -0.09 -2.31 8.24 -38.42 -0.32 -2.62 16 28 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.06 0.29 8.14 -51.92 -0.42 -0.14 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.39 8.14 -51.92 -0.42 -0.04 16 33 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.08 0.51 8.14 -51.92 -0.42 0.08 16 35 H 0.07 0.69 8.13 -51.93 -0.42 0.26 16 36 H 0.07 0.72 8.13 -51.93 -0.42 0.30 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.09 0.83 8.11 -51.93 -0.42 0.41 16 39 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.11 2.22 7.59 -52.49 -0.40 1.82 16 41 H 0.10 1.82 8.06 -52.49 -0.42 1.40 16 42 H 0.10 2.15 8.06 -52.48 -0.42 1.73 16 43 H 0.28 6.77 8.30 -40.82 -0.34 6.43 16 44 H 0.14 3.79 5.74 -52.49 -0.30 3.49 16 LS Contribution 380.92 15.07 5.74 5.74 Total: -1.00 -29.77 380.92 -8.78 -38.55 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -6.54 Total: 4.86 kcal Atomic # 6 Polarization: -7.53 SS G_CDS: -2.04 Total: -9.58 kcal Atomic # 7 Polarization: -20.44 SS G_CDS: 0.61 Total: -19.83 kcal Atomic # 8 Polarization: -31.63 SS G_CDS: -1.52 Total: -33.14 kcal Atomic # 14 Polarization: 18.44 SS G_CDS: -5.03 Total: 13.40 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -29.77 -8.78 -38.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744788374.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.622 kcal (2) G-P(sol) polarization free energy of solvation -29.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds