Wall clock time and date at job start Tue Mar 31 2020 12:57:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42893 * 109.47215 * 2 1 4 4 C 1.53000 * 109.46950 * 239.99656 * 2 1 3 5 5 C 1.50702 * 109.47022 * 60.00246 * 4 2 1 6 6 O 1.20819 * 120.00288 * 359.97438 * 5 4 2 7 7 O 1.34233 * 119.99413 * 179.97438 * 5 4 2 8 8 C 1.45201 * 116.99421 * 179.97438 * 7 5 4 9 9 C 1.50695 * 109.47203 * 179.97438 * 8 7 5 10 10 C 1.38300 * 119.93634 * 269.73207 * 9 8 7 11 11 C 1.38103 * 120.07235 * 179.72038 * 10 9 8 12 12 C 1.38881 * 119.92859 * 0.56979 * 11 10 9 13 13 O 1.35743 * 120.07033 * 179.67702 * 12 11 10 14 14 C 1.34829 * 117.00323 * 174.48588 * 13 12 11 15 15 H 1.08000 * 119.99772 * 5.06302 * 14 13 12 16 16 C 1.38655 * 120.00285 * 185.06067 * 14 13 12 17 17 N 1.31556 * 119.99986 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99817 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47529 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.47049 * 119.99936 * 18 16 14 21 21 H 1.48497 * 109.46877 * 239.99598 * 18 16 14 22 22 C 1.38884 * 119.86119 * 359.70391 * 12 11 10 23 23 C 1.38100 * 119.93123 * 0.02562 * 22 12 11 24 24 C 1.53002 * 109.46727 * 120.00033 * 2 1 3 25 25 C 1.52995 * 117.50080 * 13.61388 * 24 2 1 26 26 C 1.52994 * 60.00304 * 252.51451 * 25 24 2 27 27 H 1.08997 * 109.47439 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47037 * 300.00583 * 1 2 3 29 29 H 1.09007 * 109.46807 * 60.00083 * 1 2 3 30 30 H 0.96699 * 113.99803 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.46904 * 299.99970 * 4 2 1 32 32 H 1.09000 * 109.46943 * 180.02562 * 4 2 1 33 33 H 1.08999 * 109.47236 * 60.00282 * 8 7 5 34 34 H 1.09004 * 109.47450 * 300.00284 * 8 7 5 35 35 H 1.08004 * 119.96372 * 359.97187 * 10 9 8 36 36 H 1.07998 * 120.03412 * 180.26808 * 11 10 9 37 37 H 0.97002 * 119.99992 * 180.02562 * 17 16 14 38 38 H 1.07996 * 120.03050 * 179.97438 * 22 12 11 39 39 H 1.08003 * 119.96708 * 180.02562 * 23 22 12 40 40 H 1.08998 * 115.55106 * 159.33012 * 24 2 1 41 41 H 1.08996 * 117.49922 * 0.02562 * 25 24 2 42 42 H 1.09002 * 117.49505 * 145.01853 * 25 24 2 43 43 H 1.08999 * 117.49619 * 252.50853 * 26 25 24 44 44 H 1.09001 * 117.49531 * 107.49161 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0109 -2.4797 6 8 0.8427 0.9712 -2.3689 7 8 1.8624 -0.4694 -3.6988 8 6 1.3428 0.2645 -4.8389 9 6 1.8083 -0.3917 -6.1131 10 6 2.9965 0.0047 -6.6994 11 6 3.4286 -0.5987 -7.8640 12 6 2.6627 -1.5963 -8.4530 13 8 3.0815 -2.1867 -9.6013 14 6 2.3512 -3.2240 -10.0580 15 1 1.4323 -3.4978 -9.5609 16 6 2.7798 -3.9393 -11.1658 17 7 3.8993 -3.6061 -11.7710 18 14 1.7675 -5.3760 -11.7987 19 1 0.5619 -5.5448 -10.9484 20 1 1.3526 -5.1100 -13.1996 21 1 2.5838 -6.6156 -11.7512 22 6 1.4671 -1.9882 -7.8650 23 6 1.0432 -1.3848 -6.6973 24 6 2.0400 -0.7213 1.2493 25 6 1.0319 -1.5507 2.0471 26 6 1.5415 -0.2211 2.6066 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5140 0.8900 29 1 -0.3633 0.5139 -0.8901 30 1 2.9704 1.4235 0.0004 31 1 1.6767 -1.7490 -1.2491 32 1 3.1300 -0.7217 -1.2490 33 1 1.7059 1.2917 -4.8060 34 1 0.2532 0.2630 -4.8060 35 1 3.5892 0.7842 -6.2436 36 1 4.3588 -0.2917 -8.3189 37 1 4.1990 -4.1063 -12.5463 38 1 0.8691 -2.7633 -8.3209 39 1 0.1137 -1.6894 -6.2393 40 1 3.0641 -1.0902 1.1940 41 1 0.0055 -1.5830 1.6817 42 1 1.3927 -2.4659 2.5167 43 1 2.2376 -0.2615 3.4444 44 1 0.8503 0.6217 2.6096 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000756325064.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:48 Heat of formation + Delta-G solvation = -111.189432 kcal Electronic energy + Delta-G solvation = -25845.806496 eV Core-core repulsion = 21923.202005 eV Total energy + Delta-G solvation = -3922.604491 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.75761 -39.35259 -38.94805 -36.99021 -36.09886 -35.59936 -32.46896 -32.12523 -30.58349 -30.24540 -28.48408 -26.08287 -25.05630 -24.21493 -22.75722 -22.06849 -21.07420 -20.56070 -19.96239 -18.09392 -17.75859 -17.30141 -17.01150 -16.49986 -16.31299 -15.69321 -15.19421 -14.77171 -14.62872 -14.38782 -14.17096 -13.72329 -13.57770 -13.39933 -13.28321 -12.80356 -12.74010 -12.62772 -12.38505 -12.13677 -11.95793 -11.72434 -11.55356 -11.38213 -11.22358 -11.02492 -10.91392 -10.79344 -10.71500 -10.59015 -10.48233 -10.43268 -10.36424 -9.99184 -9.41881 -8.92149 -8.27756 -7.33887 -6.53526 -4.12132 1.94811 2.14420 2.26461 2.90149 3.08808 3.09925 3.15173 3.32300 3.90050 4.08506 4.12553 4.29348 4.49489 4.52958 4.62371 4.69086 4.89266 4.98229 5.06165 5.15846 5.19036 5.21830 5.25200 5.26758 5.37163 5.48646 5.57844 5.59657 5.64192 5.66368 5.75906 5.76509 5.81916 6.10830 6.12584 6.32535 6.58511 6.64678 6.80144 6.96473 7.14500 7.26339 7.34677 7.42898 7.70862 7.87693 7.91446 8.91860 9.59932 10.64028 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.025726 B = 0.002053 C = 0.001984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.141988 B =13637.872760 C =14111.672122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.178 3.822 3 O -0.539 6.539 4 C -0.142 4.142 5 C 0.456 3.544 6 O -0.494 6.494 7 O -0.354 6.354 8 C 0.130 3.870 9 C -0.204 4.204 10 C -0.049 4.049 11 C -0.196 4.196 12 C 0.163 3.837 13 O -0.172 6.172 14 C -0.393 4.393 15 H 0.094 0.906 16 C 0.040 3.960 17 N -0.859 5.859 18 Si 0.943 3.057 19 H -0.266 1.266 20 H -0.275 1.275 21 H -0.275 1.275 22 C -0.238 4.238 23 C -0.045 4.045 24 C -0.190 4.190 25 C -0.177 4.177 26 C -0.164 4.164 27 H 0.068 0.932 28 H 0.062 0.938 29 H 0.090 0.910 30 H 0.371 0.629 31 H 0.113 0.887 32 H 0.106 0.894 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.113 0.887 36 H 0.120 0.880 37 H 0.271 0.729 38 H 0.130 0.870 39 H 0.108 0.892 40 H 0.107 0.893 41 H 0.103 0.897 42 H 0.095 0.905 43 H 0.094 0.906 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.027 4.036 23.865 24.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.137 3.863 3 O -0.344 6.344 4 C -0.180 4.180 5 C 0.299 3.701 6 O -0.382 6.382 7 O -0.272 6.272 8 C 0.058 3.942 9 C -0.205 4.205 10 C -0.067 4.067 11 C -0.215 4.215 12 C 0.108 3.892 13 O -0.075 6.075 14 C -0.469 4.469 15 H 0.112 0.888 16 C -0.165 4.165 17 N -0.493 5.493 18 Si 0.767 3.233 19 H -0.190 1.190 20 H -0.201 1.201 21 H -0.201 1.201 22 C -0.257 4.257 23 C -0.064 4.064 24 C -0.209 4.209 25 C -0.214 4.214 26 C -0.200 4.200 27 H 0.087 0.913 28 H 0.081 0.919 29 H 0.109 0.891 30 H 0.217 0.783 31 H 0.131 0.869 32 H 0.124 0.876 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.131 0.869 36 H 0.138 0.862 37 H 0.081 0.919 38 H 0.147 0.853 39 H 0.126 0.874 40 H 0.126 0.874 41 H 0.122 0.878 42 H 0.113 0.887 43 H 0.112 0.888 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -4.560 4.427 23.473 24.318 hybrid contribution 0.172 -0.928 -0.383 1.018 sum -4.388 3.499 23.090 23.763 Atomic orbital electron populations 1.22145 0.92276 1.02234 1.04838 1.20348 0.95236 0.81648 0.89072 1.86708 1.26025 1.24917 1.96720 1.22156 1.03603 1.01795 0.90471 1.23378 0.78288 0.83222 0.85232 1.90630 1.35057 1.25389 1.87090 1.86654 1.69692 1.56076 1.14733 1.21671 0.97940 0.94018 0.80573 1.18883 0.99538 1.04791 0.97261 1.20510 0.94244 0.97699 0.94290 1.20200 1.01747 1.01061 0.98501 1.19439 0.91824 0.91721 0.86225 1.83976 1.49895 1.42241 1.31370 1.21419 1.05589 1.07038 1.12846 0.88823 1.25333 0.96666 0.98683 0.95843 1.70047 1.20293 1.39241 1.19718 0.85617 0.79074 0.79629 0.78942 1.19024 1.20065 1.20052 1.21146 0.99219 1.05976 0.99353 1.20620 0.97836 0.93550 0.94370 1.23002 0.99731 1.04972 0.93176 1.23143 0.99568 0.95235 1.03457 1.22876 1.03687 0.97985 0.95494 0.91344 0.91873 0.89116 0.78264 0.86920 0.87610 0.91247 0.91333 0.86911 0.86205 0.91915 0.85264 0.87355 0.87444 0.87833 0.88680 0.88801 0.88295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.50 7.18 37.16 0.27 -1.23 16 2 C 0.18 1.54 0.80 -90.62 -0.07 1.46 16 3 O -0.54 -5.44 11.86 -53.49 -0.63 -6.08 16 4 C -0.14 -1.25 5.06 -27.88 -0.14 -1.39 16 5 C 0.46 5.84 7.52 36.01 0.27 6.12 16 6 O -0.49 -7.45 12.71 -25.01 -0.32 -7.76 16 7 O -0.35 -5.19 10.20 -39.26 -0.40 -5.59 16 8 C 0.13 1.95 5.59 36.00 0.20 2.15 16 9 C -0.20 -3.54 5.52 -104.58 -0.58 -4.12 16 10 C -0.05 -0.87 9.69 -39.61 -0.38 -1.26 16 11 C -0.20 -4.07 9.99 -39.39 -0.39 -4.46 16 12 C 0.16 3.86 6.65 -39.10 -0.26 3.60 16 13 O -0.17 -4.82 9.76 0.07 0.00 -4.82 16 14 C -0.39 -10.75 9.49 30.89 0.29 -10.46 16 15 H 0.09 2.37 5.20 -52.49 -0.27 2.10 16 16 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 17 N -0.86 -24.71 13.67 55.48 0.76 -23.96 16 18 Si 0.94 20.09 29.55 -169.99 -5.02 15.07 16 19 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 20 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 21 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 22 C -0.24 -5.07 9.17 -39.39 -0.36 -5.44 16 23 C -0.05 -0.83 9.69 -39.61 -0.38 -1.21 16 24 C -0.19 -1.27 5.32 -90.62 -0.48 -1.75 16 25 C -0.18 -1.08 9.65 -26.74 -0.26 -1.34 16 26 C -0.16 -1.06 9.85 -26.73 -0.26 -1.32 16 27 H 0.07 0.53 6.74 -51.93 -0.35 0.18 16 28 H 0.06 0.57 6.96 -51.93 -0.36 0.21 16 29 H 0.09 1.10 5.52 -51.93 -0.29 0.82 16 30 H 0.37 2.42 9.05 45.56 0.41 2.83 16 31 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.99 8.07 -51.93 -0.42 0.57 16 34 H 0.07 0.98 8.08 -51.93 -0.42 0.56 16 35 H 0.11 1.69 8.06 -52.48 -0.42 1.27 16 36 H 0.12 2.38 8.06 -52.49 -0.42 1.96 16 37 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 38 H 0.13 2.74 5.64 -52.49 -0.30 2.45 16 39 H 0.11 1.70 8.06 -52.48 -0.42 1.27 16 40 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.10 0.63 5.89 -51.93 -0.31 0.32 16 42 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.10 0.72 7.29 -51.93 -0.38 0.34 16 LS Contribution 367.37 15.07 5.54 5.54 Total: -1.00 -32.37 367.37 -7.92 -40.29 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -5.20 Total: 7.00 kcal Atomic # 6 Polarization: -17.04 SS G_CDS: -2.64 Total: -19.68 kcal Atomic # 7 Polarization: -24.71 SS G_CDS: 0.76 Total: -23.96 kcal Atomic # 8 Polarization: -22.90 SS G_CDS: -1.35 Total: -24.25 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.37 -7.92 -40.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756325064.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.903 kcal (2) G-P(sol) polarization free energy of solvation -32.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds