Wall clock time and date at job start Tue Mar 31 2020 12:57:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47095 * 2 1 4 4 C 1.53004 * 109.47304 * 179.97438 * 3 2 1 5 5 O 1.45199 * 109.47274 * 179.97438 * 4 3 2 6 6 C 1.34224 * 116.99849 * 179.97438 * 5 4 3 7 7 O 1.20827 * 120.00514 * 0.02562 * 6 5 4 8 8 C 1.50703 * 120.00112 * 179.97438 * 6 5 4 9 9 H 1.09001 * 109.46548 * 60.00359 * 8 6 5 10 10 C 1.53005 * 109.47171 * 300.00653 * 8 6 5 11 11 O 1.45193 * 109.47553 * 180.02562 * 8 6 5 12 12 C 1.34700 * 117.00384 * 210.00267 * 11 8 6 13 13 O 1.21474 * 120.00106 * 359.97438 * 12 11 8 14 14 C 1.47766 * 120.00394 * 179.97438 * 12 11 8 15 15 C 1.39966 * 120.02814 * 0.24738 * 14 12 11 16 16 C 1.38327 * 120.35269 * 180.27839 * 15 14 12 17 17 C 1.37759 * 120.41275 * 359.45101 * 16 15 14 18 18 C 1.40751 * 120.05696 * 0.29580 * 17 16 15 19 19 C 1.41433 * 120.17933 * 179.97438 * 18 17 16 20 20 H 1.08003 * 119.99891 * 24.46790 * 19 18 17 21 21 C 1.39935 * 120.00320 * 204.46981 * 19 18 17 22 22 N 1.30826 * 119.99717 * 17.89632 * 21 19 18 23 23 Si 1.86800 * 120.00295 * 197.89401 * 21 19 18 24 24 H 1.48502 * 109.47026 * 94.69105 * 23 21 19 25 25 H 1.48495 * 109.47256 * 214.69458 * 23 21 19 26 26 H 1.48501 * 109.47008 * 334.69114 * 23 21 19 27 27 C 1.39051 * 120.03287 * 180.02562 * 14 12 11 28 28 H 1.09000 * 109.47221 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.47551 * 300.00161 * 1 2 3 30 30 H 1.08999 * 109.47398 * 60.00480 * 1 2 3 31 31 H 1.08995 * 109.47093 * 239.99400 * 2 1 3 32 32 H 1.09008 * 109.46854 * 119.99764 * 2 1 3 33 33 H 1.08995 * 109.47640 * 59.99735 * 3 2 1 34 34 H 1.09008 * 109.47077 * 299.99627 * 3 2 1 35 35 H 1.09000 * 109.46779 * 59.99806 * 4 3 2 36 36 H 1.08998 * 109.46898 * 299.99914 * 4 3 2 37 37 H 1.08997 * 109.46717 * 299.99950 * 10 8 6 38 38 H 1.09003 * 109.47231 * 59.99658 * 10 8 6 39 39 H 1.09002 * 109.46920 * 179.97438 * 10 8 6 40 40 H 1.07995 * 119.82993 * 0.02562 * 15 14 12 41 41 H 1.07994 * 119.79179 * 179.72304 * 16 15 14 42 42 H 1.08003 * 119.97162 * 180.27341 * 17 16 15 43 43 H 0.97005 * 120.00153 * 179.97438 * 22 21 19 44 44 H 1.07997 * 120.20561 * 0.02562 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 8 4.0540 2.8115 0.0000 6 6 5.3846 2.9873 0.0010 7 8 6.1207 2.0292 0.0019 8 6 5.9607 4.3799 -0.0001 9 1 5.6240 4.9130 0.8890 10 6 5.4902 5.1255 -1.2506 11 8 7.4106 4.3040 0.0007 12 6 8.0755 5.3105 0.6001 13 8 7.4608 6.2270 1.1079 14 6 9.5525 5.3000 0.6400 15 6 10.2617 4.2470 0.0506 16 6 11.6443 4.2274 0.0890 17 6 12.3395 5.2492 0.6976 18 6 11.6441 6.3193 1.2912 19 6 12.3552 7.3694 1.9172 20 1 13.3728 7.5822 1.6243 21 6 11.7406 8.1326 2.9162 22 7 10.6698 7.6821 3.5178 23 14 12.4489 9.7947 3.3907 24 1 11.7533 10.8644 2.6309 25 1 12.2577 10.0169 4.8464 26 1 13.8990 9.8240 3.0718 27 6 10.2394 6.3384 1.2591 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.6766 1.9564 0.8899 34 1 1.6766 1.9563 -0.8901 35 1 3.9336 0.9285 -0.8891 36 1 3.9329 0.9289 0.8909 37 1 5.8268 4.5923 -2.1397 38 1 4.4016 5.1825 -1.2516 39 1 5.9065 6.1329 -1.2512 40 1 9.7265 3.4434 -0.4333 41 1 12.1821 3.4082 -0.3648 42 1 13.4191 5.2289 0.7196 43 1 10.2438 8.2109 4.2105 44 1 9.6967 7.1547 1.7125 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000744788374.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:13 Heat of formation + Delta-G solvation = -185.928288 kcal Electronic energy + Delta-G solvation = -25912.362146 eV Core-core repulsion = 21986.516735 eV Total energy + Delta-G solvation = -3925.845411 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.14293 -41.28885 -39.28774 -38.17890 -37.44444 -35.99674 -35.64530 -33.50184 -32.03223 -31.38238 -30.44683 -27.35378 -26.58091 -25.36139 -24.15731 -22.89672 -22.30066 -21.97624 -21.45895 -19.83824 -18.80165 -18.59856 -18.12680 -17.79681 -17.31659 -17.06572 -16.58269 -16.34356 -16.17927 -15.35418 -15.22185 -14.87734 -14.75863 -14.52940 -14.38531 -14.24391 -14.07704 -13.57974 -13.42656 -13.16461 -13.04075 -12.92172 -12.86148 -12.79558 -12.58973 -12.29086 -12.22970 -12.10718 -12.08364 -12.02002 -11.81375 -11.57498 -11.49862 -11.45978 -11.34215 -11.10938 -9.65807 -9.47441 -8.69820 -6.40870 0.05273 0.77269 0.85837 0.94222 1.38808 1.45426 1.53530 1.72812 1.94655 2.19418 2.69825 3.27803 3.58464 3.61448 3.68578 3.81224 3.85228 3.86915 4.13894 4.29202 4.32398 4.38179 4.51902 4.54911 4.58730 4.60136 4.81771 4.83319 4.87415 4.91574 5.00061 5.02811 5.09102 5.10425 5.12576 5.26428 5.28690 5.29587 5.41525 5.43421 5.77689 5.86716 5.98825 6.19851 6.44156 6.50866 6.67507 6.84379 6.86218 8.27933 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.023855 B = 0.002312 C = 0.002198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.484390 B =12109.395439 C =12733.512568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C -0.112 4.112 4 C 0.058 3.942 5 O -0.343 6.343 6 C 0.477 3.523 7 O -0.517 6.517 8 C 0.084 3.916 9 H 0.123 0.877 10 C -0.154 4.154 11 O -0.334 6.334 12 C 0.522 3.478 13 O -0.532 6.532 14 C -0.128 4.128 15 C -0.184 4.184 16 C -0.099 4.099 17 C -0.202 4.202 18 C 0.066 3.934 19 C -0.491 4.491 20 H 0.089 0.911 21 C 0.030 3.970 22 N -0.825 5.825 23 Si 0.985 3.015 24 H -0.265 1.265 25 H -0.270 1.270 26 H -0.251 1.251 27 C -0.118 4.118 28 H 0.062 0.938 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.068 0.932 37 H 0.079 0.921 38 H 0.117 0.883 39 H 0.072 0.928 40 H 0.124 0.876 41 H 0.139 0.861 42 H 0.117 0.883 43 H 0.289 0.711 44 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.789 -9.196 -7.230 20.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C -0.150 4.150 4 C -0.015 4.015 5 O -0.260 6.260 6 C 0.319 3.681 7 O -0.405 6.405 8 C 0.028 3.972 9 H 0.140 0.860 10 C -0.211 4.211 11 O -0.251 6.251 12 C 0.370 3.630 13 O -0.423 6.423 14 C -0.129 4.129 15 C -0.204 4.204 16 C -0.116 4.116 17 C -0.221 4.221 18 C 0.063 3.937 19 C -0.520 4.520 20 H 0.107 0.893 21 C -0.185 4.185 22 N -0.451 5.451 23 Si 0.806 3.194 24 H -0.190 1.190 25 H -0.195 1.195 26 H -0.174 1.174 27 C -0.138 4.138 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.096 0.904 34 H 0.102 0.898 35 H 0.094 0.906 36 H 0.086 0.914 37 H 0.098 0.902 38 H 0.136 0.864 39 H 0.091 0.909 40 H 0.142 0.858 41 H 0.157 0.843 42 H 0.135 0.865 43 H 0.100 0.900 44 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -16.987 -9.228 -6.898 20.526 hybrid contribution 0.258 0.544 0.654 0.889 sum -16.729 -8.684 -6.244 19.856 Atomic orbital electron populations 1.21745 0.94334 1.02394 1.02337 1.21449 0.97025 0.94583 1.02872 1.21630 0.89937 0.98981 1.04428 1.23482 0.96600 0.78430 1.03010 1.86441 1.21705 1.34318 1.83548 1.23053 0.81634 0.91030 0.72374 1.90700 1.61182 1.43381 1.45200 1.22179 0.78344 0.91391 1.05269 0.85994 1.22163 1.04534 1.00335 0.94102 1.86660 1.20201 1.47161 1.71124 1.21703 0.89468 0.78627 0.73245 1.90744 1.69906 1.36506 1.45120 1.19008 0.87104 0.99983 1.06812 1.20928 0.94599 0.99043 1.05812 1.20943 0.93460 0.98371 0.98863 1.21504 0.99305 0.95198 1.06112 1.17914 0.91434 0.92834 0.91475 1.19874 1.01019 1.13548 1.17544 0.89320 1.26876 0.94468 1.02758 0.94399 1.69866 1.18573 1.37922 1.18699 0.85134 0.79950 0.76387 0.77945 1.18989 1.19468 1.17394 1.21478 0.94945 0.97588 0.99809 0.91869 0.92457 0.92156 0.91168 0.91572 0.90436 0.89834 0.90642 0.91378 0.90231 0.86408 0.90854 0.85769 0.84327 0.86487 0.90040 0.87142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.91 71.98 0.71 -0.55 16 2 C -0.12 -1.21 5.93 30.59 0.18 -1.03 16 3 C -0.11 -1.38 5.59 30.59 0.17 -1.21 16 4 C 0.06 1.05 5.47 71.98 0.39 1.45 16 5 O -0.34 -7.86 10.12 -51.36 -0.52 -8.38 16 6 C 0.48 13.99 7.33 71.24 0.52 14.51 16 7 O -0.52 -18.50 16.25 28.33 0.46 -18.04 16 8 C 0.08 2.57 3.09 29.85 0.09 2.66 16 9 H 0.12 3.72 7.16 -2.39 -0.02 3.70 16 10 C -0.15 -3.56 9.48 71.98 0.68 -2.87 16 11 O -0.33 -13.08 8.65 -49.70 -0.43 -13.51 16 12 C 0.52 23.76 7.87 70.34 0.55 24.31 16 13 O -0.53 -25.72 15.59 19.92 0.31 -25.41 16 14 C -0.13 -6.30 5.87 -20.14 -0.12 -6.42 16 15 C -0.18 -8.13 9.62 22.71 0.22 -7.91 16 16 C -0.10 -4.12 10.01 22.18 0.22 -3.89 16 17 C -0.20 -9.39 9.78 22.77 0.22 -9.17 16 18 C 0.07 3.51 5.57 -21.32 -0.12 3.39 16 19 C -0.49 -25.90 9.05 23.47 0.21 -25.69 16 20 H 0.09 4.39 7.91 -2.91 -0.02 4.37 16 21 C 0.03 1.53 5.14 85.25 0.44 1.97 16 22 N -0.83 -44.48 10.96 21.82 0.24 -44.24 16 23 Si 0.99 38.23 29.60 68.60 2.03 40.26 16 24 H -0.27 -10.10 7.11 99.48 0.71 -9.40 16 25 H -0.27 -10.06 7.11 99.48 0.71 -9.35 16 26 H -0.25 -9.21 7.11 99.48 0.71 -8.50 16 27 C -0.12 -6.47 8.24 23.02 0.19 -6.28 16 28 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.06 0.48 8.14 -2.38 -0.02 0.46 16 30 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.07 0.65 8.14 -2.39 -0.02 0.64 16 32 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 33 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 35 H 0.08 1.34 8.13 -2.39 -0.02 1.32 16 36 H 0.07 1.30 8.13 -2.39 -0.02 1.29 16 37 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.12 1.96 8.11 -2.39 -0.02 1.94 16 39 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.12 4.98 7.59 -2.91 -0.02 4.96 16 41 H 0.14 4.63 8.06 -2.91 -0.02 4.61 16 42 H 0.12 4.92 8.06 -2.91 -0.02 4.90 16 43 H 0.29 14.25 8.30 -92.70 -0.77 13.48 16 44 H 0.11 6.53 5.74 -2.91 -0.02 6.51 16 Total: -1.00 -65.92 380.92 7.66 -58.25 By element: Atomic # 1 Polarization: 26.82 SS G_CDS: 0.99 Total: 27.81 kcal Atomic # 6 Polarization: -21.32 SS G_CDS: 4.58 Total: -16.74 kcal Atomic # 7 Polarization: -44.48 SS G_CDS: 0.24 Total: -44.24 kcal Atomic # 8 Polarization: -65.16 SS G_CDS: -0.18 Total: -65.34 kcal Atomic # 14 Polarization: 38.23 SS G_CDS: 2.03 Total: 40.26 kcal Total: -65.92 7.66 -58.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744788374.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.673 kcal (2) G-P(sol) polarization free energy of solvation -65.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds