Wall clock time and date at job start Tue Mar 31 2020 12:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.62652 * 2 1 4 4 O 1.43753 * 109.63022 * 120.39460 * 2 1 3 5 5 C 1.44789 * 104.81431 * 144.19144 * 4 2 1 6 6 C 1.54918 * 101.71817 * 323.89438 * 5 4 2 7 7 H 1.09000 * 110.69311 * 276.99070 * 6 5 4 8 8 C 1.53001 * 110.69197 * 153.95799 * 6 5 4 9 9 O 1.45205 * 109.47265 * 174.99658 * 8 6 5 10 10 C 1.34222 * 117.00371 * 179.97438 * 9 8 6 11 11 O 1.20834 * 119.99915 * 0.02562 * 10 9 8 12 12 C 1.50699 * 120.00317 * 179.97438 * 10 9 8 13 13 C 1.50700 * 109.47295 * 180.02562 * 12 10 9 14 14 C 1.37636 * 120.12994 * 265.00155 * 13 12 10 15 15 C 1.38607 * 120.24715 * 179.97438 * 14 13 12 16 16 C 1.38658 * 120.50292 * 0.02562 * 15 14 13 17 17 C 1.37595 * 120.24904 * 0.02562 * 16 15 14 18 18 C 1.40699 * 120.12476 * 84.73092 * 13 12 10 19 19 C 1.41407 * 120.24414 * 359.97438 * 18 13 12 20 20 H 1.07997 * 119.99557 * 333.89512 * 19 18 13 21 21 C 1.39941 * 120.00024 * 153.90049 * 19 18 13 22 22 N 1.30823 * 120.00080 * 343.71060 * 21 19 18 23 23 Si 1.86801 * 119.99907 * 163.71048 * 21 19 18 24 24 H 1.48494 * 109.47172 * 90.00090 * 23 21 19 25 25 H 1.48502 * 109.46961 * 209.99988 * 23 21 19 26 26 H 1.48496 * 109.47237 * 329.99791 * 23 21 19 27 27 O 1.43367 * 109.62616 * 239.60842 * 2 1 3 28 28 H 1.09002 * 109.47126 * 60.69883 * 1 2 3 29 29 H 1.09006 * 109.47208 * 180.70024 * 1 2 3 30 30 H 1.08996 * 109.46850 * 300.69772 * 1 2 3 31 31 H 1.08993 * 109.47266 * 59.30415 * 3 2 1 32 32 H 1.09003 * 109.46573 * 179.30100 * 3 2 1 33 33 H 1.09005 * 109.46790 * 299.29842 * 3 2 1 34 34 H 1.08999 * 110.97947 * 81.99796 * 5 4 2 35 35 H 1.08995 * 110.97797 * 205.75357 * 5 4 2 36 36 H 1.09003 * 109.47408 * 294.99959 * 8 6 5 37 37 H 1.09000 * 109.47394 * 54.99986 * 8 6 5 38 38 H 1.08996 * 109.47208 * 300.00702 * 12 10 9 39 39 H 1.09000 * 109.46490 * 60.00704 * 12 10 9 40 40 H 1.07992 * 119.87496 * 0.02562 * 14 13 12 41 41 H 1.08003 * 119.75246 * 180.02562 * 15 14 13 42 42 H 1.07999 * 119.87817 * 180.02562 * 16 15 14 43 43 H 1.08004 * 120.12936 * 179.97438 * 17 16 15 44 44 H 0.97004 * 120.00107 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0439 1.4411 0.0000 4 8 2.0130 -0.6850 1.1679 5 6 3.2065 -1.3749 0.7254 6 6 2.8146 -1.7893 -0.7150 7 1 2.2328 -2.7110 -0.7058 8 6 4.0599 -1.9469 -1.5900 9 8 3.6731 -2.4487 -2.8965 10 6 4.6557 -2.6433 -3.7899 11 8 5.8013 -2.4028 -3.4901 12 6 4.3304 -3.1629 -5.1666 13 6 5.6002 -3.2917 -5.9679 14 6 5.9953 -2.2730 -6.8049 15 6 7.1630 -2.3887 -7.5427 16 6 7.9455 -3.5294 -7.4475 17 6 7.5695 -4.5607 -6.6179 18 6 6.3893 -4.4515 -5.8590 19 6 5.9966 -5.5019 -4.9976 20 1 5.3772 -5.2923 -4.1381 21 6 6.4107 -6.8128 -5.2588 22 7 6.8785 -7.1282 -6.4392 23 14 6.2956 -8.1126 -3.9221 24 1 4.9714 -8.7807 -3.9941 25 1 7.3694 -9.1196 -4.1170 26 1 6.4545 -7.4706 -2.5925 27 8 2.0116 -0.6832 -1.1648 28 1 -0.3633 0.5029 -0.8962 29 1 -0.3634 -1.0276 0.0126 30 1 -0.3633 0.5246 0.8836 31 1 1.6719 1.9595 0.8836 32 1 3.1339 1.4381 0.0125 33 1 1.6922 1.9522 -0.8963 34 1 4.0653 -0.7037 0.7182 35 1 3.4032 -2.2505 1.3440 36 1 4.5496 -0.9796 -1.7026 37 1 4.7477 -2.6498 -1.1199 38 1 3.8532 -4.1393 -5.0831 39 1 3.6539 -2.4694 -5.6661 40 1 5.3937 -1.3799 -6.8865 41 1 7.4657 -1.5843 -8.1967 42 1 8.8537 -3.6087 -8.0266 43 1 8.1802 -5.4485 -6.5456 44 1 7.1652 -8.0370 -6.6204 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000761108699.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:53 Heat of formation + Delta-G solvation = -180.270356 kcal Electronic energy + Delta-G solvation = -26861.526129 eV Core-core repulsion = 22935.926065 eV Total energy + Delta-G solvation = -3925.600064 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.87839 -41.30371 -39.42939 -37.51109 -36.10578 -35.53070 -34.39818 -33.57621 -31.40827 -31.19580 -28.94192 -28.40655 -27.18360 -26.57000 -23.23014 -22.86666 -22.66373 -22.17706 -21.06953 -19.09881 -18.85734 -18.47586 -17.79422 -17.39963 -17.30383 -16.97077 -16.27415 -16.18866 -15.67003 -15.51823 -15.32188 -15.04881 -14.56235 -14.38886 -14.14557 -13.96195 -13.64256 -13.52343 -13.45593 -13.34166 -13.11971 -13.08767 -12.92625 -12.79246 -12.74813 -12.68784 -12.55498 -12.45674 -12.13578 -11.73856 -11.40739 -11.35969 -11.25476 -11.24676 -11.03656 -10.72313 -9.25956 -9.23503 -8.62215 -6.33608 0.90487 1.08318 1.33775 1.36610 1.47512 1.53717 1.77550 2.19442 2.22568 2.76167 2.85429 3.36806 3.56341 3.72528 3.76262 3.89646 3.92460 4.05018 4.14904 4.21730 4.28775 4.34751 4.43710 4.56053 4.56419 4.65318 4.68825 4.70691 4.75282 4.76763 4.80277 4.90615 4.99454 5.12626 5.16704 5.21725 5.33780 5.40738 5.51049 5.73981 6.00537 6.04594 6.12347 6.19202 6.38111 6.69383 6.89326 6.95329 7.06666 8.34194 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.015195 B = 0.003208 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.287005 B = 8724.923297 C =10040.640938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.235 3.765 3 C -0.170 4.170 4 O -0.380 6.380 5 C 0.028 3.972 6 C 0.056 3.944 7 H 0.102 0.898 8 C 0.064 3.936 9 O -0.358 6.358 10 C 0.468 3.532 11 O -0.530 6.530 12 C -0.042 4.042 13 C -0.201 4.201 14 C -0.086 4.086 15 C -0.242 4.242 16 C -0.112 4.112 17 C -0.192 4.192 18 C 0.099 3.901 19 C -0.486 4.486 20 H 0.071 0.929 21 C 0.038 3.962 22 N -0.823 5.823 23 Si 0.971 3.029 24 H -0.256 1.256 25 H -0.267 1.267 26 H -0.264 1.264 27 O -0.387 6.387 28 H 0.083 0.917 29 H 0.062 0.938 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.057 0.943 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.140 0.860 36 H 0.073 0.927 37 H 0.094 0.906 38 H 0.108 0.892 39 H 0.122 0.878 40 H 0.118 0.882 41 H 0.117 0.883 42 H 0.108 0.892 43 H 0.099 0.901 44 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.603 9.783 12.899 19.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.159 3.841 3 C -0.227 4.227 4 O -0.301 6.301 5 C -0.048 4.048 6 C -0.001 4.001 7 H 0.120 0.880 8 C -0.010 4.010 9 O -0.275 6.275 10 C 0.312 3.688 11 O -0.418 6.418 12 C -0.079 4.079 13 C -0.203 4.203 14 C -0.104 4.104 15 C -0.261 4.261 16 C -0.131 4.131 17 C -0.211 4.211 18 C 0.096 3.904 19 C -0.515 4.515 20 H 0.089 0.911 21 C -0.177 4.177 22 N -0.449 5.449 23 Si 0.792 3.208 24 H -0.181 1.181 25 H -0.191 1.191 26 H -0.189 1.189 27 O -0.309 6.309 28 H 0.102 0.898 29 H 0.081 0.919 30 H 0.108 0.892 31 H 0.109 0.891 32 H 0.077 0.923 33 H 0.098 0.902 34 H 0.107 0.893 35 H 0.158 0.842 36 H 0.091 0.909 37 H 0.112 0.888 38 H 0.126 0.874 39 H 0.140 0.860 40 H 0.136 0.864 41 H 0.135 0.865 42 H 0.126 0.874 43 H 0.117 0.883 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -10.332 9.741 12.880 19.172 hybrid contribution 0.652 -0.762 0.256 1.035 sum -9.680 8.980 13.136 18.625 Atomic orbital electron populations 1.22083 0.90938 1.03664 1.04228 1.23775 0.95199 0.90945 0.74209 1.22388 1.01996 0.94070 1.04276 1.89246 1.41660 1.66724 1.32421 1.24432 0.88909 0.99094 0.92402 1.23766 0.91179 0.91989 0.93164 0.88012 1.23204 0.96506 1.00440 0.80888 1.86535 1.39744 1.77066 1.24146 1.24380 0.83049 0.73580 0.87755 1.90628 1.23235 1.48381 1.79544 1.19999 0.97604 1.03500 0.86776 1.19448 0.98240 0.98131 1.04460 1.20762 0.96492 0.96925 0.96202 1.20731 0.98919 0.99344 1.07105 1.20989 0.99081 0.94370 0.98628 1.21319 0.98416 0.98910 1.02467 1.17732 0.90062 0.91919 0.90643 1.19643 1.29782 0.92180 1.09938 0.91083 1.26673 0.92020 1.01601 0.97449 1.69870 1.31614 1.21637 1.21747 0.85366 0.79459 0.77252 0.78708 1.18078 1.19147 1.18856 1.88926 1.68424 1.42971 1.30614 0.89769 0.91919 0.89213 0.89078 0.92338 0.90225 0.89306 0.84245 0.90862 0.88836 0.87422 0.86012 0.86367 0.86457 0.87420 0.88274 0.90194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.44 9.24 71.98 0.67 -1.77 16 2 C 0.23 4.65 1.47 30.59 0.05 4.70 16 3 C -0.17 -2.78 9.20 71.98 0.66 -2.11 16 4 O -0.38 -7.62 11.01 -126.21 -1.39 -9.01 16 5 C 0.03 0.47 7.36 72.64 0.53 1.01 16 6 C 0.06 1.26 3.98 31.25 0.12 1.38 16 7 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 8 C 0.06 1.73 5.21 71.98 0.37 2.11 16 9 O -0.36 -12.17 10.22 -51.07 -0.52 -12.69 16 10 C 0.47 18.78 7.57 71.24 0.54 19.32 16 11 O -0.53 -24.76 15.78 21.94 0.35 -24.41 16 12 C -0.04 -1.65 5.29 29.10 0.15 -1.50 16 13 C -0.20 -9.59 4.43 -19.41 -0.09 -9.68 16 14 C -0.09 -3.80 9.66 22.22 0.21 -3.58 16 15 C -0.24 -10.76 10.05 22.46 0.23 -10.53 16 16 C -0.11 -5.41 10.02 22.22 0.22 -5.19 16 17 C -0.19 -10.40 8.69 22.73 0.20 -10.20 16 18 C 0.10 5.33 5.56 -21.29 -0.12 5.22 16 19 C -0.49 -25.89 8.14 23.46 0.19 -25.70 16 20 H 0.07 3.67 6.67 -2.91 -0.02 3.65 16 21 C 0.04 1.90 5.16 85.26 0.44 2.34 16 22 N -0.82 -42.95 10.96 21.83 0.24 -42.71 16 23 Si 0.97 38.27 29.59 68.60 2.03 40.30 16 24 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 25 H -0.27 -10.06 7.11 99.48 0.71 -9.36 16 26 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 27 O -0.39 -9.69 10.55 -125.91 -1.33 -11.02 16 28 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.06 1.06 8.14 -2.38 -0.02 1.05 16 30 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 34 H 0.09 1.34 8.04 -2.39 -0.02 1.33 16 35 H 0.14 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.07 2.03 8.13 -2.39 -0.02 2.01 16 37 H 0.09 2.39 8.13 -2.39 -0.02 2.37 16 38 H 0.11 4.26 7.08 -2.39 -0.02 4.24 16 39 H 0.12 3.94 8.05 -2.39 -0.02 3.92 16 40 H 0.12 4.40 8.06 -2.91 -0.02 4.37 16 41 H 0.12 4.43 8.06 -2.91 -0.02 4.40 16 42 H 0.11 4.58 8.06 -2.91 -0.02 4.55 16 43 H 0.10 5.62 6.21 -2.91 -0.02 5.60 16 44 H 0.29 13.59 8.30 -92.71 -0.77 12.82 16 Total: -1.00 -66.64 370.39 4.76 -61.89 By element: Atomic # 1 Polarization: 30.87 SS G_CDS: 0.99 Total: 31.87 kcal Atomic # 6 Polarization: -38.59 SS G_CDS: 4.39 Total: -34.20 kcal Atomic # 7 Polarization: -42.95 SS G_CDS: 0.24 Total: -42.71 kcal Atomic # 8 Polarization: -54.24 SS G_CDS: -2.89 Total: -57.14 kcal Atomic # 14 Polarization: 38.27 SS G_CDS: 2.03 Total: 40.30 kcal Total: -66.64 4.76 -61.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761108699.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.384 kcal (2) G-P(sol) polarization free energy of solvation -66.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds