Wall clock time and date at job start Tue Mar 31 2020 12:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47008 * 2 1 4 4 C 1.53005 * 109.47244 * 119.99846 * 2 1 3 5 5 C 1.50697 * 109.47117 * 175.00035 * 4 2 1 6 6 O 1.20762 * 120.00136 * 0.02562 * 5 4 2 7 7 C 1.50699 * 119.99607 * 179.97438 * 5 4 2 8 8 O 1.45208 * 109.46814 * 180.02562 * 7 5 4 9 9 C 1.34229 * 116.99784 * 180.02562 * 8 7 5 10 10 O 1.20830 * 119.99962 * 0.02562 * 9 8 7 11 11 C 1.50704 * 119.99937 * 179.97438 * 9 8 7 12 12 C 1.50699 * 109.47208 * 180.02562 * 11 9 8 13 13 C 1.38328 * 119.96230 * 269.97915 * 12 11 9 14 14 C 1.38281 * 120.13505 * 180.02562 * 13 12 11 15 15 C 1.38120 * 120.06679 * 359.68445 * 14 13 12 16 16 C 1.38852 * 119.93490 * 0.58817 * 15 14 13 17 17 O 1.35752 * 120.07221 * 179.70368 * 16 15 14 18 18 C 1.34829 * 116.99954 * 354.17311 * 17 16 15 19 19 H 1.07998 * 119.99999 * 5.03596 * 18 17 16 20 20 C 1.38656 * 119.99670 * 185.03445 * 18 17 16 21 21 N 1.31550 * 120.00275 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99668 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47063 * 60.00398 * 22 20 18 24 24 H 1.48498 * 109.47240 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47319 * 300.00306 * 22 20 18 26 26 C 1.38073 * 119.96534 * 89.99715 * 12 11 9 27 27 H 1.08997 * 109.47353 * 300.00009 * 1 2 3 28 28 H 1.08997 * 109.47066 * 60.00687 * 1 2 3 29 29 H 1.08998 * 109.46831 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47340 * 239.99519 * 2 1 3 31 31 H 1.09002 * 109.47044 * 299.99805 * 3 2 1 32 32 H 1.09002 * 109.47463 * 59.99595 * 3 2 1 33 33 H 1.08997 * 109.47203 * 179.97438 * 3 2 1 34 34 H 1.08994 * 109.46975 * 54.99700 * 4 2 1 35 35 H 1.09002 * 109.46535 * 295.00105 * 4 2 1 36 36 H 1.09002 * 109.47212 * 60.00362 * 7 5 4 37 37 H 1.08998 * 109.47607 * 300.00261 * 7 5 4 38 38 H 1.09002 * 109.46571 * 59.99926 * 11 9 8 39 39 H 1.08992 * 109.46782 * 300.00190 * 11 9 8 40 40 H 1.08001 * 119.93314 * 0.02562 * 13 12 11 41 41 H 1.07993 * 119.96315 * 179.97438 * 14 13 12 42 42 H 1.08001 * 120.03256 * 180.31909 * 15 14 13 43 43 H 0.96999 * 119.99936 * 179.97438 * 21 20 18 44 44 H 1.07996 * 120.03547 * 0.02562 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5419 -0.8294 1.1889 6 8 4.1425 -0.3759 0.2444 7 6 4.2944 -1.5023 2.3078 8 8 5.7170 -1.4784 2.0173 9 6 6.5331 -2.0423 2.9215 10 8 6.0741 -2.5398 3.9224 11 6 8.0219 -2.0559 2.6879 12 6 8.7053 -2.7427 3.8421 13 6 9.1175 -2.0065 4.9382 14 6 9.7454 -2.6330 5.9990 15 6 9.9570 -3.9976 5.9699 16 6 9.5494 -4.7386 4.8686 17 8 9.7613 -6.0790 4.8344 18 6 10.4787 -6.6113 5.8443 19 1 10.7863 -5.9913 6.6734 20 6 10.8215 -7.9545 5.8184 21 7 10.4472 -8.7096 4.8083 22 14 11.8161 -8.6918 7.2173 23 1 11.0689 -8.5367 8.4912 24 1 12.0495 -10.1341 6.9522 25 1 13.1210 -7.9904 7.3202 26 6 8.9195 -4.1062 3.8042 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 3.1300 1.4425 0.0005 34 1 1.6054 -1.7197 1.2952 35 1 1.7517 -0.1582 2.1370 36 1 3.9596 -2.5355 2.4010 37 1 4.1058 -0.9736 3.2421 38 1 8.3862 -1.0317 2.6067 39 1 8.2398 -2.5933 1.7651 40 1 8.9487 -0.9401 4.9655 41 1 10.0665 -2.0554 6.8531 42 1 10.4428 -4.4871 6.8010 43 1 10.6873 -9.6492 4.7900 44 1 8.5981 -4.6804 2.9479 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000760626710.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:59 Heat of formation + Delta-G solvation = -157.409763 kcal Electronic energy + Delta-G solvation = -25433.361298 eV Core-core repulsion = 21508.752543 eV Total energy + Delta-G solvation = -3924.608755 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.82315 -40.86488 -40.48138 -38.45543 -37.41628 -36.48061 -34.36246 -33.65795 -31.49480 -30.91130 -29.08230 -27.97677 -27.74037 -27.19356 -23.53816 -23.15192 -21.91647 -21.60156 -20.47623 -19.50915 -18.81266 -18.80835 -17.89946 -17.67085 -16.90580 -16.78642 -16.52508 -16.25207 -16.11077 -15.73304 -15.46066 -15.28791 -14.99557 -14.57270 -14.46465 -14.11835 -14.08348 -13.66568 -13.59086 -13.34280 -13.04240 -12.96408 -12.93037 -12.76289 -12.50605 -12.43763 -12.25378 -12.15001 -12.14277 -11.87009 -11.76818 -11.66892 -11.57736 -11.22489 -10.80181 -10.58553 -9.71319 -9.01278 -8.46944 -6.15724 0.40430 0.72393 0.85493 1.14212 1.34622 1.44393 1.51190 1.53592 2.17817 2.78483 2.94232 3.17184 3.38831 3.70492 3.75810 3.94156 3.97544 4.06732 4.08558 4.12297 4.18164 4.28196 4.36532 4.40611 4.53383 4.58913 4.69048 4.71801 4.72176 4.74874 4.85730 5.00700 5.04330 5.10513 5.11606 5.21801 5.29143 5.31981 5.43556 5.48225 5.61126 5.68970 5.71781 6.01806 6.19628 6.42761 6.69508 6.97341 7.78042 8.76164 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.025742 B = 0.002005 C = 0.001921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.476066 B =13965.031041 C =14574.280694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.091 4.091 3 C -0.155 4.155 4 C -0.156 4.156 5 C 0.362 3.638 6 O -0.463 6.463 7 C 0.000 4.000 8 O -0.350 6.350 9 C 0.468 3.532 10 O -0.527 6.527 11 C -0.063 4.063 12 C -0.037 4.037 13 C -0.176 4.176 14 C -0.072 4.072 15 C -0.241 4.241 16 C 0.111 3.889 17 O -0.233 6.233 18 C -0.415 4.415 19 H 0.102 0.898 20 C -0.024 4.024 21 N -0.921 5.921 22 Si 1.020 2.980 23 H -0.258 1.258 24 H -0.272 1.272 25 H -0.256 1.256 26 C -0.189 4.189 27 H 0.066 0.934 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.063 0.937 33 H 0.046 0.954 34 H 0.125 0.875 35 H 0.128 0.872 36 H 0.113 0.887 37 H 0.121 0.879 38 H 0.153 0.847 39 H 0.129 0.871 40 H 0.151 0.849 41 H 0.149 0.851 42 H 0.120 0.880 43 H 0.273 0.727 44 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.224 20.150 -5.350 26.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.109 4.109 3 C -0.213 4.213 4 C -0.192 4.192 5 C 0.238 3.762 6 O -0.337 6.337 7 C -0.074 4.074 8 O -0.267 6.267 9 C 0.312 3.688 10 O -0.416 6.416 11 C -0.100 4.100 12 C -0.037 4.037 13 C -0.194 4.194 14 C -0.090 4.090 15 C -0.260 4.260 16 C 0.061 3.939 17 O -0.140 6.140 18 C -0.491 4.491 19 H 0.119 0.881 20 C -0.222 4.222 21 N -0.559 5.559 22 Si 0.839 3.161 23 H -0.182 1.182 24 H -0.196 1.196 25 H -0.180 1.180 26 C -0.209 4.209 27 H 0.085 0.915 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.066 0.934 34 H 0.143 0.857 35 H 0.146 0.854 36 H 0.131 0.869 37 H 0.139 0.861 38 H 0.171 0.829 39 H 0.147 0.853 40 H 0.168 0.832 41 H 0.166 0.834 42 H 0.138 0.862 43 H 0.082 0.918 44 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -16.140 19.877 -5.805 26.254 hybrid contribution 0.417 -1.055 0.616 1.291 sum -15.723 18.821 -5.189 25.067 Atomic orbital electron populations 1.21817 0.93134 1.02567 1.02587 1.20958 0.96778 0.96229 0.96948 1.21962 1.01169 0.95951 1.02177 1.22216 0.89750 1.05357 1.01912 1.24926 0.92922 0.74246 0.84110 1.90418 1.72244 1.37700 1.33327 1.23828 0.77693 1.04800 1.01034 1.86582 1.19136 1.72569 1.48371 1.24031 0.90862 0.73680 0.80208 1.90723 1.78050 1.43218 1.29593 1.20375 0.85011 1.05941 0.98690 1.19090 0.97285 0.91434 0.95904 1.21008 1.03830 1.00679 0.93920 1.21151 0.96284 0.92660 0.98881 1.21344 1.09125 0.96040 0.99502 1.19857 0.94804 0.84319 0.94913 1.83938 1.65567 1.17276 1.47231 1.21793 1.32432 0.94665 1.00191 0.88086 1.26617 0.98682 0.95383 1.01469 1.70181 1.45896 1.07359 1.32512 0.84636 0.78097 0.77313 0.76081 1.18225 1.19612 1.18033 1.20226 1.07281 0.94896 0.98455 0.91473 0.92457 0.91793 0.92211 0.92588 0.91778 0.93446 0.85668 0.85407 0.86949 0.86118 0.82932 0.85278 0.83172 0.83364 0.86206 0.91850 0.87344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 9.19 71.98 0.66 -0.43 16 2 C -0.09 -1.03 2.57 -10.79 -0.03 -1.06 16 3 C -0.16 -2.05 8.93 71.98 0.64 -1.41 16 4 C -0.16 -1.37 5.11 29.85 0.15 -1.22 16 5 C 0.36 5.94 6.95 29.10 0.20 6.15 16 6 O -0.46 -11.17 14.11 17.39 0.25 -10.93 16 7 C 0.00 0.01 5.88 71.24 0.42 0.43 16 8 O -0.35 -8.58 9.76 -45.04 -0.44 -9.02 16 9 C 0.47 12.99 7.95 71.24 0.57 13.56 16 10 O -0.53 -18.36 15.78 21.95 0.35 -18.02 16 11 C -0.06 -1.56 5.94 29.10 0.17 -1.38 16 12 C -0.04 -1.26 4.37 -19.88 -0.09 -1.34 16 13 C -0.18 -5.52 9.70 22.30 0.22 -5.31 16 14 C -0.07 -2.50 10.04 22.25 0.22 -2.28 16 15 C -0.24 -10.76 9.17 22.39 0.21 -10.55 16 16 C 0.11 5.73 6.65 22.58 0.15 5.88 16 17 O -0.23 -14.43 9.76 -22.74 -0.22 -14.65 16 18 C -0.41 -24.64 9.49 67.92 0.64 -24.00 16 19 H 0.10 5.49 5.21 -2.91 -0.02 5.47 16 20 C -0.02 -1.40 5.49 84.83 0.47 -0.93 16 21 N -0.92 -57.43 13.67 21.61 0.30 -57.13 16 22 Si 1.02 43.39 29.55 68.60 2.03 45.42 16 23 H -0.26 -10.32 7.11 99.48 0.71 -9.62 16 24 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 25 H -0.26 -10.18 7.11 99.48 0.71 -9.48 16 26 C -0.19 -8.35 9.65 22.39 0.22 -8.14 16 27 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 28 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.06 0.89 7.96 -2.39 -0.02 0.88 16 31 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.05 0.86 5.96 -2.39 -0.01 0.84 16 34 H 0.13 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.13 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.11 1.84 8.13 -2.39 -0.02 1.82 16 37 H 0.12 1.73 8.13 -2.39 -0.02 1.71 16 38 H 0.15 2.55 8.09 -2.39 -0.02 2.53 16 39 H 0.13 2.82 8.08 -2.39 -0.02 2.80 16 40 H 0.15 3.45 8.06 -2.91 -0.02 3.42 16 41 H 0.15 3.97 8.06 -2.91 -0.02 3.95 16 42 H 0.12 5.39 5.64 -2.91 -0.02 5.38 16 43 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 44 H 0.11 4.78 8.06 -2.91 -0.02 4.76 16 Total: -1.00 -81.93 377.71 8.08 -73.85 By element: Atomic # 1 Polarization: 21.51 SS G_CDS: 1.00 Total: 22.51 kcal Atomic # 6 Polarization: -36.86 SS G_CDS: 4.82 Total: -32.04 kcal Atomic # 7 Polarization: -57.43 SS G_CDS: 0.30 Total: -57.13 kcal Atomic # 8 Polarization: -52.55 SS G_CDS: -0.07 Total: -52.62 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -81.93 8.08 -73.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760626710.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.558 kcal (2) G-P(sol) polarization free energy of solvation -81.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds