Wall clock time and date at job start Tue Mar 31 2020 12:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47062 * 2 1 4 4 H 1.09002 * 109.86948 * 54.55220 * 3 2 1 5 5 C 1.54095 * 110.00235 * 175.63505 * 3 2 1 6 6 C 1.54992 * 104.25053 * 121.65990 * 5 3 2 7 7 C 1.55000 * 102.01061 * 20.66841 * 6 5 3 8 8 H 1.09000 * 110.61646 * 81.75264 * 7 6 5 9 9 C 1.50692 * 110.61982 * 204.59461 * 7 6 5 10 10 O 1.20827 * 120.00103 * 112.82188 * 9 7 6 11 11 O 1.34231 * 120.00150 * 292.82125 * 9 7 6 12 12 C 1.45200 * 117.00155 * 179.97438 * 11 9 7 13 13 C 1.50699 * 109.46762 * 180.02562 * 12 11 9 14 14 C 1.38295 * 119.93712 * 90.00485 * 13 12 11 15 15 C 1.38104 * 120.07504 * 180.02562 * 14 13 12 16 16 C 1.38878 * 119.92725 * 359.96558 * 15 14 13 17 17 O 1.35751 * 120.07119 * 180.02562 * 16 15 14 18 18 C 1.34834 * 116.99516 * 354.46596 * 17 16 15 19 19 H 1.07993 * 120.00380 * 5.06010 * 18 17 16 20 20 C 1.38657 * 119.99722 * 185.05250 * 18 17 16 21 21 N 1.31554 * 119.99983 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 120.00036 * 0.02562 * 20 18 17 23 23 H 1.48505 * 109.47021 * 90.00032 * 22 20 18 24 24 H 1.48497 * 109.47048 * 209.99542 * 22 20 18 25 25 H 1.48498 * 109.47448 * 329.99686 * 22 20 18 26 26 C 1.38882 * 119.86309 * 0.28388 * 16 15 14 27 27 C 1.38101 * 119.93020 * 359.48809 * 26 16 15 28 28 O 1.43739 * 109.87884 * 293.54761 * 3 2 1 29 29 H 1.08998 * 109.47140 * 59.99986 * 1 2 3 30 30 H 1.08998 * 109.47067 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47137 * 299.99752 * 1 2 3 32 32 H 1.09001 * 109.47399 * 239.99917 * 2 1 3 33 33 H 1.08998 * 109.47140 * 120.00014 * 2 1 3 34 34 H 1.08997 * 110.49406 * 240.20026 * 5 3 2 35 35 H 1.08998 * 110.49001 * 2.72112 * 5 3 2 36 36 H 1.08997 * 110.84533 * 262.54381 * 6 5 3 37 37 H 1.09003 * 111.04655 * 138.88292 * 6 5 3 38 38 H 1.08995 * 109.47025 * 60.00014 * 12 11 9 39 39 H 1.09000 * 109.46850 * 299.99701 * 12 11 9 40 40 H 1.08005 * 119.96360 * 359.97438 * 14 13 12 41 41 H 1.07999 * 120.03898 * 179.97438 * 15 14 13 42 42 H 0.96999 * 120.00100 * 180.02562 * 21 20 18 43 43 H 1.07996 * 120.03406 * 179.72142 * 26 16 15 44 44 H 1.07995 * 119.96691 * 180.23189 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6030 1.9900 0.8351 5 6 3.5769 1.4582 0.1102 6 6 4.0427 2.2179 -1.1580 7 6 2.7642 3.0000 -1.5532 8 1 2.6742 3.9118 -0.9627 9 6 2.7726 3.3217 -3.0253 10 8 1.9656 2.8051 -3.7613 11 8 3.6768 4.1823 -3.5191 12 6 3.6264 4.4445 -4.9463 13 6 4.7086 5.4263 -5.3151 14 6 5.9620 4.9679 -5.6776 15 6 6.9560 5.8652 -6.0155 16 6 6.6956 7.2291 -5.9917 17 8 7.6704 8.1136 -6.3239 18 6 8.8998 7.6109 -6.5559 19 1 9.0553 6.5423 -6.5546 20 6 9.9643 8.4662 -6.7965 21 7 11.1638 7.9757 -7.0235 22 14 9.6954 10.3147 -6.7985 23 1 9.9007 10.8462 -5.4271 24 1 10.6616 10.9545 -7.7270 25 1 8.3102 10.6130 -7.2427 26 6 5.4374 7.6865 -5.6222 27 6 4.4463 6.7841 -5.2899 28 8 1.6938 2.0833 -1.2392 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.8897 1.9918 1.0077 35 1 3.9695 0.4414 0.1157 36 1 4.3303 1.5201 -1.9443 37 1 4.8605 2.9005 -0.9272 38 1 2.6533 4.8618 -5.2050 39 1 3.7794 3.5136 -5.4924 40 1 6.1640 3.9071 -5.6957 41 1 7.9347 5.5066 -6.2982 42 1 11.9086 8.5740 -7.1914 43 1 5.2332 8.7468 -5.5984 44 1 3.4666 7.1390 -5.0061 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000757116153.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:05 Heat of formation + Delta-G solvation = -155.908205 kcal Electronic energy + Delta-G solvation = -25806.972732 eV Core-core repulsion = 21882.429090 eV Total energy + Delta-G solvation = -3924.543642 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.85104 -40.96044 -40.28029 -38.64303 -37.36327 -34.62788 -34.50872 -33.26269 -32.30193 -31.87996 -29.98248 -27.95253 -26.52729 -25.31342 -23.77379 -23.06781 -22.25529 -21.91060 -21.86348 -19.87975 -19.18010 -18.84401 -18.03044 -17.80228 -17.18573 -16.74336 -16.56133 -16.28202 -15.83401 -15.68369 -15.45138 -14.95061 -14.76945 -14.50921 -14.45603 -14.38591 -14.19985 -14.09420 -13.85846 -13.73410 -13.13947 -12.99822 -12.77725 -12.66776 -12.52346 -12.45995 -12.33617 -12.02139 -11.96130 -11.75540 -11.74804 -11.54215 -11.40692 -11.31035 -10.92530 -10.75499 -9.87985 -9.16363 -8.51683 -6.25037 0.33321 0.51163 1.03566 1.32648 1.34704 1.47409 1.52968 2.27323 2.70384 2.90738 3.01404 3.11699 3.42193 3.56337 3.79998 3.85988 3.86682 3.87982 4.02897 4.09294 4.14581 4.26041 4.28193 4.37046 4.40144 4.51871 4.57262 4.70587 4.76681 4.88531 4.88857 4.89929 4.99844 5.08535 5.14658 5.16534 5.24519 5.26002 5.34395 5.42667 5.50349 5.63283 5.74895 5.79969 5.84491 6.14691 6.64983 6.82004 7.53404 8.59355 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.028220 B = 0.002100 C = 0.002036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.959482 B =13332.683712 C =13748.558915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C 0.066 3.934 4 H 0.089 0.911 5 C -0.143 4.143 6 C -0.140 4.140 7 C 0.084 3.916 8 H 0.133 0.867 9 C 0.465 3.535 10 O -0.528 6.528 11 O -0.349 6.349 12 C 0.128 3.872 13 C -0.173 4.173 14 C -0.046 4.046 15 C -0.239 4.239 16 C 0.133 3.867 17 O -0.239 6.239 18 C -0.402 4.402 19 H 0.084 0.916 20 C 0.011 3.989 21 N -0.919 5.919 22 Si 0.971 3.029 23 H -0.265 1.265 24 H -0.268 1.268 25 H -0.262 1.262 26 C -0.192 4.192 27 C -0.042 4.042 28 O -0.374 6.374 29 H 0.037 0.963 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.100 0.900 34 H 0.104 0.896 35 H 0.094 0.906 36 H 0.070 0.930 37 H 0.111 0.889 38 H 0.088 0.912 39 H 0.079 0.921 40 H 0.136 0.864 41 H 0.114 0.886 42 H 0.285 0.715 43 H 0.136 0.864 44 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.219 -11.957 16.503 27.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C 0.009 3.991 4 H 0.106 0.894 5 C -0.181 4.181 6 C -0.177 4.177 7 C 0.025 3.975 8 H 0.150 0.850 9 C 0.308 3.692 10 O -0.417 6.417 11 O -0.266 6.266 12 C 0.055 3.945 13 C -0.173 4.173 14 C -0.064 4.064 15 C -0.258 4.258 16 C 0.083 3.917 17 O -0.146 6.146 18 C -0.478 4.478 19 H 0.101 0.899 20 C -0.188 4.188 21 N -0.559 5.559 22 Si 0.793 3.207 23 H -0.190 1.190 24 H -0.193 1.193 25 H -0.186 1.186 26 C -0.211 4.211 27 C -0.060 4.060 28 O -0.294 6.294 29 H 0.057 0.943 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.118 0.882 34 H 0.123 0.877 35 H 0.112 0.888 36 H 0.089 0.911 37 H 0.129 0.871 38 H 0.106 0.894 39 H 0.097 0.903 40 H 0.154 0.846 41 H 0.132 0.868 42 H 0.095 0.905 43 H 0.154 0.846 44 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -18.419 -11.865 16.043 27.156 hybrid contribution 0.656 0.420 -0.647 1.013 sum -17.763 -11.445 15.396 26.145 Atomic orbital electron populations 1.21725 0.95618 1.01908 1.01616 1.21770 0.96655 0.94301 1.03216 1.23177 0.95462 0.94565 0.85890 0.89350 1.23079 0.93828 1.02891 0.98288 1.23138 0.96170 0.99546 0.98883 1.22715 0.89862 0.97060 0.87829 0.84958 1.23782 0.77675 0.75683 0.92015 1.90664 1.39147 1.50626 1.61291 1.86588 1.53478 1.58294 1.28194 1.21724 0.97960 0.98044 0.76747 1.19245 0.94930 0.93910 1.09258 1.20930 0.91431 0.99433 0.94652 1.21267 1.01132 0.93051 1.10380 1.19744 0.89592 0.89435 0.92898 1.83526 1.17905 1.35022 1.78122 1.20723 0.82386 0.94626 1.50041 0.89885 1.25297 0.93252 1.04859 0.95359 1.69723 1.00416 1.38219 1.47589 0.85216 0.78883 0.77592 0.79040 1.18969 1.19305 1.18594 1.20518 0.90900 1.01168 1.08540 1.20971 0.98775 0.91402 0.94817 1.88987 1.41586 1.56788 1.42070 0.94339 0.91976 0.91837 0.92431 0.88160 0.87717 0.88758 0.91123 0.87061 0.89385 0.90260 0.84612 0.86833 0.90484 0.84616 0.82632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.82 71.98 0.71 -1.30 16 2 C -0.12 -1.47 5.43 30.60 0.17 -1.30 16 3 C 0.07 0.86 3.41 30.97 0.11 0.97 16 4 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 5 C -0.14 -1.36 6.65 31.65 0.21 -1.15 16 6 C -0.14 -1.96 6.59 31.96 0.21 -1.75 16 7 C 0.08 1.56 3.87 30.53 0.12 1.68 16 8 H 0.13 1.81 8.14 -2.39 -0.02 1.79 16 9 C 0.47 11.83 7.33 71.23 0.52 12.36 16 10 O -0.53 -16.97 16.31 28.17 0.46 -16.52 16 11 O -0.35 -8.92 10.20 -51.42 -0.52 -9.44 16 12 C 0.13 3.26 5.59 71.24 0.40 3.66 16 13 C -0.17 -5.17 5.52 -19.83 -0.11 -5.28 16 14 C -0.05 -1.57 9.69 22.25 0.22 -1.35 16 15 C -0.24 -10.16 9.17 22.39 0.21 -9.96 16 16 C 0.13 6.01 6.65 22.58 0.15 6.16 16 17 O -0.24 -12.60 8.59 -22.79 -0.20 -12.80 16 18 C -0.40 -23.10 9.95 67.92 0.68 -22.43 16 19 H 0.08 5.00 5.44 -2.91 -0.02 4.98 16 20 C 0.01 0.64 5.49 84.83 0.47 1.11 16 21 N -0.92 -53.87 13.96 21.61 0.30 -53.57 16 22 Si 0.97 44.33 28.62 68.60 1.96 46.29 16 23 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 24 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 25 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 26 C -0.19 -6.98 9.99 22.39 0.22 -6.76 16 27 C -0.04 -1.23 9.69 22.25 0.22 -1.02 16 28 O -0.37 -7.99 10.09 -130.70 -1.32 -9.31 16 29 H 0.04 0.70 7.89 -2.39 -0.02 0.68 16 30 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.09 0.74 7.70 -2.39 -0.02 0.72 16 36 H 0.07 1.16 8.05 -2.39 -0.02 1.14 16 37 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.09 2.04 8.08 -2.39 -0.02 2.02 16 39 H 0.08 1.96 8.08 -2.39 -0.02 1.94 16 40 H 0.14 3.89 8.06 -2.91 -0.02 3.87 16 41 H 0.11 5.30 5.64 -2.91 -0.02 5.28 16 42 H 0.29 15.33 8.31 -92.71 -0.77 14.56 16 43 H 0.14 4.47 8.06 -2.91 -0.02 4.44 16 44 H 0.16 3.43 8.06 -2.91 -0.02 3.40 16 Total: -1.00 -70.39 372.42 6.16 -64.22 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: 1.00 Total: 17.49 kcal Atomic # 6 Polarization: -30.85 SS G_CDS: 4.48 Total: -26.37 kcal Atomic # 7 Polarization: -53.87 SS G_CDS: 0.30 Total: -53.57 kcal Atomic # 8 Polarization: -46.48 SS G_CDS: -1.58 Total: -48.06 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 1.96 Total: 46.29 kcal Total: -70.39 6.16 -64.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000757116153.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.684 kcal (2) G-P(sol) polarization free energy of solvation -70.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds