Wall clock time and date at job start Tue Mar 31 2020 12:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35665 * 116.99631 * 2 1 4 4 C 1.39085 * 119.88202 * 179.97438 * 3 2 1 5 5 C 1.37114 * 120.11552 * 180.02562 * 4 3 2 6 6 C 1.40041 * 119.88309 * 359.96799 * 5 4 3 7 7 C 1.46857 * 120.11332 * 180.02562 * 6 5 4 8 8 O 1.21292 * 120.00077 * 0.02562 * 7 6 5 9 9 C 1.50706 * 119.99670 * 180.02562 * 7 6 5 10 10 C 1.53002 * 109.46925 * 180.02562 * 9 7 6 11 11 C 1.53008 * 109.46800 * 299.99957 * 10 9 7 12 12 C 1.53005 * 109.47274 * 59.99521 * 10 9 7 13 13 C 1.52996 * 109.47340 * 180.02562 * 10 9 7 14 14 C 1.50699 * 109.47232 * 179.97438 * 13 10 9 15 15 O 1.21204 * 120.00044 * 359.97438 * 14 13 10 16 16 O 1.34312 * 119.99997 * 179.97438 * 14 13 10 17 17 C 1.34913 * 117.00083 * 180.02562 * 16 14 13 18 18 H 1.07994 * 120.00246 * 359.97438 * 17 16 14 19 19 C 1.38763 * 120.00126 * 180.02562 * 17 16 14 20 20 N 1.31437 * 120.00169 * 179.97438 * 19 17 16 21 21 Si 1.86795 * 119.99804 * 359.97438 * 19 17 16 22 22 H 1.48504 * 109.47131 * 90.00371 * 21 19 17 23 23 H 1.48499 * 109.46969 * 210.00286 * 21 19 17 24 24 H 1.48499 * 109.47326 * 330.00420 * 21 19 17 25 25 C 1.40043 * 119.77346 * 0.28608 * 6 5 4 26 26 C 1.37117 * 119.87858 * 359.46002 * 25 6 5 27 27 H 1.09002 * 109.46947 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47999 * 300.00560 * 1 2 3 29 29 H 1.09007 * 109.46983 * 60.00805 * 1 2 3 30 30 H 1.07997 * 119.93811 * 0.02562 * 4 3 2 31 31 H 1.07997 * 120.06048 * 179.97438 * 5 4 3 32 32 H 1.09000 * 109.47318 * 299.99428 * 9 7 6 33 33 H 1.09000 * 109.47161 * 60.00058 * 9 7 6 34 34 H 1.09002 * 109.47288 * 60.00162 * 11 10 9 35 35 H 1.09001 * 109.46630 * 179.97438 * 11 10 9 36 36 H 1.09000 * 109.47188 * 300.00076 * 11 10 9 37 37 H 1.08996 * 109.46524 * 60.00319 * 12 10 9 38 38 H 1.09001 * 109.46962 * 180.02562 * 12 10 9 39 39 H 1.08992 * 109.47199 * 300.00708 * 12 10 9 40 40 H 1.09004 * 109.46785 * 299.99692 * 13 10 9 41 41 H 1.09000 * 109.47196 * 59.99588 * 13 10 9 42 42 H 0.96993 * 120.00187 * 179.97438 * 20 19 17 43 43 H 1.08000 * 120.05842 * 179.70195 * 25 6 5 44 44 H 1.07998 * 119.94402 * 180.25965 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2088 0.0000 4 6 3.4339 1.2788 0.0005 5 6 4.0613 2.4980 0.0011 6 6 3.3009 3.6740 0.0004 7 6 3.9676 4.9825 0.0004 8 8 5.1788 5.0460 0.0005 9 6 3.1467 6.2464 0.0002 10 6 4.0787 7.4598 -0.0004 11 6 4.9617 7.4252 1.2487 12 6 4.9611 7.4245 -1.2498 13 6 3.2454 8.7430 0.0001 14 6 4.1634 9.9381 0.0002 15 8 5.3650 9.7793 0.0003 16 8 3.6500 11.1792 0.0000 17 6 4.5267 12.2047 -0.0005 18 1 5.5885 12.0074 -0.0003 19 6 4.0641 13.5130 -0.0001 20 7 4.9182 14.5120 -0.0001 21 14 2.2276 13.8542 0.0004 22 1 1.7413 13.9444 1.4007 23 1 1.9623 15.1368 -0.6993 24 1 1.5192 12.7527 -0.6996 25 6 1.9025 3.5980 0.0052 26 6 1.2850 2.3737 -0.0006 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3635 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 4.0193 0.3713 0.0005 31 1 5.1399 2.5514 0.0019 32 1 2.5180 6.2713 -0.8898 33 1 2.5178 6.2713 0.8902 34 1 5.5554 6.5111 1.2488 35 1 5.6259 8.2895 1.2480 36 1 4.3331 7.4503 2.1389 37 1 4.3320 7.4491 -2.1396 38 1 5.6254 8.2888 -1.2500 39 1 5.5547 6.5104 -1.2497 40 1 2.6161 8.7678 -0.8895 41 1 2.6171 8.7678 0.8905 42 1 4.5949 15.4265 -0.0002 43 1 1.3116 4.5020 0.0096 44 1 0.2067 2.3139 -0.0011 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000759823930.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:50 Heat of formation + Delta-G solvation = -147.723676 kcal Electronic energy + Delta-G solvation = -26376.758598 eV Core-core repulsion = 22452.569864 eV Total energy + Delta-G solvation = -3924.188735 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.73255 -41.19469 -40.47468 -38.40501 -37.81351 -36.30132 -34.45095 -32.60317 -31.64681 -30.15217 -29.16463 -28.12212 -27.90753 -27.13481 -24.43533 -23.47573 -22.31359 -20.89817 -20.14397 -19.53171 -19.21793 -18.45156 -17.62567 -17.18549 -16.88197 -16.74319 -16.70874 -16.10104 -16.03317 -15.73306 -15.32952 -15.12671 -15.03462 -14.68092 -14.45016 -14.24544 -13.82123 -13.73301 -13.60478 -13.49481 -13.49100 -12.81450 -12.78385 -12.65487 -12.31236 -12.27455 -12.11176 -11.94944 -11.93249 -11.82768 -11.80349 -11.73227 -11.53753 -10.77941 -10.69646 -10.21665 -10.11401 -9.25390 -8.50194 -6.36174 -0.24634 0.37749 1.36003 1.36227 1.50863 1.57552 1.67254 2.29444 2.30806 2.50379 2.82016 2.95910 3.14973 3.72799 3.81039 3.89419 3.93896 3.98871 4.17111 4.32737 4.34532 4.43286 4.43754 4.53584 4.64020 4.65027 4.69779 4.71682 4.77225 4.80723 4.88206 5.02363 5.02381 5.12988 5.14350 5.18451 5.25709 5.37520 5.48248 5.52845 5.58412 5.66407 5.71297 5.97163 6.35529 6.67163 6.75771 6.91369 7.70989 8.63328 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.027746 B = 0.002327 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.899644 B =12028.079027 C =12835.308320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.331 6.331 3 C 0.151 3.849 4 C -0.179 4.179 5 C -0.036 4.036 6 C -0.223 4.223 7 C 0.399 3.601 8 O -0.482 6.482 9 C -0.150 4.150 10 C -0.031 4.031 11 C -0.161 4.161 12 C -0.161 4.161 13 C -0.090 4.090 14 C 0.405 3.595 15 O -0.558 6.558 16 O -0.264 6.264 17 C -0.403 4.403 18 H 0.051 0.949 19 C 0.007 3.993 20 N -0.925 5.925 21 Si 0.989 3.011 22 H -0.260 1.260 23 H -0.270 1.270 24 H -0.245 1.245 25 C -0.022 4.022 26 C -0.221 4.221 27 H 0.117 0.883 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.140 0.860 31 H 0.129 0.871 32 H 0.134 0.866 33 H 0.134 0.866 34 H 0.065 0.935 35 H 0.041 0.959 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.041 0.959 39 H 0.065 0.935 40 H 0.126 0.874 41 H 0.127 0.873 42 H 0.287 0.713 43 H 0.169 0.831 44 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.016 -29.816 -0.003 34.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.244 6.244 3 C 0.105 3.895 4 C -0.198 4.198 5 C -0.054 4.054 6 C -0.224 4.224 7 C 0.280 3.720 8 O -0.361 6.361 9 C -0.187 4.187 10 C -0.031 4.031 11 C -0.218 4.218 12 C -0.218 4.218 13 C -0.127 4.127 14 C 0.253 3.747 15 O -0.453 6.453 16 O -0.174 6.174 17 C -0.479 4.479 18 H 0.069 0.931 19 C -0.191 4.191 20 N -0.565 5.565 21 Si 0.808 3.192 22 H -0.185 1.185 23 H -0.195 1.195 24 H -0.168 1.168 25 C -0.040 4.040 26 C -0.239 4.239 27 H 0.136 0.864 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.158 0.842 31 H 0.147 0.853 32 H 0.151 0.849 33 H 0.152 0.848 34 H 0.084 0.916 35 H 0.060 0.940 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.060 0.940 39 H 0.084 0.916 40 H 0.144 0.856 41 H 0.145 0.855 42 H 0.097 0.903 43 H 0.187 0.813 44 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -16.964 -29.808 -0.005 34.297 hybrid contribution 0.542 0.746 0.018 0.922 sum -16.421 -29.062 0.012 33.381 Atomic orbital electron populations 1.23453 0.75828 1.05875 1.02855 1.86027 1.24036 1.26894 1.87476 1.19593 0.92441 0.85161 0.92353 1.20403 0.92112 0.98801 1.08485 1.21154 1.00519 0.91188 0.92533 1.20487 0.95386 0.94132 1.12397 1.22608 0.88771 0.90552 0.70031 1.90463 1.18209 1.89542 1.37875 1.22160 0.98734 0.90146 1.07657 1.20056 0.94632 0.92325 0.96125 1.22228 1.00422 1.02567 0.96589 1.22222 1.00418 1.02559 0.96592 1.21524 0.96671 0.86983 1.07514 1.24610 0.89430 0.85175 0.75480 1.90517 1.19271 1.86242 1.49299 1.83540 1.40037 1.14930 1.78943 1.20256 0.89077 0.84539 1.54062 0.93059 1.25668 1.06160 0.92882 0.94409 1.69726 1.37734 1.00080 1.48972 0.85000 0.75911 0.78554 0.79737 1.18480 1.19472 1.16801 1.21496 0.92388 0.99187 0.90912 1.21445 1.01844 0.91397 1.09238 0.86431 0.91078 0.91076 0.84221 0.85286 0.84868 0.84833 0.91631 0.94006 0.92294 0.92320 0.94020 0.91623 0.85557 0.85469 0.90325 0.81323 0.81913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.06 9.80 113.37 1.11 1.17 16 2 O -0.33 -4.36 10.48 -89.82 -0.94 -5.30 16 3 C 0.15 2.18 6.70 22.68 0.15 2.33 16 4 C -0.18 -2.99 9.95 22.21 0.22 -2.77 16 5 C -0.04 -0.68 9.57 22.44 0.21 -0.46 16 6 C -0.22 -3.93 5.87 -20.15 -0.12 -4.04 16 7 C 0.40 8.60 6.52 27.95 0.18 8.78 16 8 O -0.48 -14.42 11.33 -3.07 -0.03 -14.46 16 9 C -0.15 -2.53 3.37 29.85 0.10 -2.43 16 10 C -0.03 -0.87 0.51 -52.18 -0.03 -0.90 16 11 C -0.16 -5.39 7.88 71.98 0.57 -4.82 16 12 C -0.16 -5.39 7.88 71.98 0.57 -4.82 16 13 C -0.09 -2.61 4.88 29.85 0.15 -2.47 16 14 C 0.41 18.79 7.32 71.24 0.52 19.31 16 15 O -0.56 -30.19 10.58 20.79 0.22 -29.97 16 16 O -0.26 -14.01 8.58 14.93 0.13 -13.88 16 17 C -0.40 -25.18 10.10 67.95 0.69 -24.50 16 18 H 0.05 3.68 7.09 -2.91 -0.02 3.66 16 19 C 0.01 0.44 5.49 84.88 0.47 0.91 16 20 N -0.92 -57.21 13.96 21.63 0.30 -56.91 16 21 Si 0.99 43.68 28.62 68.60 1.96 45.64 16 22 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 23 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 24 H -0.24 -10.11 7.11 99.48 0.71 -9.40 16 25 C -0.02 -0.24 9.44 22.44 0.21 -0.03 16 26 C -0.22 -2.29 8.99 22.21 0.20 -2.09 16 27 H 0.12 0.14 8.14 -2.39 -0.02 0.12 16 28 H 0.07 0.16 7.65 -2.39 -0.02 0.14 16 29 H 0.07 0.16 7.65 -2.38 -0.02 0.14 16 30 H 0.14 2.03 8.06 -2.91 -0.02 2.01 16 31 H 0.13 2.62 7.64 -2.91 -0.02 2.60 16 32 H 0.13 1.40 8.09 -2.39 -0.02 1.38 16 33 H 0.13 1.40 8.08 -2.39 -0.02 1.38 16 34 H 0.06 2.25 5.51 -2.39 -0.01 2.23 16 35 H 0.04 1.78 5.51 -2.39 -0.01 1.77 16 36 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.04 1.78 5.52 -2.39 -0.01 1.77 16 39 H 0.06 2.25 5.51 -2.39 -0.01 2.24 16 40 H 0.13 2.88 8.14 -2.38 -0.02 2.86 16 41 H 0.13 2.88 8.14 -2.39 -0.02 2.86 16 42 H 0.29 16.01 8.31 -92.71 -0.77 15.24 16 43 H 0.17 0.73 7.04 -2.91 -0.02 0.71 16 44 H 0.16 0.68 6.27 -2.91 -0.02 0.67 16 Total: -1.00 -84.55 357.76 7.86 -76.69 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: 1.02 Total: 15.03 kcal Atomic # 6 Polarization: -22.04 SS G_CDS: 5.20 Total: -16.84 kcal Atomic # 7 Polarization: -57.21 SS G_CDS: 0.30 Total: -56.91 kcal Atomic # 8 Polarization: -62.98 SS G_CDS: -0.63 Total: -63.61 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 1.96 Total: 45.64 kcal Total: -84.55 7.86 -76.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759823930.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.033 kcal (2) G-P(sol) polarization free energy of solvation -84.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds