Wall clock time and date at job start Tue Mar 31 2020 12:43:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47216 * 2 1 4 4 C 1.52996 * 109.47197 * 119.99832 * 2 1 3 5 5 C 1.50705 * 109.47537 * 175.00062 * 4 2 1 6 6 O 1.20761 * 119.99425 * 0.02562 * 5 4 2 7 7 C 1.50695 * 120.00013 * 180.02562 * 5 4 2 8 8 O 1.45203 * 109.46918 * 179.97438 * 7 5 4 9 9 C 1.34225 * 117.00065 * 179.97438 * 8 7 5 10 10 O 1.20830 * 120.00117 * 0.02562 * 9 8 7 11 11 C 1.50705 * 120.00089 * 180.02562 * 9 8 7 12 12 C 1.50695 * 109.46992 * 180.02562 * 11 9 8 13 13 C 1.38299 * 119.93247 * 90.00201 * 12 11 9 14 14 C 1.38101 * 120.07425 * 179.97438 * 13 12 11 15 15 C 1.38886 * 119.92536 * 0.02562 * 14 13 12 16 16 O 1.35750 * 120.06440 * 180.02562 * 15 14 13 17 17 C 1.34828 * 117.00075 * 5.53777 * 16 15 14 18 18 H 1.07993 * 120.00518 * 354.94289 * 17 16 15 19 19 C 1.38663 * 119.99751 * 174.94575 * 17 16 15 20 20 N 1.31556 * 120.00220 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 119.99821 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47448 * 89.99502 * 21 19 17 23 23 H 1.48501 * 109.47175 * 209.99712 * 21 19 17 24 24 H 1.48506 * 109.47415 * 329.99678 * 21 19 17 25 25 C 1.38874 * 119.86623 * 0.27854 * 15 14 13 26 26 C 1.38106 * 119.92542 * 359.44577 * 25 15 14 27 27 H 1.09002 * 109.47129 * 300.00215 * 1 2 3 28 28 H 1.08998 * 109.46722 * 59.99699 * 1 2 3 29 29 H 1.08992 * 109.47132 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47408 * 239.99815 * 2 1 3 31 31 H 1.09007 * 109.47297 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47521 * 299.99812 * 3 2 1 33 33 H 1.09002 * 109.47247 * 59.99857 * 3 2 1 34 34 H 1.08999 * 109.46843 * 54.99975 * 4 2 1 35 35 H 1.09001 * 109.47541 * 295.00508 * 4 2 1 36 36 H 1.09005 * 109.47236 * 60.00331 * 7 5 4 37 37 H 1.08992 * 109.47428 * 299.99735 * 7 5 4 38 38 H 1.08998 * 109.46621 * 60.00590 * 11 9 8 39 39 H 1.08996 * 109.47266 * 300.00254 * 11 9 8 40 40 H 1.07999 * 119.96503 * 0.02562 * 13 12 11 41 41 H 1.07992 * 120.03608 * 180.02562 * 14 13 12 42 42 H 0.96996 * 120.00178 * 179.97438 * 20 19 17 43 43 H 1.07996 * 120.03745 * 179.72497 * 25 15 14 44 44 H 1.07997 * 119.96326 * 180.27708 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5420 -0.8294 1.1890 6 8 4.1425 -0.3759 0.2445 7 6 4.2943 -1.5033 2.3073 8 8 5.7167 -1.4803 2.0163 9 6 6.5329 -2.0442 2.9205 10 8 6.0739 -2.5411 3.9218 11 6 8.0217 -2.0576 2.6870 12 6 8.7050 -2.7446 3.8411 13 6 8.9194 -4.1103 3.8023 14 6 9.5458 -4.7427 4.8582 15 6 9.9601 -4.0058 5.9601 16 8 10.5766 -4.6245 6.9993 17 6 10.8596 -5.9344 6.8511 18 1 10.5244 -6.4631 5.9712 19 6 11.5812 -6.6026 7.8287 20 7 11.9899 -5.9584 8.9004 21 14 11.9739 -8.4172 7.6231 22 1 13.2709 -8.5659 6.9151 23 1 12.0630 -9.0589 8.9593 24 1 10.9002 -9.0695 6.8312 25 6 9.7377 -2.6355 5.9989 26 6 9.1158 -2.0081 4.9373 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 3.1301 1.4425 0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6054 -1.7197 1.2951 35 1 1.7516 -0.1583 2.1370 36 1 3.9595 -2.5366 2.3995 37 1 4.1057 -0.9754 3.2420 38 1 8.3859 -1.0335 2.6061 39 1 8.2398 -2.5949 1.7641 40 1 8.5975 -4.6827 2.9450 41 1 9.7134 -5.8091 4.8270 42 1 12.4943 -6.4260 9.5844 43 1 10.0546 -2.0605 6.8564 44 1 8.9465 -0.9418 4.9649 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000751663578.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:56 Heat of formation + Delta-G solvation = -157.878910 kcal Electronic energy + Delta-G solvation = -25289.651123 eV Core-core repulsion = 21365.022025 eV Total energy + Delta-G solvation = -3924.629098 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.76492 -40.85150 -40.47173 -38.47762 -37.35826 -36.47120 -34.42602 -33.09948 -31.81428 -31.36733 -28.81409 -27.97351 -27.75059 -26.91564 -23.66753 -23.17311 -21.76078 -21.49525 -20.44907 -19.86510 -18.87143 -18.74360 -17.84601 -17.72732 -16.88171 -16.55019 -16.42330 -16.18932 -16.01515 -15.66427 -15.47363 -15.24368 -15.02811 -14.58025 -14.48406 -14.31102 -13.99299 -13.67054 -13.57999 -13.33067 -13.04094 -12.98081 -12.89004 -12.75771 -12.51296 -12.35838 -12.31160 -12.14290 -12.12014 -11.83210 -11.75409 -11.60037 -11.57214 -11.19933 -10.80308 -10.56131 -9.79381 -8.96429 -8.48019 -6.16353 0.55945 0.59184 0.87114 1.21253 1.34761 1.42671 1.52369 1.58807 2.17377 2.78388 2.96447 3.17833 3.49347 3.74945 3.77023 3.97242 3.99543 4.01201 4.10718 4.13376 4.16967 4.22496 4.41266 4.41624 4.56284 4.66751 4.69973 4.72710 4.75317 4.77686 4.85967 5.03209 5.04752 5.10978 5.13335 5.25461 5.30226 5.34271 5.43795 5.48464 5.53234 5.69486 5.72014 6.01717 6.19085 6.44765 6.76714 6.96429 7.76578 8.75116 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.033154 B = 0.001853 C = 0.001817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.329864 B =15108.058732 C =15404.619827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.090 4.090 3 C -0.156 4.156 4 C -0.156 4.156 5 C 0.362 3.638 6 O -0.463 6.463 7 C 0.001 3.999 8 O -0.351 6.351 9 C 0.464 3.536 10 O -0.530 6.530 11 C -0.050 4.050 12 C -0.159 4.159 13 C -0.055 4.055 14 C -0.244 4.244 15 C 0.117 3.883 16 O -0.231 6.231 17 C -0.415 4.415 18 H 0.102 0.898 19 C -0.023 4.023 20 N -0.920 5.920 21 Si 1.020 2.980 22 H -0.262 1.262 23 H -0.271 1.271 24 H -0.254 1.254 25 C -0.206 4.206 26 C -0.053 4.053 27 H 0.065 0.935 28 H 0.056 0.944 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.047 0.953 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.127 0.873 35 H 0.125 0.875 36 H 0.116 0.884 37 H 0.116 0.884 38 H 0.139 0.861 39 H 0.137 0.863 40 H 0.141 0.859 41 H 0.120 0.880 42 H 0.273 0.727 43 H 0.115 0.885 44 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.056 10.853 -18.728 30.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.108 4.108 3 C -0.213 4.213 4 C -0.193 4.193 5 C 0.238 3.762 6 O -0.337 6.337 7 C -0.073 4.073 8 O -0.268 6.268 9 C 0.308 3.692 10 O -0.418 6.418 11 C -0.087 4.087 12 C -0.159 4.159 13 C -0.073 4.073 14 C -0.264 4.264 15 C 0.066 3.934 16 O -0.138 6.138 17 C -0.491 4.491 18 H 0.119 0.881 19 C -0.221 4.221 20 N -0.558 5.558 21 Si 0.839 3.161 22 H -0.187 1.187 23 H -0.196 1.196 24 H -0.177 1.177 25 C -0.225 4.225 26 C -0.070 4.070 27 H 0.084 0.916 28 H 0.075 0.925 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.145 0.855 35 H 0.143 0.857 36 H 0.134 0.866 37 H 0.134 0.866 38 H 0.157 0.843 39 H 0.154 0.846 40 H 0.159 0.841 41 H 0.138 0.862 42 H 0.082 0.918 43 H 0.133 0.867 44 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -20.733 11.008 -18.538 29.911 hybrid contribution 0.398 -0.934 0.709 1.238 sum -20.335 10.074 -17.829 28.859 Atomic orbital electron populations 1.21819 0.93199 1.02601 1.02518 1.20949 0.96721 0.96137 0.97030 1.21969 1.01180 0.96078 1.02105 1.22216 0.89921 1.05376 1.01785 1.24920 0.92865 0.74277 0.84154 1.90417 1.72227 1.37670 1.33386 1.23784 0.77950 1.04819 1.00738 1.86593 1.18997 1.72720 1.48517 1.24357 0.91173 0.73566 0.80101 1.90721 1.78101 1.43526 1.29470 1.20216 0.84232 1.05500 0.98714 1.19156 1.05862 0.93595 0.97328 1.20953 0.95015 0.94245 0.97072 1.21234 1.08269 1.00589 0.96274 1.19974 0.92184 0.93272 0.87936 1.83940 1.68356 1.25406 1.36084 1.21838 1.36168 0.82685 1.08426 0.88086 1.26614 0.95409 1.05786 0.94245 1.70184 1.36733 1.39206 1.09651 0.84572 0.79459 0.73606 0.78474 1.18668 1.19561 1.17727 1.20441 1.08819 0.91376 1.01887 1.20897 0.94705 1.00201 0.91239 0.91617 0.92500 0.91671 0.92036 0.93427 0.92603 0.91948 0.85512 0.85669 0.86637 0.86615 0.84315 0.84559 0.84112 0.86242 0.91806 0.86731 0.83284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.95 9.19 71.98 0.66 -0.29 16 2 C -0.09 -0.92 2.57 -10.80 -0.03 -0.95 16 3 C -0.16 -1.95 8.93 71.98 0.64 -1.31 16 4 C -0.16 -1.17 5.11 29.85 0.15 -1.02 16 5 C 0.36 5.36 6.96 29.10 0.20 5.56 16 6 O -0.46 -10.41 14.11 17.39 0.25 -10.17 16 7 C 0.00 0.02 5.88 71.23 0.42 0.44 16 8 O -0.35 -7.79 9.75 -45.00 -0.44 -8.22 16 9 C 0.46 11.53 7.95 71.24 0.57 12.10 16 10 O -0.53 -17.05 15.78 21.95 0.35 -16.71 16 11 C -0.05 -1.05 5.94 29.10 0.17 -0.88 16 12 C -0.16 -4.92 4.38 -19.84 -0.09 -5.01 16 13 C -0.05 -1.92 9.69 22.25 0.22 -1.70 16 14 C -0.24 -10.90 9.17 22.39 0.21 -10.70 16 15 C 0.12 5.97 6.65 22.58 0.15 6.12 16 16 O -0.23 -14.21 9.76 -22.72 -0.22 -14.44 16 17 C -0.42 -24.55 9.49 67.92 0.64 -23.91 16 18 H 0.10 5.49 5.20 -2.91 -0.02 5.47 16 19 C -0.02 -1.32 5.49 84.84 0.47 -0.86 16 20 N -0.92 -56.98 13.67 21.62 0.30 -56.68 16 21 Si 1.02 43.22 29.55 68.60 2.03 45.25 16 22 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 23 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 24 H -0.25 -10.00 7.11 99.48 0.71 -9.30 16 25 C -0.21 -8.99 9.99 22.39 0.22 -8.77 16 26 C -0.05 -1.78 9.69 22.25 0.22 -1.57 16 27 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 28 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 29 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.06 0.83 7.96 -2.39 -0.02 0.81 16 31 H 0.05 0.83 5.96 -2.38 -0.01 0.81 16 32 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.13 0.41 8.14 -2.39 -0.02 0.39 16 35 H 0.13 0.45 8.14 -2.39 -0.02 0.43 16 36 H 0.12 1.56 8.13 -2.38 -0.02 1.55 16 37 H 0.12 1.56 8.13 -2.39 -0.02 1.54 16 38 H 0.14 2.16 8.08 -2.39 -0.02 2.14 16 39 H 0.14 2.18 8.08 -2.39 -0.02 2.16 16 40 H 0.14 3.91 8.06 -2.91 -0.02 3.88 16 41 H 0.12 5.40 5.64 -2.91 -0.02 5.38 16 42 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 43 H 0.11 4.93 8.06 -2.91 -0.02 4.91 16 44 H 0.15 3.88 8.06 -2.91 -0.02 3.86 16 Total: -1.00 -80.94 377.70 8.08 -72.86 By element: Atomic # 1 Polarization: 19.85 SS G_CDS: 1.00 Total: 20.86 kcal Atomic # 6 Polarization: -37.57 SS G_CDS: 4.82 Total: -32.75 kcal Atomic # 7 Polarization: -56.98 SS G_CDS: 0.30 Total: -56.68 kcal Atomic # 8 Polarization: -49.46 SS G_CDS: -0.07 Total: -49.53 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -80.94 8.08 -72.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751663578.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.021 kcal (2) G-P(sol) polarization free energy of solvation -80.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds