Wall clock time and date at job start Tue Mar 31 2020 12:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.63001 * 2 1 4 4 O 1.43755 * 109.63217 * 239.75870 * 2 1 3 5 5 C 1.44993 * 104.92741 * 264.30290 * 4 2 1 6 6 C 1.54913 * 101.62759 * 324.12706 * 5 4 2 7 7 H 1.09003 * 110.69618 * 276.85556 * 6 5 4 8 8 C 1.52998 * 110.69972 * 153.81899 * 6 5 4 9 9 C 1.52997 * 109.47336 * 177.37714 * 8 6 5 10 10 O 1.45205 * 109.46791 * 180.02562 * 9 8 6 11 11 C 1.34708 * 116.99499 * 179.97438 * 10 9 8 12 12 O 1.21466 * 120.00116 * 359.97438 * 11 10 9 13 13 C 1.47767 * 119.99704 * 179.97438 * 11 10 9 14 14 C 1.39968 * 120.03335 * 0.02562 * 13 11 10 15 15 C 1.38310 * 120.35558 * 179.97438 * 14 13 11 16 16 C 1.37763 * 120.42043 * 0.02562 * 15 14 13 17 17 C 1.40757 * 120.04412 * 359.71978 * 16 15 14 18 18 C 1.41443 * 120.17227 * 180.28282 * 17 16 15 19 19 H 1.07998 * 119.99944 * 24.73018 * 18 17 16 20 20 C 1.39931 * 119.99734 * 204.73615 * 18 17 16 21 21 N 1.30827 * 120.00374 * 17.88952 * 20 18 17 22 22 Si 1.86803 * 119.99635 * 197.88928 * 20 18 17 23 23 H 1.48501 * 109.47422 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.46991 * 119.99997 * 22 20 18 25 25 H 1.48506 * 109.47125 * 239.99531 * 22 20 18 26 26 C 1.39052 * 120.03127 * 180.02562 * 13 11 10 27 27 O 1.43364 * 109.63380 * 120.39403 * 2 1 3 28 28 H 1.09008 * 109.47118 * 299.60666 * 1 2 3 29 29 H 1.08999 * 109.47551 * 59.60641 * 1 2 3 30 30 H 1.08998 * 109.47478 * 179.61024 * 1 2 3 31 31 H 1.09000 * 109.47638 * 180.39343 * 3 2 1 32 32 H 1.08999 * 109.47262 * 300.39399 * 3 2 1 33 33 H 1.08999 * 109.47461 * 60.39085 * 3 2 1 34 34 H 1.09001 * 111.14443 * 205.99455 * 5 4 2 35 35 H 1.09008 * 110.90166 * 82.14559 * 5 4 2 36 36 H 1.09005 * 109.46679 * 57.37300 * 8 6 5 37 37 H 1.09003 * 109.47289 * 297.38022 * 8 6 5 38 38 H 1.08991 * 109.47426 * 60.00196 * 9 8 6 39 39 H 1.09005 * 109.46733 * 299.99759 * 9 8 6 40 40 H 1.08003 * 119.82240 * 359.95062 * 14 13 11 41 41 H 1.08005 * 119.79374 * 179.97438 * 15 14 13 42 42 H 1.07994 * 119.97279 * 180.02562 * 16 15 14 43 43 H 0.96997 * 119.99697 * 180.02562 * 21 20 18 44 44 H 1.07996 * 120.20384 * 0.02562 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0439 1.4410 0.0000 4 8 2.0129 -0.6819 -1.1697 5 6 2.2694 -2.0399 -0.7311 6 6 2.7884 -1.8098 0.7102 7 1 3.8511 -1.5671 0.7028 8 6 2.5222 -3.0376 1.5834 9 6 3.1030 -2.8060 2.9798 10 8 2.8508 -3.9716 3.8081 11 6 3.3020 -3.9294 5.0767 12 8 3.8904 -2.9461 5.4797 13 6 3.0812 -5.0793 5.9780 14 6 2.4038 -6.2130 5.5142 15 6 2.1939 -7.2933 6.3520 16 6 2.6483 -7.2663 7.6522 17 6 3.3363 -6.1373 8.1351 18 6 3.8092 -6.1091 9.4678 19 1 4.0136 -7.0333 9.9879 20 6 4.0122 -4.8838 10.1124 21 7 3.4532 -3.7977 9.6439 22 14 5.0813 -4.7989 11.6418 23 1 5.5923 -6.1554 11.9646 24 1 6.2250 -3.8842 11.3961 25 1 4.2761 -4.2897 12.7810 26 6 3.5462 -5.0363 7.2878 27 8 2.0117 -0.6832 1.1647 28 1 -0.3634 0.5077 0.8936 29 1 -0.3634 0.5199 -0.8864 30 1 -0.3634 -1.0276 -0.0070 31 1 3.1339 1.4381 -0.0071 32 1 1.6763 1.9579 -0.8864 33 1 1.6878 1.9539 0.8934 34 1 3.0312 -2.5154 -1.3490 35 1 1.3509 -2.6270 -0.7260 36 1 2.9935 -3.9119 1.1342 37 1 1.4476 -3.2032 1.6596 38 1 2.6318 -1.9319 3.4289 39 1 4.1777 -2.6406 2.9034 40 1 2.0427 -6.2441 4.4968 41 1 1.6697 -8.1633 5.9848 42 1 2.4808 -8.1141 8.3000 43 1 3.5943 -2.9483 10.0906 44 1 4.0690 -4.1636 7.6503 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000750546981.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:47 Heat of formation + Delta-G solvation = -186.426357 kcal Electronic energy + Delta-G solvation = -26170.095323 eV Core-core repulsion = 22244.228315 eV Total energy + Delta-G solvation = -3925.867009 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.73695 -41.38718 -39.22024 -37.64460 -36.25710 -35.63211 -34.95170 -32.67431 -32.00416 -31.36399 -29.00116 -28.36190 -27.28880 -25.56677 -24.01363 -22.85390 -22.56486 -22.11530 -21.51217 -19.65229 -18.66952 -18.17746 -17.77635 -17.50803 -17.29993 -16.71826 -16.46722 -16.31286 -15.63530 -15.48195 -15.24735 -15.04790 -14.71183 -14.42144 -14.35154 -14.19760 -13.85256 -13.54381 -13.48220 -13.18448 -13.13398 -13.02148 -12.84360 -12.83197 -12.72409 -12.63596 -12.56472 -12.25927 -12.20455 -12.00936 -11.57988 -11.54791 -11.28311 -11.17829 -11.10486 -10.69579 -9.62628 -9.45154 -8.69651 -6.40591 0.11789 0.95615 1.37217 1.44510 1.53570 1.61781 1.78749 2.18404 2.31800 2.71298 2.90463 3.35226 3.62077 3.67877 3.77093 3.86601 3.88635 3.95509 4.05904 4.12726 4.32800 4.42636 4.44404 4.53064 4.61374 4.63082 4.63333 4.69466 4.74577 4.81345 4.87994 4.93261 5.03712 5.04649 5.12729 5.12958 5.19780 5.27109 5.31096 5.44244 5.81362 5.88660 6.00675 6.09375 6.22429 6.52432 6.79114 6.85693 6.88368 8.27981 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.021277 B = 0.002381 C = 0.002218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.653153 B =11756.802895 C =12620.576212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.239 3.761 3 C -0.155 4.155 4 O -0.386 6.386 5 C 0.026 3.974 6 C 0.051 3.949 7 H 0.094 0.906 8 C -0.103 4.103 9 C 0.063 3.937 10 O -0.347 6.347 11 C 0.514 3.486 12 O -0.549 6.549 13 C -0.129 4.129 14 C -0.179 4.179 15 C -0.099 4.099 16 C -0.202 4.202 17 C 0.064 3.936 18 C -0.493 4.493 19 H 0.088 0.912 20 C 0.029 3.971 21 N -0.827 5.827 22 Si 0.984 3.016 23 H -0.250 1.250 24 H -0.271 1.271 25 H -0.265 1.265 26 C -0.125 4.125 27 O -0.397 6.397 28 H 0.074 0.926 29 H 0.088 0.912 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.137 0.863 35 H 0.090 0.910 36 H 0.118 0.882 37 H 0.087 0.913 38 H 0.055 0.945 39 H 0.068 0.932 40 H 0.135 0.865 41 H 0.143 0.857 42 H 0.116 0.884 43 H 0.287 0.713 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.514 4.059 -19.606 20.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.163 3.837 3 C -0.212 4.212 4 O -0.307 6.307 5 C -0.050 4.050 6 C -0.006 4.006 7 H 0.112 0.888 8 C -0.140 4.140 9 C -0.010 4.010 10 O -0.264 6.264 11 C 0.362 3.638 12 O -0.441 6.441 13 C -0.130 4.130 14 C -0.198 4.198 15 C -0.117 4.117 16 C -0.222 4.222 17 C 0.062 3.938 18 C -0.522 4.522 19 H 0.106 0.894 20 C -0.186 4.186 21 N -0.453 5.453 22 Si 0.804 3.196 23 H -0.173 1.173 24 H -0.196 1.196 25 H -0.189 1.189 26 C -0.145 4.145 27 O -0.319 6.319 28 H 0.093 0.907 29 H 0.107 0.893 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.107 0.893 33 H 0.097 0.903 34 H 0.155 0.845 35 H 0.109 0.891 36 H 0.137 0.863 37 H 0.106 0.894 38 H 0.073 0.927 39 H 0.086 0.914 40 H 0.153 0.847 41 H 0.161 0.839 42 H 0.134 0.866 43 H 0.098 0.902 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -3.412 4.778 -19.488 20.353 hybrid contribution 0.524 0.622 1.025 1.309 sum -2.889 5.400 -18.463 19.452 Atomic orbital electron populations 1.22369 0.92833 1.03541 1.03930 1.23625 0.93821 0.91823 0.74425 1.22095 1.02121 0.92996 1.03975 1.89256 1.86135 1.23032 1.32311 1.24582 1.03029 0.84324 0.93060 1.23807 0.97043 0.85738 0.94048 0.88829 1.21631 1.03603 0.97931 0.90870 1.23132 1.01216 0.85827 0.90859 1.86516 1.73196 1.44036 1.22616 1.21732 0.74326 0.86800 0.80905 1.90745 1.41386 1.35262 1.76701 1.19086 1.07047 0.93788 0.93112 1.20972 1.05062 0.93233 1.00571 1.20984 0.99349 0.98167 0.93175 1.21517 1.03725 0.99853 0.97116 1.17919 0.90605 0.91601 0.93675 1.19884 1.40476 0.94168 0.97644 0.89364 1.26878 0.94814 0.94413 1.02501 1.69881 1.34285 1.01145 1.39976 0.85130 0.78068 0.79867 0.76512 1.17272 1.19593 1.18945 1.21470 1.01542 1.00359 0.91090 1.88963 1.69849 1.42456 1.30667 0.90711 0.89342 0.91862 0.92057 0.89324 0.90269 0.84498 0.89138 0.86336 0.89433 0.92667 0.91351 0.84689 0.83929 0.86592 0.90209 0.87788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.71 9.20 71.98 0.66 -2.05 16 2 C 0.24 4.59 1.47 30.59 0.05 4.64 16 3 C -0.15 -2.57 9.24 71.98 0.66 -1.90 16 4 O -0.39 -7.23 11.00 -126.22 -1.39 -8.61 16 5 C 0.03 0.35 7.39 72.64 0.54 0.89 16 6 C 0.05 0.92 3.65 31.25 0.11 1.04 16 7 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 8 C -0.10 -2.00 5.36 30.59 0.16 -1.83 16 9 C 0.06 1.88 5.41 71.98 0.39 2.27 16 10 O -0.35 -12.74 9.46 -56.18 -0.53 -13.28 16 11 C 0.51 23.79 7.90 70.34 0.56 24.35 16 12 O -0.55 -28.52 16.12 19.95 0.32 -28.19 16 13 C -0.13 -6.30 5.87 -20.14 -0.12 -6.42 16 14 C -0.18 -7.44 9.62 22.71 0.22 -7.22 16 15 C -0.10 -3.94 10.01 22.17 0.22 -3.72 16 16 C -0.20 -9.29 9.78 22.77 0.22 -9.07 16 17 C 0.06 3.45 5.57 -21.32 -0.12 3.33 16 18 C -0.49 -26.30 9.05 23.47 0.21 -26.08 16 19 H 0.09 4.42 7.91 -2.91 -0.02 4.39 16 20 C 0.03 1.48 5.14 85.25 0.44 1.92 16 21 N -0.83 -45.62 10.96 21.82 0.24 -45.39 16 22 Si 0.98 38.99 29.59 68.60 2.03 41.02 16 23 H -0.25 -9.38 7.11 99.48 0.71 -8.67 16 24 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 25 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 26 C -0.12 -6.91 8.24 23.02 0.19 -6.72 16 27 O -0.40 -9.29 10.34 -126.22 -1.31 -10.59 16 28 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 29 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.14 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.09 1.04 8.04 -2.38 -0.02 1.02 16 36 H 0.12 1.70 8.14 -2.38 -0.02 1.68 16 37 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.05 1.85 7.99 -2.39 -0.02 1.83 16 39 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 40 H 0.14 4.72 7.59 -2.91 -0.02 4.70 16 41 H 0.14 4.39 8.06 -2.91 -0.02 4.37 16 42 H 0.12 4.81 8.06 -2.91 -0.02 4.79 16 43 H 0.29 14.55 8.30 -92.71 -0.77 13.78 16 44 H 0.10 6.34 5.74 -2.91 -0.02 6.33 16 Total: -1.00 -68.30 372.92 4.75 -63.54 By element: Atomic # 1 Polarization: 27.11 SS G_CDS: 0.99 Total: 28.10 kcal Atomic # 6 Polarization: -31.00 SS G_CDS: 4.40 Total: -26.60 kcal Atomic # 7 Polarization: -45.62 SS G_CDS: 0.24 Total: -45.39 kcal Atomic # 8 Polarization: -57.77 SS G_CDS: -2.90 Total: -60.68 kcal Atomic # 14 Polarization: 38.99 SS G_CDS: 2.03 Total: 41.02 kcal Total: -68.30 4.75 -63.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750546981.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.881 kcal (2) G-P(sol) polarization free energy of solvation -68.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds