Wall clock time and date at job start Tue Mar 31 2020 12:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47216 * 2 1 4 4 C 1.52996 * 109.47197 * 119.99832 * 2 1 3 5 5 C 1.50705 * 109.47537 * 175.00062 * 4 2 1 6 6 O 1.20761 * 119.99425 * 0.02562 * 5 4 2 7 7 C 1.50695 * 120.00013 * 180.02562 * 5 4 2 8 8 O 1.45203 * 109.46918 * 179.97438 * 7 5 4 9 9 C 1.34225 * 117.00065 * 179.97438 * 8 7 5 10 10 O 1.20830 * 120.00117 * 0.02562 * 9 8 7 11 11 C 1.50705 * 120.00089 * 180.02562 * 9 8 7 12 12 C 1.50695 * 109.46992 * 180.02562 * 11 9 8 13 13 C 1.38299 * 119.93247 * 90.00201 * 12 11 9 14 14 C 1.38101 * 120.07425 * 179.97438 * 13 12 11 15 15 C 1.38886 * 119.92536 * 0.02562 * 14 13 12 16 16 O 1.35750 * 120.06440 * 180.02562 * 15 14 13 17 17 C 1.34828 * 117.00075 * 5.53777 * 16 15 14 18 18 H 1.07993 * 120.00518 * 354.94289 * 17 16 15 19 19 C 1.38663 * 119.99751 * 174.94575 * 17 16 15 20 20 N 1.31556 * 120.00220 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 119.99821 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47448 * 89.99502 * 21 19 17 23 23 H 1.48501 * 109.47175 * 209.99712 * 21 19 17 24 24 H 1.48506 * 109.47415 * 329.99678 * 21 19 17 25 25 C 1.38874 * 119.86623 * 0.27854 * 15 14 13 26 26 C 1.38106 * 119.92542 * 359.44577 * 25 15 14 27 27 H 1.09002 * 109.47129 * 300.00215 * 1 2 3 28 28 H 1.08998 * 109.46722 * 59.99699 * 1 2 3 29 29 H 1.08992 * 109.47132 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47408 * 239.99815 * 2 1 3 31 31 H 1.09007 * 109.47297 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47521 * 299.99812 * 3 2 1 33 33 H 1.09002 * 109.47247 * 59.99857 * 3 2 1 34 34 H 1.08999 * 109.46843 * 54.99975 * 4 2 1 35 35 H 1.09001 * 109.47541 * 295.00508 * 4 2 1 36 36 H 1.09005 * 109.47236 * 60.00331 * 7 5 4 37 37 H 1.08992 * 109.47428 * 299.99735 * 7 5 4 38 38 H 1.08998 * 109.46621 * 60.00590 * 11 9 8 39 39 H 1.08996 * 109.47266 * 300.00254 * 11 9 8 40 40 H 1.07999 * 119.96503 * 0.02562 * 13 12 11 41 41 H 1.07992 * 120.03608 * 180.02562 * 14 13 12 42 42 H 0.96996 * 120.00178 * 179.97438 * 20 19 17 43 43 H 1.07996 * 120.03745 * 179.72497 * 25 15 14 44 44 H 1.07997 * 119.96326 * 180.27708 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5420 -0.8294 1.1890 6 8 4.1425 -0.3759 0.2445 7 6 4.2943 -1.5033 2.3073 8 8 5.7167 -1.4803 2.0163 9 6 6.5329 -2.0442 2.9205 10 8 6.0739 -2.5411 3.9218 11 6 8.0217 -2.0576 2.6870 12 6 8.7050 -2.7446 3.8411 13 6 8.9194 -4.1103 3.8023 14 6 9.5458 -4.7427 4.8582 15 6 9.9601 -4.0058 5.9601 16 8 10.5766 -4.6245 6.9993 17 6 10.8596 -5.9344 6.8511 18 1 10.5244 -6.4631 5.9712 19 6 11.5812 -6.6026 7.8287 20 7 11.9899 -5.9584 8.9004 21 14 11.9739 -8.4172 7.6231 22 1 13.2709 -8.5659 6.9151 23 1 12.0630 -9.0589 8.9593 24 1 10.9002 -9.0695 6.8312 25 6 9.7377 -2.6355 5.9989 26 6 9.1158 -2.0081 4.9373 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 3.1301 1.4425 0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6054 -1.7197 1.2951 35 1 1.7516 -0.1583 2.1370 36 1 3.9595 -2.5366 2.3995 37 1 4.1057 -0.9754 3.2420 38 1 8.3859 -1.0335 2.6061 39 1 8.2398 -2.5949 1.7641 40 1 8.5975 -4.6827 2.9450 41 1 9.7134 -5.8091 4.8270 42 1 12.4943 -6.4260 9.5844 43 1 10.0546 -2.0605 6.8564 44 1 8.9465 -0.9418 4.9649 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000751663578.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:57 Heat of formation + Delta-G solvation = -138.803956 kcal Electronic energy + Delta-G solvation = -25288.823971 eV Core-core repulsion = 21365.022025 eV Total energy + Delta-G solvation = -3923.801946 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.76176 -39.84214 -38.95472 -36.93744 -36.20074 -35.87062 -32.54804 -31.64599 -30.61044 -30.18837 -27.82775 -27.50919 -26.50265 -25.14614 -22.02851 -21.91231 -21.03055 -20.22941 -19.84404 -18.01576 -17.71117 -17.10969 -16.93777 -16.72671 -16.18894 -15.65912 -14.96775 -14.84100 -14.58562 -14.47003 -14.33014 -13.95935 -13.59951 -13.56573 -13.35486 -12.90011 -12.74282 -12.65972 -12.62509 -12.47713 -12.34016 -11.91052 -11.62482 -11.56047 -11.30660 -11.30035 -11.14344 -10.92019 -10.89034 -10.82098 -10.65187 -10.44961 -10.42750 -9.86243 -9.35550 -8.84634 -8.18991 -7.22059 -6.46699 -4.05261 1.51728 2.02977 2.21981 2.30096 2.59977 3.12432 3.13086 3.17876 3.64341 3.95589 4.23865 4.41641 4.52107 4.57498 4.75869 4.78561 4.92396 4.95422 5.05227 5.08933 5.13272 5.17332 5.21039 5.25250 5.26896 5.31149 5.46615 5.54685 5.63035 5.70020 5.71943 5.81460 5.89579 5.96921 6.18603 6.30150 6.38679 6.67279 6.88045 7.02661 7.09241 7.20262 7.32346 7.42044 7.79008 7.83178 7.98361 8.98791 9.68395 10.71151 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.033154 B = 0.001853 C = 0.001817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.329864 B =15108.058732 C =15404.619827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.088 4.088 3 C -0.156 4.156 4 C -0.162 4.162 5 C 0.354 3.646 6 O -0.424 6.424 7 C 0.012 3.988 8 O -0.347 6.347 9 C 0.455 3.545 10 O -0.490 6.490 11 C -0.049 4.049 12 C -0.184 4.184 13 C -0.053 4.053 14 C -0.233 4.233 15 C 0.159 3.841 16 O -0.176 6.176 17 C -0.392 4.392 18 H 0.093 0.907 19 C 0.039 3.961 20 N -0.861 5.861 21 Si 0.942 3.058 22 H -0.273 1.273 23 H -0.277 1.277 24 H -0.267 1.267 25 C -0.192 4.192 26 C -0.056 4.056 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.055 0.945 33 H 0.051 0.949 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.106 0.894 39 H 0.105 0.895 40 H 0.106 0.894 41 H 0.128 0.872 42 H 0.270 0.730 43 H 0.118 0.882 44 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.825 10.461 -16.184 26.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.107 4.107 3 C -0.213 4.213 4 C -0.199 4.199 5 C 0.227 3.773 6 O -0.295 6.295 7 C -0.063 4.063 8 O -0.265 6.265 9 C 0.297 3.703 10 O -0.376 6.376 11 C -0.086 4.086 12 C -0.185 4.185 13 C -0.071 4.071 14 C -0.253 4.253 15 C 0.105 3.895 16 O -0.079 6.079 17 C -0.468 4.468 18 H 0.110 0.890 19 C -0.165 4.165 20 N -0.496 5.496 21 Si 0.766 3.234 22 H -0.198 1.198 23 H -0.202 1.202 24 H -0.192 1.192 25 C -0.211 4.211 26 C -0.074 4.074 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.096 0.904 31 H 0.089 0.911 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.121 0.879 35 H 0.121 0.879 36 H 0.120 0.880 37 H 0.120 0.880 38 H 0.124 0.876 39 H 0.123 0.877 40 H 0.124 0.876 41 H 0.146 0.854 42 H 0.080 0.920 43 H 0.136 0.864 44 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -18.459 10.575 -15.933 26.578 hybrid contribution -0.063 -1.107 0.190 1.125 sum -18.522 9.468 -15.743 26.088 Atomic orbital electron populations 1.21854 0.94628 1.01902 1.02145 1.20949 0.95626 0.96906 0.97204 1.21982 1.02708 0.95117 1.01536 1.22147 0.92644 1.03743 1.01365 1.24524 0.91572 0.75806 0.85360 1.90410 1.71281 1.35831 1.32015 1.23397 0.79732 1.03526 0.99642 1.86621 1.17314 1.73391 1.49138 1.24379 0.90719 0.74473 0.80720 1.90711 1.77327 1.41634 1.27898 1.20096 0.85183 1.03605 0.99723 1.18633 1.08970 0.94053 0.96890 1.20536 0.96238 0.93142 0.97193 1.21112 1.07644 1.00763 0.95748 1.19410 0.90897 0.91835 0.87330 1.83976 1.65413 1.24864 1.33602 1.21347 1.35592 0.82208 1.07689 0.88995 1.25305 0.95893 1.00434 0.94887 1.70038 1.34547 1.36817 1.08184 0.85700 0.79166 0.80381 0.78113 1.19840 1.20240 1.19185 1.20159 1.08188 0.92228 1.00548 1.20428 0.96445 0.98187 0.92387 0.92488 0.92318 0.92533 0.90434 0.91140 0.92616 0.93007 0.87920 0.87911 0.87954 0.87952 0.87619 0.87664 0.87614 0.85434 0.91978 0.86381 0.87169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 9.19 37.16 0.34 -0.34 16 2 C -0.09 -0.54 2.57 -90.62 -0.23 -0.77 16 3 C -0.16 -1.08 8.93 37.16 0.33 -0.75 16 4 C -0.16 -0.85 5.11 -27.88 -0.14 -1.00 16 5 C 0.35 3.03 6.96 -29.03 -0.20 2.82 16 6 O -0.42 -5.04 14.11 -13.71 -0.19 -5.23 16 7 C 0.01 0.11 5.88 36.00 0.21 0.32 16 8 O -0.35 -4.40 9.75 -45.90 -0.45 -4.85 16 9 C 0.45 6.49 7.95 36.01 0.29 6.77 16 10 O -0.49 -8.57 15.78 -18.75 -0.30 -8.86 16 11 C -0.05 -0.63 5.94 -29.04 -0.17 -0.81 16 12 C -0.18 -3.17 4.38 -104.58 -0.46 -3.63 16 13 C -0.05 -0.98 9.69 -39.61 -0.38 -1.37 16 14 C -0.23 -5.15 9.17 -39.39 -0.36 -5.51 16 15 C 0.16 3.91 6.65 -39.11 -0.26 3.65 16 16 O -0.18 -5.05 9.76 0.05 0.00 -5.05 16 17 C -0.39 -11.00 9.49 30.89 0.29 -10.71 16 18 H 0.09 2.38 5.20 -52.49 -0.27 2.11 16 19 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 20 N -0.86 -25.27 13.67 55.48 0.76 -24.51 16 21 Si 0.94 20.53 29.55 -169.99 -5.02 15.50 16 22 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 23 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 24 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 25 C -0.19 -4.12 9.99 -39.39 -0.39 -4.52 16 26 C -0.06 -1.02 9.69 -39.61 -0.38 -1.40 16 27 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 29 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16 30 H 0.08 0.56 7.96 -51.93 -0.41 0.15 16 31 H 0.07 0.63 5.96 -51.93 -0.31 0.32 16 32 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.10 0.85 8.13 -51.93 -0.42 0.42 16 37 H 0.10 0.84 8.13 -51.93 -0.42 0.42 16 38 H 0.11 1.14 8.08 -51.93 -0.42 0.72 16 39 H 0.11 1.15 8.08 -51.93 -0.42 0.73 16 40 H 0.11 1.67 8.06 -52.49 -0.42 1.24 16 41 H 0.13 2.80 5.64 -52.49 -0.30 2.50 16 42 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 43 H 0.12 2.43 8.06 -52.49 -0.42 2.01 16 44 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 LS Contribution 377.70 15.07 5.69 5.69 Total: -1.00 -34.22 377.70 -7.47 -41.69 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -6.34 Total: 1.86 kcal Atomic # 6 Polarization: -14.62 SS G_CDS: -1.62 Total: -16.24 kcal Atomic # 7 Polarization: -25.27 SS G_CDS: 0.76 Total: -24.51 kcal Atomic # 8 Polarization: -23.06 SS G_CDS: -0.94 Total: -24.00 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.22 -7.47 -41.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751663578.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.112 kcal (2) G-P(sol) polarization free energy of solvation -34.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds