Wall clock time and date at job start Tue Mar 31 2020 12:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47414 * 2 1 4 4 H 1.09000 * 110.32892 * 304.20118 * 3 2 1 5 5 C 1.54479 * 110.37036 * 181.83723 * 3 2 1 6 6 C 1.54684 * 104.07598 * 217.09931 * 5 3 2 7 7 C 1.54478 * 103.98207 * 0.13153 * 6 5 3 8 8 H 1.09000 * 110.37794 * 264.96819 * 7 6 5 9 9 C 1.50702 * 110.37411 * 142.73391 * 7 6 5 10 10 O 1.20823 * 120.00626 * 246.55584 * 9 7 6 11 11 O 1.34231 * 119.99488 * 66.55698 * 9 7 6 12 12 C 1.45200 * 117.00216 * 180.02562 * 11 9 7 13 13 C 1.50695 * 109.47246 * 179.97438 * 12 11 9 14 14 C 1.38296 * 119.93408 * 90.00241 * 13 12 11 15 15 C 1.38098 * 120.07035 * 179.72120 * 14 13 12 16 16 C 1.38874 * 119.93279 * 0.25429 * 15 14 13 17 17 O 1.35745 * 120.07194 * 179.97438 * 16 15 14 18 18 C 1.34830 * 117.00000 * 354.46775 * 17 16 15 19 19 H 1.07993 * 119.99847 * 5.04988 * 18 17 16 20 20 C 1.38657 * 120.00052 * 185.05927 * 18 17 16 21 21 N 1.31557 * 120.00093 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00005 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47021 * 59.99607 * 22 20 18 24 24 H 1.48499 * 109.47115 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47145 * 299.99505 * 22 20 18 26 26 C 1.38885 * 119.85897 * 359.97438 * 16 15 14 27 27 C 1.38090 * 119.93070 * 0.02562 * 26 16 15 28 28 O 1.44424 * 110.37035 * 66.45251 * 3 2 1 29 29 H 1.08996 * 109.47313 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46866 * 300.00031 * 1 2 3 31 31 H 1.09002 * 109.47053 * 59.99735 * 1 2 3 32 32 H 1.09000 * 109.46866 * 239.99969 * 2 1 3 33 33 H 1.09002 * 109.47053 * 120.00265 * 2 1 3 34 34 H 1.08995 * 110.51160 * 335.83195 * 5 3 2 35 35 H 1.08998 * 110.51144 * 98.40833 * 5 3 2 36 36 H 1.09001 * 110.61299 * 241.48852 * 6 5 3 37 37 H 1.08997 * 110.49526 * 118.72479 * 6 5 3 38 38 H 1.09006 * 109.47067 * 59.99486 * 12 11 9 39 39 H 1.09004 * 109.46692 * 300.00026 * 12 11 9 40 40 H 1.07998 * 119.96537 * 359.97438 * 14 13 12 41 41 H 1.08003 * 120.03608 * 180.22882 * 15 14 13 42 42 H 0.97002 * 120.00107 * 179.97438 * 21 20 18 43 43 H 1.08004 * 120.02973 * 179.97438 * 26 16 15 44 44 H 1.08004 * 119.96510 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6247 1.9910 -0.8454 5 6 3.5840 1.4669 -0.0464 6 6 3.9688 2.6596 0.8602 7 6 2.6108 3.2107 1.3484 8 1 2.2834 4.0323 0.7113 9 6 2.7144 3.6679 2.7807 10 8 2.1059 3.0849 3.6466 11 8 3.4828 4.7229 3.0944 12 6 3.5358 5.1069 4.4937 13 6 4.4410 6.3012 4.6529 14 6 3.9201 7.5790 4.5608 15 6 4.7460 8.6754 4.7119 16 6 6.1019 8.4939 4.9515 17 8 6.9163 9.5696 5.1000 18 6 6.3703 10.7844 4.8904 19 1 5.3115 10.8745 4.6978 20 6 7.1682 11.9180 4.9218 21 7 8.4579 11.8083 5.1567 22 14 6.4117 13.6010 4.6306 23 1 5.3754 13.8629 5.6615 24 1 7.4688 14.6404 4.7168 25 1 5.7896 13.6376 3.2827 26 6 6.6227 7.2094 5.0388 27 6 5.7916 6.1171 4.8867 28 8 1.6977 2.0967 1.2412 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.9927 0.5372 0.3494 35 1 3.9329 1.6330 -1.0656 36 1 4.5057 3.4176 0.2898 37 1 4.5687 2.3194 1.7043 38 1 3.9233 4.2764 5.0840 39 1 2.5337 5.3614 4.8388 40 1 2.8657 7.7196 4.3744 41 1 4.3380 9.6731 4.6435 42 1 9.0162 12.6013 5.1784 43 1 7.6768 7.0650 5.2246 44 1 6.1962 5.1179 4.9541 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000757116147.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:02 Heat of formation + Delta-G solvation = -141.618513 kcal Electronic energy + Delta-G solvation = -25749.465449 eV Core-core repulsion = 21825.541454 eV Total energy + Delta-G solvation = -3923.923995 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.81895 -39.51785 -39.00984 -36.97119 -36.00329 -34.02075 -32.57564 -32.42223 -30.70570 -30.26851 -29.15257 -26.18759 -25.23534 -24.38652 -22.29557 -22.08093 -21.39637 -21.00589 -20.58205 -18.10198 -17.76086 -17.26815 -17.00961 -16.76004 -16.34439 -15.61582 -15.01382 -14.64756 -14.55513 -14.19238 -14.05655 -13.97796 -13.73597 -13.63815 -13.50551 -13.03582 -12.95142 -12.78751 -12.29572 -12.14031 -12.11009 -11.84098 -11.73953 -11.41399 -11.33089 -11.16928 -11.02473 -11.01702 -10.84678 -10.73309 -10.53654 -10.45974 -10.42662 -10.07592 -9.43629 -8.92120 -8.29017 -7.35528 -6.54044 -4.12767 1.84634 2.12870 2.14227 2.62704 3.08749 3.09926 3.12638 3.66491 3.89739 4.09959 4.26715 4.44372 4.48568 4.63375 4.70913 4.78267 4.91019 4.94568 5.02148 5.12100 5.14003 5.18470 5.23273 5.28877 5.41770 5.43787 5.57573 5.59267 5.60846 5.63494 5.65321 5.74771 5.78442 5.98857 6.10994 6.31201 6.38749 6.47598 6.57477 6.78772 6.94794 7.12884 7.24941 7.33571 7.69377 7.77537 7.90546 8.91001 9.58621 10.63222 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.026982 B = 0.002032 C = 0.002017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.470018 B =13772.837941 C =13875.520111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.117 4.117 3 C 0.071 3.929 4 H 0.075 0.925 5 C -0.151 4.151 6 C -0.141 4.141 7 C 0.084 3.916 8 H 0.108 0.892 9 C 0.462 3.538 10 O -0.495 6.495 11 O -0.347 6.347 12 C 0.130 3.870 13 C -0.205 4.205 14 C -0.044 4.044 15 C -0.238 4.238 16 C 0.163 3.837 17 O -0.171 6.171 18 C -0.394 4.394 19 H 0.094 0.906 20 C 0.041 3.959 21 N -0.859 5.859 22 Si 0.943 3.057 23 H -0.269 1.269 24 H -0.277 1.277 25 H -0.269 1.269 26 C -0.196 4.196 27 C -0.048 4.048 28 O -0.342 6.342 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.053 0.947 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.095 0.905 37 H 0.082 0.918 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.109 0.891 41 H 0.130 0.870 42 H 0.272 0.728 43 H 0.120 0.880 44 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.691 -18.496 -11.051 24.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.154 4.154 3 C 0.013 3.987 4 H 0.093 0.907 5 C -0.188 4.188 6 C -0.178 4.178 7 C 0.025 3.975 8 H 0.125 0.875 9 C 0.304 3.696 10 O -0.382 6.382 11 O -0.264 6.264 12 C 0.058 3.942 13 C -0.206 4.206 14 C -0.062 4.062 15 C -0.257 4.257 16 C 0.108 3.892 17 O -0.074 6.074 18 C -0.470 4.470 19 H 0.111 0.889 20 C -0.164 4.164 21 N -0.493 5.493 22 Si 0.767 3.233 23 H -0.194 1.194 24 H -0.202 1.202 25 H -0.194 1.194 26 C -0.215 4.215 27 C -0.066 4.066 28 O -0.261 6.261 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.099 0.901 35 H 0.102 0.898 36 H 0.113 0.887 37 H 0.100 0.900 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.127 0.873 41 H 0.148 0.852 42 H 0.082 0.918 43 H 0.138 0.862 44 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -10.568 -18.511 -10.502 23.762 hybrid contribution -0.310 0.969 -0.134 1.026 sum -10.877 -17.542 -10.636 23.220 Atomic orbital electron populations 1.21739 0.95092 1.01682 1.02465 1.21592 0.96983 0.93961 1.02877 1.23177 0.93893 0.94492 0.87095 0.90724 1.23058 0.95743 0.99204 1.00833 1.22893 0.95837 0.98459 1.00651 1.22366 0.91731 0.92213 0.91209 0.87486 1.23097 0.76763 0.78582 0.91200 1.90670 1.42724 1.54632 1.50148 1.86629 1.62483 1.44917 1.32418 1.21746 0.99461 0.95535 0.77445 1.18854 0.94149 0.92511 1.15069 1.20625 0.98439 0.91566 0.95610 1.21140 0.93682 0.99351 1.11562 1.19441 0.89768 0.88588 0.91368 1.83975 1.36104 1.12639 1.74635 1.21325 0.94632 0.80331 1.50710 0.88907 1.25329 0.95308 0.99438 0.96372 1.70027 1.04265 1.30696 1.44264 0.85753 0.78531 0.79710 0.79308 1.19411 1.20197 1.19391 1.20193 0.99991 0.89880 1.11466 1.20505 0.92129 0.97414 0.96583 1.89259 1.54604 1.41719 1.40545 0.92676 0.91795 0.92813 0.90466 0.90909 0.90086 0.89825 0.88651 0.89974 0.91111 0.91107 0.87291 0.85247 0.91794 0.86189 0.86890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.83 37.16 0.37 -0.72 16 2 C -0.12 -0.80 5.57 -26.73 -0.15 -0.95 16 3 C 0.07 0.56 3.27 -25.96 -0.08 0.47 16 4 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 5 C -0.15 -1.01 6.64 -25.07 -0.17 -1.17 16 6 C -0.14 -1.19 6.63 -25.07 -0.17 -1.36 16 7 C 0.08 0.91 3.82 -27.11 -0.10 0.80 16 8 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 9 C 0.46 6.55 7.20 36.01 0.26 6.81 16 10 O -0.49 -8.48 16.30 -25.28 -0.41 -8.89 16 11 O -0.35 -5.14 10.20 -39.26 -0.40 -5.54 16 12 C 0.13 1.96 5.58 36.00 0.20 2.16 16 13 C -0.20 -3.53 5.52 -104.58 -0.58 -4.11 16 14 C -0.04 -0.80 9.69 -39.61 -0.38 -1.18 16 15 C -0.24 -5.04 9.17 -39.40 -0.36 -5.40 16 16 C 0.16 3.84 6.65 -39.11 -0.26 3.58 16 17 O -0.17 -4.76 9.76 0.06 0.00 -4.76 16 18 C -0.39 -10.73 9.49 30.89 0.29 -10.43 16 19 H 0.09 2.32 5.20 -52.49 -0.27 2.05 16 20 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 21 N -0.86 -24.59 13.67 55.48 0.76 -23.83 16 22 Si 0.94 19.99 29.55 -169.99 -5.02 14.96 16 23 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 24 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 25 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 26 C -0.20 -4.03 9.99 -39.40 -0.39 -4.42 16 27 C -0.05 -0.84 9.69 -39.61 -0.38 -1.23 16 28 O -0.34 -4.01 10.26 -54.49 -0.56 -4.57 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.57 7.91 -51.93 -0.41 0.16 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.08 0.51 7.87 -51.93 -0.41 0.11 16 35 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.08 0.76 7.86 -51.93 -0.41 0.35 16 38 H 0.07 1.00 8.08 -51.93 -0.42 0.58 16 39 H 0.07 1.02 8.08 -51.93 -0.42 0.60 16 40 H 0.11 1.70 8.06 -52.49 -0.42 1.27 16 41 H 0.13 2.72 5.64 -52.48 -0.30 2.42 16 42 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 43 H 0.12 2.36 8.06 -52.48 -0.42 1.93 16 44 H 0.11 1.66 8.06 -52.48 -0.42 1.23 16 LS Contribution 373.57 15.07 5.63 5.63 Total: -1.00 -32.02 373.57 -8.44 -40.45 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -6.42 Total: 2.68 kcal Atomic # 6 Polarization: -14.13 SS G_CDS: -2.01 Total: -16.14 kcal Atomic # 7 Polarization: -24.59 SS G_CDS: 0.76 Total: -23.83 kcal Atomic # 8 Polarization: -22.39 SS G_CDS: -1.37 Total: -23.76 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.96 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.02 -8.44 -40.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000757116147.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.168 kcal (2) G-P(sol) polarization free energy of solvation -32.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds