Wall clock time and date at job start Tue Mar 31 2020 12:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42898 * 109.47580 * 2 1 4 4 C 1.52998 * 109.47004 * 120.00322 * 2 1 3 5 5 C 1.50703 * 109.46997 * 177.71764 * 4 2 1 6 6 O 1.20822 * 120.00195 * 5.96673 * 5 4 2 7 7 O 1.34228 * 119.99792 * 185.97150 * 5 4 2 8 8 C 1.45202 * 116.99899 * 179.97438 * 7 5 4 9 9 C 1.50705 * 109.47141 * 180.02562 * 8 7 5 10 10 C 1.38297 * 119.92770 * 269.72430 * 9 8 7 11 11 C 1.38101 * 120.06492 * 179.72581 * 10 9 8 12 12 C 1.38882 * 119.93196 * 0.56888 * 11 10 9 13 13 O 1.35751 * 120.06881 * 179.68159 * 12 11 10 14 14 C 1.34833 * 116.99663 * 174.61162 * 13 12 11 15 15 H 1.07997 * 120.00415 * 5.06843 * 14 13 12 16 16 C 1.38656 * 119.99775 * 185.07134 * 14 13 12 17 17 N 1.31550 * 120.00083 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 119.99990 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47452 * 89.99529 * 18 16 14 20 20 H 1.48497 * 109.47037 * 209.99741 * 18 16 14 21 21 H 1.48499 * 109.46931 * 329.99555 * 18 16 14 22 22 C 1.38877 * 119.85897 * 359.70675 * 12 11 10 23 23 C 1.38101 * 119.93275 * 0.02562 * 22 12 11 24 24 C 1.53004 * 109.46903 * 240.00124 * 2 1 3 25 25 C 1.52994 * 117.51728 * 351.28433 * 24 2 1 26 26 C 1.52998 * 60.00220 * 107.48313 * 25 24 2 27 27 H 1.08998 * 109.47817 * 185.01826 * 1 2 3 28 28 H 1.09000 * 109.47350 * 305.01816 * 1 2 3 29 29 H 1.09001 * 109.47261 * 65.01406 * 1 2 3 30 30 H 0.96697 * 114.00197 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47134 * 297.71585 * 4 2 1 32 32 H 1.08996 * 109.47553 * 57.71779 * 4 2 1 33 33 H 1.09005 * 109.47346 * 300.00082 * 8 7 5 34 34 H 1.09001 * 109.47484 * 59.99923 * 8 7 5 35 35 H 1.08000 * 119.97014 * 359.97438 * 10 9 8 36 36 H 1.08001 * 120.03572 * 180.27385 * 11 10 9 37 37 H 0.97004 * 120.00259 * 180.02562 * 17 16 14 38 38 H 1.08000 * 120.03427 * 179.97438 * 22 12 11 39 39 H 1.08000 * 119.96269 * 180.02562 * 23 22 12 40 40 H 1.09007 * 115.54910 * 205.58725 * 24 2 1 41 41 H 1.09005 * 117.50065 * 214.97377 * 25 24 2 42 42 H 1.09000 * 117.50505 * 359.97438 * 25 24 2 43 43 H 1.08999 * 117.49944 * 252.51744 * 26 25 24 44 44 H 1.09000 * 117.51906 * 107.47616 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 3.5459 -0.7705 1.2212 6 8 4.1534 -0.1870 0.3551 7 8 4.2122 -1.4627 2.1586 8 6 5.6615 -1.4667 2.0692 9 6 6.2320 -2.2889 3.1961 10 6 6.5438 -1.6859 4.4010 11 6 7.0614 -2.4377 5.4373 12 6 7.2798 -3.7983 5.2647 13 8 7.7945 -4.5387 6.2794 14 6 7.8771 -5.8703 6.0848 15 1 7.6185 -6.2929 5.1251 16 6 8.2939 -6.6973 7.1167 17 7 8.6093 -6.1826 8.2856 18 14 8.4090 -8.5421 6.8469 19 1 9.7670 -8.8867 6.3547 20 1 8.1535 -9.2467 8.1288 21 1 7.3978 -8.9594 5.8426 22 6 6.9710 -4.3997 4.0516 23 6 6.4484 -3.6435 3.0209 24 6 2.0399 -0.7213 -1.2493 25 6 1.0110 -1.4560 -2.1108 26 6 1.6339 -0.1507 -2.6097 27 1 -0.3635 -1.0237 0.0899 28 1 -0.3634 0.5897 0.8416 29 1 -0.3634 0.4341 -0.9315 30 1 2.9703 1.4235 0.0004 31 1 1.7104 -0.1844 2.1387 32 1 1.6436 -1.7365 1.2699 33 1 5.9656 -1.8977 1.1153 34 1 6.0328 -0.4443 2.1408 35 1 6.3786 -0.6268 4.5329 36 1 7.3006 -1.9671 6.3796 37 1 8.9012 -6.7611 9.0074 38 1 7.1401 -5.4575 3.9141 39 1 6.2077 -4.1108 2.0774 40 1 3.0329 -1.1629 -1.1648 41 1 1.3270 -2.3811 -2.5931 42 1 -0.0295 -1.4261 -1.7875 43 1 1.0033 0.7383 -2.6145 44 1 2.3600 -0.2165 -3.4200 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000756325066.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:51 Heat of formation + Delta-G solvation = -116.159743 kcal Electronic energy + Delta-G solvation = -25998.646081 eV Core-core repulsion = 22075.826062 eV Total energy + Delta-G solvation = -3922.820020 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.99771 -39.33542 -38.91416 -37.02457 -36.13708 -35.54005 -32.51415 -32.24810 -30.64128 -30.28070 -28.71499 -26.09312 -24.97242 -24.00178 -22.59293 -22.10132 -21.39098 -20.63695 -19.92112 -18.11942 -17.80259 -17.22248 -17.10696 -16.71248 -16.49799 -15.94146 -14.96060 -14.84645 -14.58009 -14.28994 -14.04701 -13.74078 -13.58322 -13.34989 -13.20106 -12.83106 -12.78853 -12.68398 -12.47870 -12.35420 -12.17791 -11.76365 -11.58046 -11.44984 -11.31714 -11.10615 -10.90925 -10.79882 -10.76241 -10.52783 -10.49583 -10.43316 -10.30530 -10.12252 -9.44858 -8.93943 -8.30920 -7.37222 -6.55408 -4.14132 1.89439 2.04372 2.11657 2.86166 3.07650 3.08863 3.13201 3.44776 3.88478 4.02745 4.17606 4.36868 4.40769 4.63598 4.74550 4.79951 4.86728 4.99972 5.07061 5.10783 5.14573 5.19465 5.20211 5.28228 5.37602 5.50049 5.54583 5.58836 5.60230 5.65776 5.72634 5.80773 5.85808 5.98479 6.09179 6.29230 6.42129 6.55617 6.76790 6.93157 7.11053 7.22683 7.32016 7.48103 7.67398 7.70301 7.89205 8.89720 9.57257 10.61942 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.024812 B = 0.002137 C = 0.002059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.211048 B =13101.802054 C =13594.953316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.177 3.823 3 O -0.559 6.559 4 C -0.146 4.146 5 C 0.464 3.536 6 O -0.519 6.519 7 O -0.347 6.347 8 C 0.129 3.871 9 C -0.207 4.207 10 C -0.048 4.048 11 C -0.196 4.196 12 C 0.163 3.837 13 O -0.171 6.171 14 C -0.394 4.394 15 H 0.094 0.906 16 C 0.040 3.960 17 N -0.858 5.858 18 Si 0.943 3.057 19 H -0.272 1.272 20 H -0.276 1.276 21 H -0.267 1.267 22 C -0.238 4.238 23 C -0.044 4.044 24 C -0.186 4.186 25 C -0.183 4.183 26 C -0.163 4.163 27 H 0.075 0.925 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.386 0.614 31 H 0.116 0.884 32 H 0.114 0.886 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.113 0.887 36 H 0.120 0.880 37 H 0.272 0.728 38 H 0.130 0.870 39 H 0.108 0.892 40 H 0.113 0.887 41 H 0.092 0.908 42 H 0.101 0.899 43 H 0.097 0.903 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.944 9.181 -16.324 23.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.136 3.864 3 O -0.370 6.370 4 C -0.183 4.183 5 C 0.309 3.691 6 O -0.410 6.410 7 O -0.264 6.264 8 C 0.057 3.943 9 C -0.208 4.208 10 C -0.067 4.067 11 C -0.215 4.215 12 C 0.108 3.892 13 O -0.073 6.073 14 C -0.470 4.470 15 H 0.111 0.889 16 C -0.165 4.165 17 N -0.492 5.492 18 Si 0.767 3.233 19 H -0.198 1.198 20 H -0.201 1.201 21 H -0.191 1.191 22 C -0.257 4.257 23 C -0.063 4.063 24 C -0.205 4.205 25 C -0.220 4.220 26 C -0.200 4.200 27 H 0.094 0.906 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.239 0.761 31 H 0.134 0.866 32 H 0.133 0.867 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.131 0.869 36 H 0.138 0.862 37 H 0.082 0.918 38 H 0.147 0.853 39 H 0.126 0.874 40 H 0.131 0.869 41 H 0.111 0.889 42 H 0.119 0.881 43 H 0.115 0.885 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -14.161 9.423 -16.074 23.403 hybrid contribution 0.921 -1.164 -0.175 1.495 sum -13.240 8.259 -16.249 22.529 Atomic orbital electron populations 1.21873 0.91985 1.02659 1.03431 1.20339 0.94198 0.82021 0.89845 1.86431 1.28935 1.24890 1.96729 1.22262 0.88644 1.05276 1.02163 1.23646 0.91519 0.75222 0.78737 1.90540 1.70459 1.43540 1.36460 1.86681 1.23703 1.65826 1.50153 1.21735 0.74831 0.99900 0.97837 1.18852 1.11496 0.94420 0.95992 1.20506 0.96153 0.98367 0.91639 1.20202 1.09194 0.91962 1.00142 1.19442 0.90123 0.91458 0.88156 1.83980 1.67947 1.20016 1.35389 1.21373 1.47179 0.78676 0.99759 0.88862 1.25333 0.96227 1.00555 0.94358 1.70033 1.40551 1.36319 1.02302 0.85680 0.79068 0.80225 0.78299 1.19776 1.20147 1.19102 1.21140 1.09501 1.01059 0.94010 1.20609 0.95599 0.92514 0.97567 1.23175 1.00407 1.04482 0.92408 1.23149 0.98638 0.96298 1.03933 1.22803 1.03479 0.97245 0.96470 0.90571 0.91375 0.91235 0.76114 0.86619 0.86736 0.91205 0.91074 0.86889 0.86172 0.91825 0.85252 0.87382 0.86909 0.88902 0.88050 0.88505 0.88971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 7.44 37.15 0.28 -0.72 16 2 C 0.18 1.60 0.92 -90.62 -0.08 1.52 16 3 O -0.56 -6.16 12.87 -53.60 -0.69 -6.85 16 4 C -0.15 -1.29 5.10 -27.88 -0.14 -1.44 16 5 C 0.46 5.53 7.21 36.01 0.26 5.79 16 6 O -0.52 -6.80 11.88 -25.04 -0.30 -7.09 16 7 O -0.35 -4.84 10.20 -39.25 -0.40 -5.25 16 8 C 0.13 1.84 5.59 36.01 0.20 2.04 16 9 C -0.21 -3.50 5.52 -104.58 -0.58 -4.08 16 10 C -0.05 -0.84 9.69 -39.61 -0.38 -1.23 16 11 C -0.20 -4.02 9.99 -39.39 -0.39 -4.41 16 12 C 0.16 3.83 6.65 -39.11 -0.26 3.57 16 13 O -0.17 -4.75 9.76 0.04 0.00 -4.75 16 14 C -0.39 -10.70 9.49 30.89 0.29 -10.41 16 15 H 0.09 2.33 5.20 -52.49 -0.27 2.06 16 16 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 17 N -0.86 -24.55 13.67 55.48 0.76 -23.80 16 18 Si 0.94 19.94 29.55 -169.99 -5.02 14.92 16 19 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 20 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 21 H -0.27 -5.42 7.11 56.52 0.40 -5.01 16 22 C -0.24 -5.01 9.17 -39.40 -0.36 -5.37 16 23 C -0.04 -0.80 9.69 -39.61 -0.38 -1.18 16 24 C -0.19 -1.74 4.70 -90.62 -0.43 -2.17 16 25 C -0.18 -1.38 9.57 -26.73 -0.26 -1.63 16 26 C -0.16 -1.38 9.78 -26.73 -0.26 -1.64 16 27 H 0.08 0.41 7.32 -51.93 -0.38 0.03 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.48 6.71 -51.93 -0.35 0.13 16 30 H 0.39 4.29 6.54 45.56 0.30 4.59 16 31 H 0.12 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.07 0.94 8.08 -51.93 -0.42 0.52 16 34 H 0.07 0.94 8.08 -51.93 -0.42 0.52 16 35 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 36 H 0.12 2.36 8.06 -52.49 -0.42 1.94 16 37 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 38 H 0.13 2.71 5.64 -52.49 -0.30 2.41 16 39 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 40 H 0.11 1.26 6.08 -51.93 -0.32 0.94 16 41 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.10 0.63 5.89 -51.93 -0.31 0.32 16 43 H 0.10 0.81 7.58 -51.93 -0.39 0.42 16 44 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 365.56 15.07 5.51 5.51 Total: -1.00 -30.50 365.56 -8.11 -38.61 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -5.37 Total: 9.07 kcal Atomic # 6 Polarization: -17.78 SS G_CDS: -2.59 Total: -20.38 kcal Atomic # 7 Polarization: -24.55 SS G_CDS: 0.76 Total: -23.80 kcal Atomic # 8 Polarization: -22.55 SS G_CDS: -1.39 Total: -23.94 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.92 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.50 -8.11 -38.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756325066.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.548 kcal (2) G-P(sol) polarization free energy of solvation -30.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds