Wall clock time and date at job start Tue Mar 31 2020 12:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.63001 * 2 1 4 4 O 1.43755 * 109.63217 * 239.75870 * 2 1 3 5 5 C 1.44993 * 104.92741 * 264.30290 * 4 2 1 6 6 C 1.54913 * 101.62759 * 324.12706 * 5 4 2 7 7 H 1.09003 * 110.69618 * 276.85556 * 6 5 4 8 8 C 1.52998 * 110.69972 * 153.81899 * 6 5 4 9 9 C 1.52997 * 109.47336 * 177.37714 * 8 6 5 10 10 O 1.45205 * 109.46791 * 180.02562 * 9 8 6 11 11 C 1.34708 * 116.99499 * 179.97438 * 10 9 8 12 12 O 1.21466 * 120.00116 * 359.97438 * 11 10 9 13 13 C 1.47767 * 119.99704 * 179.97438 * 11 10 9 14 14 C 1.39968 * 120.03335 * 0.02562 * 13 11 10 15 15 C 1.38310 * 120.35558 * 179.97438 * 14 13 11 16 16 C 1.37763 * 120.42043 * 0.02562 * 15 14 13 17 17 C 1.40757 * 120.04412 * 359.71978 * 16 15 14 18 18 C 1.41443 * 120.17227 * 180.28282 * 17 16 15 19 19 H 1.07998 * 119.99944 * 24.73018 * 18 17 16 20 20 C 1.39931 * 119.99734 * 204.73615 * 18 17 16 21 21 N 1.30827 * 120.00374 * 17.88952 * 20 18 17 22 22 Si 1.86803 * 119.99635 * 197.88928 * 20 18 17 23 23 H 1.48501 * 109.47422 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.46991 * 119.99997 * 22 20 18 25 25 H 1.48506 * 109.47125 * 239.99531 * 22 20 18 26 26 C 1.39052 * 120.03127 * 180.02562 * 13 11 10 27 27 O 1.43364 * 109.63380 * 120.39403 * 2 1 3 28 28 H 1.09008 * 109.47118 * 299.60666 * 1 2 3 29 29 H 1.08999 * 109.47551 * 59.60641 * 1 2 3 30 30 H 1.08998 * 109.47478 * 179.61024 * 1 2 3 31 31 H 1.09000 * 109.47638 * 180.39343 * 3 2 1 32 32 H 1.08999 * 109.47262 * 300.39399 * 3 2 1 33 33 H 1.08999 * 109.47461 * 60.39085 * 3 2 1 34 34 H 1.09001 * 111.14443 * 205.99455 * 5 4 2 35 35 H 1.09008 * 110.90166 * 82.14559 * 5 4 2 36 36 H 1.09005 * 109.46679 * 57.37300 * 8 6 5 37 37 H 1.09003 * 109.47289 * 297.38022 * 8 6 5 38 38 H 1.08991 * 109.47426 * 60.00196 * 9 8 6 39 39 H 1.09005 * 109.46733 * 299.99759 * 9 8 6 40 40 H 1.08003 * 119.82240 * 359.95062 * 14 13 11 41 41 H 1.08005 * 119.79374 * 179.97438 * 15 14 13 42 42 H 1.07994 * 119.97279 * 180.02562 * 16 15 14 43 43 H 0.96997 * 119.99697 * 180.02562 * 21 20 18 44 44 H 1.07996 * 120.20384 * 0.02562 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0439 1.4410 0.0000 4 8 2.0129 -0.6819 -1.1697 5 6 2.2694 -2.0399 -0.7311 6 6 2.7884 -1.8098 0.7102 7 1 3.8511 -1.5671 0.7028 8 6 2.5222 -3.0376 1.5834 9 6 3.1030 -2.8060 2.9798 10 8 2.8508 -3.9716 3.8081 11 6 3.3020 -3.9294 5.0767 12 8 3.8904 -2.9461 5.4797 13 6 3.0812 -5.0793 5.9780 14 6 2.4038 -6.2130 5.5142 15 6 2.1939 -7.2933 6.3520 16 6 2.6483 -7.2663 7.6522 17 6 3.3363 -6.1373 8.1351 18 6 3.8092 -6.1091 9.4678 19 1 4.0136 -7.0333 9.9879 20 6 4.0122 -4.8838 10.1124 21 7 3.4532 -3.7977 9.6439 22 14 5.0813 -4.7989 11.6418 23 1 5.5923 -6.1554 11.9646 24 1 6.2250 -3.8842 11.3961 25 1 4.2761 -4.2897 12.7810 26 6 3.5462 -5.0363 7.2878 27 8 2.0117 -0.6832 1.1647 28 1 -0.3634 0.5077 0.8936 29 1 -0.3634 0.5199 -0.8864 30 1 -0.3634 -1.0276 -0.0070 31 1 3.1339 1.4381 -0.0071 32 1 1.6763 1.9579 -0.8864 33 1 1.6878 1.9539 0.8934 34 1 3.0312 -2.5154 -1.3490 35 1 1.3509 -2.6270 -0.7260 36 1 2.9935 -3.9119 1.1342 37 1 1.4476 -3.2032 1.6596 38 1 2.6318 -1.9319 3.4289 39 1 4.1777 -2.6406 2.9034 40 1 2.0427 -6.2441 4.4968 41 1 1.6697 -8.1633 5.9848 42 1 2.4808 -8.1141 8.3000 43 1 3.5943 -2.9483 10.0906 44 1 4.0690 -4.1636 7.6503 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000750546981.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:48 Heat of formation + Delta-G solvation = -170.640995 kcal Electronic energy + Delta-G solvation = -26169.410819 eV Core-core repulsion = 22244.228315 eV Total energy + Delta-G solvation = -3925.182504 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.93863 -39.71962 -37.43004 -36.07364 -35.34085 -34.12514 -33.75331 -31.64178 -30.30167 -29.52017 -28.11764 -27.65035 -25.42127 -24.25892 -22.62884 -21.69512 -21.32286 -20.99318 -19.77862 -17.88427 -17.83736 -16.70185 -16.44203 -16.00474 -15.96791 -15.53248 -15.05592 -14.78299 -14.63460 -14.41340 -13.86937 -13.61014 -13.39291 -13.26049 -13.07495 -12.86294 -12.63329 -12.52710 -12.47097 -12.42345 -12.05606 -11.78116 -11.62572 -11.55079 -11.36196 -11.20155 -11.11513 -10.77260 -10.52693 -10.46552 -10.19583 -10.16016 -9.94909 -9.73984 -9.47804 -9.25747 -7.75832 -7.57367 -6.84338 -4.45263 1.97571 2.75875 3.01680 3.06025 3.10353 3.12201 3.13348 3.59766 3.61175 3.89218 4.18463 4.46612 4.49034 4.56465 4.64275 4.73198 4.88509 4.94736 5.07294 5.25641 5.29072 5.32760 5.40329 5.43160 5.44141 5.52743 5.57613 5.70149 5.77620 5.86041 5.91778 5.94282 6.12250 6.38476 6.62840 6.82359 6.91824 6.94057 6.99163 7.15590 7.29618 7.66700 7.73920 7.89511 8.08832 8.42895 8.55855 8.75501 8.77497 10.10974 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.021277 B = 0.002381 C = 0.002218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.653153 B =11756.802895 C =12620.576212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.249 3.751 3 C -0.154 4.154 4 O -0.375 6.375 5 C 0.023 3.977 6 C 0.055 3.945 7 H 0.090 0.910 8 C -0.116 4.116 9 C 0.069 3.931 10 O -0.358 6.358 11 C 0.512 3.488 12 O -0.517 6.517 13 C -0.115 4.115 14 C -0.194 4.194 15 C -0.104 4.104 16 C -0.202 4.202 17 C 0.095 3.905 18 C -0.459 4.459 19 H 0.083 0.917 20 C 0.073 3.927 21 N -0.786 5.786 22 Si 0.910 3.090 23 H -0.259 1.259 24 H -0.271 1.271 25 H -0.274 1.274 26 C -0.090 4.090 27 O -0.371 6.371 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.111 0.889 35 H 0.079 0.921 36 H 0.092 0.908 37 H 0.085 0.915 38 H 0.073 0.927 39 H 0.065 0.935 40 H 0.103 0.897 41 H 0.097 0.903 42 H 0.098 0.902 43 H 0.284 0.716 44 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.884 5.537 -17.799 18.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.172 3.828 3 C -0.212 4.212 4 O -0.295 6.295 5 C -0.053 4.053 6 C -0.003 4.003 7 H 0.108 0.892 8 C -0.154 4.154 9 C -0.005 4.005 10 O -0.275 6.275 11 C 0.359 3.641 12 O -0.406 6.406 13 C -0.116 4.116 14 C -0.214 4.214 15 C -0.122 4.122 16 C -0.222 4.222 17 C 0.092 3.908 18 C -0.488 4.488 19 H 0.101 0.899 20 C -0.146 4.146 21 N -0.410 5.410 22 Si 0.734 3.266 23 H -0.183 1.183 24 H -0.196 1.196 25 H -0.199 1.199 26 C -0.109 4.109 27 O -0.292 6.292 28 H 0.095 0.905 29 H 0.093 0.907 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.129 0.871 35 H 0.097 0.903 36 H 0.110 0.890 37 H 0.104 0.896 38 H 0.092 0.908 39 H 0.084 0.916 40 H 0.121 0.879 41 H 0.115 0.885 42 H 0.117 0.883 43 H 0.096 0.904 44 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -2.762 6.278 -17.647 18.933 hybrid contribution 0.409 0.201 0.656 0.799 sum -2.353 6.479 -16.992 18.337 Atomic orbital electron populations 1.22373 0.93753 1.03410 1.03331 1.23401 0.93044 0.91492 0.74856 1.22073 1.02508 0.93373 1.03218 1.89271 1.86027 1.21993 1.32247 1.24423 1.01758 0.84937 0.94180 1.23707 0.96858 0.86608 0.93114 0.89176 1.21642 1.03620 0.96382 0.93715 1.22787 1.00671 0.87646 0.89421 1.86554 1.74156 1.42554 1.24279 1.21863 0.74804 0.87627 0.79804 1.90766 1.39898 1.34202 1.75777 1.18837 1.06933 0.92335 0.93484 1.20553 1.07282 0.94411 0.99146 1.20512 1.00420 0.96988 0.94307 1.21185 1.04802 1.00418 0.95752 1.17554 0.89506 0.90553 0.93153 1.19598 1.38714 0.93402 0.97113 0.89887 1.25973 0.94151 0.95151 0.99352 1.69787 1.32631 1.00480 1.38146 0.86223 0.80185 0.79639 0.80506 1.18296 1.19559 1.19891 1.21663 0.99238 1.00517 0.89475 1.88976 1.69412 1.41573 1.29249 0.90542 0.90717 0.91756 0.91423 0.90778 0.90326 0.87064 0.90258 0.88955 0.89635 0.90824 0.91617 0.87899 0.88534 0.88336 0.90443 0.84676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.48 9.20 37.16 0.34 -1.14 16 2 C 0.25 2.52 1.47 -26.74 -0.04 2.48 16 3 C -0.15 -1.34 9.24 37.16 0.34 -1.00 16 4 O -0.37 -3.86 11.00 -59.04 -0.65 -4.51 16 5 C 0.02 0.19 7.39 38.17 0.28 0.47 16 6 C 0.05 0.54 3.65 -25.72 -0.09 0.45 16 7 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 8 C -0.12 -1.25 5.36 -26.73 -0.14 -1.39 16 9 C 0.07 1.04 5.41 37.16 0.20 1.24 16 10 O -0.36 -6.74 9.46 -40.51 -0.38 -7.13 16 11 C 0.51 11.67 7.90 34.63 0.27 11.94 16 12 O -0.52 -12.88 16.12 -19.24 -0.31 -13.19 16 13 C -0.11 -2.78 5.87 -105.05 -0.62 -3.39 16 14 C -0.19 -4.27 9.62 -38.91 -0.37 -4.64 16 15 C -0.10 -2.23 10.01 -39.73 -0.40 -2.63 16 16 C -0.20 -4.75 9.78 -38.80 -0.38 -5.13 16 17 C 0.09 2.49 5.57 -106.87 -0.60 1.89 16 18 C -0.46 -11.92 9.05 -37.73 -0.34 -12.26 16 19 H 0.08 2.04 7.91 -52.49 -0.42 1.63 16 20 C 0.07 1.82 5.14 -17.35 -0.09 1.73 16 21 N -0.79 -20.65 10.96 55.55 0.61 -20.04 16 22 Si 0.91 18.58 29.59 -169.99 -5.03 13.55 16 23 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 24 H -0.27 -5.50 7.11 56.52 0.40 -5.09 16 25 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 26 C -0.09 -2.38 8.24 -38.43 -0.32 -2.70 16 27 O -0.37 -4.45 10.34 -59.04 -0.61 -5.06 16 28 H 0.08 0.64 8.14 -51.92 -0.42 0.22 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.11 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.08 0.58 8.04 -51.92 -0.42 0.16 16 36 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.07 1.21 7.99 -51.93 -0.41 0.79 16 39 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.10 2.01 7.59 -52.48 -0.40 1.61 16 41 H 0.10 1.75 8.06 -52.48 -0.42 1.32 16 42 H 0.10 2.13 8.06 -52.49 -0.42 1.71 16 43 H 0.28 6.84 8.30 -40.82 -0.34 6.50 16 44 H 0.14 3.85 5.74 -52.49 -0.30 3.55 16 LS Contribution 372.92 15.07 5.62 5.62 Total: -1.00 -30.14 372.92 -9.28 -39.42 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -6.58 Total: 5.40 kcal Atomic # 6 Polarization: -12.12 SS G_CDS: -1.95 Total: -14.07 kcal Atomic # 7 Polarization: -20.65 SS G_CDS: 0.61 Total: -20.04 kcal Atomic # 8 Polarization: -27.94 SS G_CDS: -1.95 Total: -29.89 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -5.03 Total: 13.55 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.14 -9.28 -39.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750546981.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.218 kcal (2) G-P(sol) polarization free energy of solvation -30.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds