Wall clock time and date at job start Tue Mar 31 2020 12:39:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47314 * 2 1 4 4 C 1.52995 * 109.47109 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.47059 * 180.02562 * 4 3 2 6 6 H 1.08993 * 109.47664 * 54.99591 * 5 4 3 7 7 O 1.45206 * 109.46722 * 294.99409 * 5 4 3 8 8 C 1.34803 * 116.99670 * 150.00286 * 7 5 4 9 9 O 1.21535 * 120.00426 * 0.02562 * 8 7 5 10 10 C 1.47289 * 119.99675 * 180.02562 * 8 7 5 11 11 C 1.39287 * 120.28911 * 357.17033 * 10 8 7 12 12 C 1.38209 * 120.08226 * 179.97438 * 11 10 8 13 13 C 1.38832 * 120.68414 * 0.02562 * 12 11 10 14 14 C 1.37593 * 120.58723 * 359.97438 * 13 12 11 15 15 C 1.40712 * 119.88508 * 359.74788 * 14 13 12 16 16 C 1.40865 * 120.33399 * 180.25148 * 15 14 13 17 17 H 1.07995 * 119.99691 * 214.92433 * 16 15 14 18 18 C 1.40293 * 119.99761 * 34.92406 * 16 15 14 19 19 N 1.30617 * 120.00300 * 9.91145 * 18 16 15 20 20 Si 1.86794 * 119.99927 * 189.91434 * 18 16 15 21 21 H 1.48505 * 109.47233 * 359.97438 * 20 18 16 22 22 H 1.48506 * 109.47291 * 119.99416 * 20 18 16 23 23 H 1.48502 * 109.47420 * 239.99725 * 20 18 16 24 24 C 1.50705 * 109.47056 * 175.00140 * 5 4 3 25 25 O 1.20819 * 119.99951 * 114.99687 * 24 5 4 26 26 O 1.34228 * 119.99858 * 294.99118 * 24 5 4 27 27 C 1.45194 * 117.00034 * 180.02562 * 26 24 5 28 28 H 1.08999 * 109.47053 * 300.00412 * 1 2 3 29 29 H 1.09003 * 109.47013 * 59.99525 * 1 2 3 30 30 H 1.08995 * 109.47494 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46777 * 240.00020 * 2 1 3 32 32 H 1.09003 * 109.46789 * 119.99971 * 2 1 3 33 33 H 1.09003 * 109.47469 * 300.00196 * 3 2 1 34 34 H 1.09004 * 109.46721 * 60.00008 * 3 2 1 35 35 H 1.09003 * 109.46925 * 299.99929 * 4 3 2 36 36 H 1.09000 * 109.47566 * 59.99965 * 4 3 2 37 37 H 1.07998 * 119.95783 * 359.97438 * 11 10 8 38 38 H 1.08002 * 119.65533 * 180.02562 * 12 11 10 39 39 H 1.08008 * 119.70744 * 179.97438 * 13 12 11 40 40 H 1.07998 * 120.06244 * 180.02562 * 14 13 12 41 41 H 0.96999 * 119.99994 * 180.02562 * 19 18 16 42 42 H 1.09005 * 109.47185 * 60.00238 * 27 26 24 43 43 H 1.08996 * 109.47409 * 180.02562 * 27 26 24 44 44 H 1.09002 * 109.47480 * 300.00702 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0801 2.8849 0.0013 6 1 3.6451 3.4238 0.8430 7 8 3.6965 3.5344 -1.2395 8 6 3.4866 4.8652 -1.1942 9 8 3.6208 5.4663 -0.1465 10 6 3.0944 5.5908 -2.4145 11 6 2.9960 4.9186 -3.6304 12 6 2.6272 5.6036 -4.7728 13 6 2.3515 6.9635 -4.7255 14 6 2.4400 7.6550 -3.5393 15 6 2.8077 6.9805 -2.3603 16 6 2.8961 7.6781 -1.1397 17 1 3.6491 7.4053 -0.4152 18 6 2.0060 8.7272 -0.8653 19 7 0.9789 8.9332 -1.6455 20 14 2.2898 9.8296 0.6157 21 1 3.5133 9.3895 1.3332 22 1 2.4594 11.2336 0.1625 23 1 1.1223 9.7419 1.5291 24 6 5.5820 2.8866 0.1257 25 8 6.2628 3.3020 -0.7818 26 8 6.1632 2.4268 1.2448 27 6 7.6139 2.4590 1.2953 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6768 1.9564 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 3.9329 0.9287 0.8909 36 1 3.9338 0.9284 -0.8891 37 1 3.2082 3.8609 -3.6807 38 1 2.5526 5.0755 -5.7119 39 1 2.0650 7.4832 -5.6279 40 1 2.2233 8.7126 -3.5121 41 1 0.3637 9.6588 -1.4559 42 1 7.9584 3.4876 1.1878 43 1 7.9532 2.0599 2.2511 44 1 8.0193 1.8536 0.4846 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000762785060.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:07 Heat of formation + Delta-G solvation = -171.209486 kcal Electronic energy + Delta-G solvation = -27336.288845 eV Core-core repulsion = 23411.081689 eV Total energy + Delta-G solvation = -3925.207156 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.63337 -39.29751 -37.46419 -36.34596 -36.13503 -34.99421 -33.76522 -31.88438 -30.08520 -29.61039 -28.33628 -26.61101 -25.54380 -23.03979 -22.82963 -21.20603 -21.02248 -20.56495 -19.72800 -17.77770 -17.47708 -17.06066 -16.64683 -16.13524 -15.66989 -15.42429 -15.20972 -14.53239 -14.30817 -13.98725 -13.72142 -13.60347 -13.27416 -13.07416 -13.03844 -12.76948 -12.59216 -12.20178 -12.05630 -11.76001 -11.64906 -11.27934 -11.23908 -11.20157 -11.14491 -10.88852 -10.77888 -10.73419 -10.67919 -10.65075 -10.52049 -10.23593 -9.79658 -9.72953 -9.36955 -8.83087 -7.67376 -7.44839 -6.92063 -4.52658 2.13155 2.28336 2.56032 2.76766 3.04700 3.14165 3.17059 3.47050 3.87551 3.89960 4.52508 4.57483 4.81799 4.91935 5.01844 5.06849 5.14091 5.19372 5.22256 5.35991 5.46300 5.52384 5.67694 5.69884 5.80287 5.83843 5.93468 6.05194 6.11959 6.13556 6.27140 6.33456 6.36488 6.39548 6.52506 6.89454 7.01546 7.10598 7.19065 7.42838 7.59510 7.81347 7.87067 7.92054 8.11563 8.54597 8.69273 8.76042 8.99610 10.03031 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.009627 B = 0.004361 C = 0.003956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2907.741284 B = 6418.739014 C = 7076.663278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.121 4.121 3 C -0.122 4.122 4 C -0.106 4.106 5 C 0.101 3.899 6 H 0.119 0.881 7 O -0.335 6.335 8 C 0.506 3.494 9 O -0.515 6.515 10 C -0.247 4.247 11 C -0.035 4.035 12 C -0.246 4.246 13 C -0.089 4.089 14 C -0.148 4.148 15 C 0.149 3.851 16 C -0.421 4.421 17 H 0.111 0.889 18 C 0.070 3.930 19 N -0.784 5.784 20 Si 0.916 3.084 21 H -0.256 1.256 22 H -0.271 1.271 23 H -0.272 1.272 24 C 0.447 3.553 25 O -0.487 6.487 26 O -0.359 6.359 27 C 0.035 3.965 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.051 0.949 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.076 0.924 34 H 0.066 0.934 35 H 0.090 0.910 36 H 0.078 0.922 37 H 0.103 0.897 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.118 0.882 41 H 0.284 0.716 42 H 0.063 0.937 43 H 0.100 0.900 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.802 -12.677 4.859 13.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C -0.160 4.160 4 C -0.143 4.143 5 C 0.044 3.956 6 H 0.137 0.863 7 O -0.253 6.253 8 C 0.358 3.642 9 O -0.405 6.405 10 C -0.250 4.250 11 C -0.053 4.053 12 C -0.265 4.265 13 C -0.108 4.108 14 C -0.167 4.167 15 C 0.146 3.854 16 C -0.449 4.449 17 H 0.128 0.872 18 C -0.149 4.149 19 N -0.409 5.409 20 Si 0.740 3.260 21 H -0.179 1.179 22 H -0.196 1.196 23 H -0.197 1.197 24 C 0.288 3.712 25 O -0.372 6.372 26 O -0.276 6.276 27 C -0.059 4.059 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.095 0.905 34 H 0.085 0.915 35 H 0.108 0.892 36 H 0.097 0.903 37 H 0.121 0.879 38 H 0.113 0.887 39 H 0.112 0.888 40 H 0.136 0.864 41 H 0.095 0.905 42 H 0.082 0.918 43 H 0.119 0.881 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.883 -12.232 4.890 13.485 hybrid contribution 0.272 0.633 0.610 0.920 sum 3.156 -11.599 5.500 13.219 Atomic orbital electron populations 1.21775 0.95816 1.01306 1.02203 1.21496 0.95990 0.96550 1.01843 1.21630 0.93542 0.97229 1.03582 1.21664 0.97315 0.91487 1.03873 1.21936 0.86615 0.96550 0.90535 0.86336 1.86807 1.79602 1.25145 1.33783 1.21525 0.74095 0.78610 0.90008 1.90713 1.50367 1.66836 1.32617 1.18674 1.23151 0.93383 0.89817 1.20839 0.94618 0.97690 0.92152 1.20364 1.14047 0.95052 0.97032 1.20860 0.98639 0.94285 0.97008 1.21280 1.04658 0.99660 0.91084 1.17457 0.86124 0.88420 0.93445 1.20395 1.12956 1.09549 1.01961 0.87179 1.26170 0.93998 0.96478 0.98277 1.69715 1.09309 1.26403 1.35456 0.86103 0.80009 0.79092 0.80755 1.17936 1.19637 1.19722 1.24273 0.92595 0.74255 0.80091 1.90698 1.65086 1.41674 1.39719 1.86481 1.23988 1.76615 1.40537 1.23249 0.76573 1.02913 1.03122 0.92711 0.92456 0.92997 0.91954 0.92146 0.90488 0.91518 0.89154 0.90294 0.87891 0.88718 0.88789 0.86381 0.90485 0.91832 0.88122 0.91974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.91 37.16 0.37 -1.08 16 2 C -0.12 -1.17 5.93 -26.73 -0.16 -1.33 16 3 C -0.12 -1.46 5.11 -26.73 -0.14 -1.60 16 4 C -0.11 -1.31 4.91 -26.73 -0.13 -1.44 16 5 C 0.10 1.70 2.47 -27.88 -0.07 1.63 16 6 H 0.12 2.02 7.16 -51.93 -0.37 1.65 16 7 O -0.33 -6.90 8.22 -47.46 -0.39 -7.29 16 8 C 0.51 12.36 7.82 34.41 0.27 12.63 16 9 O -0.51 -13.42 12.77 -19.29 -0.25 -13.67 16 10 C -0.25 -6.32 5.92 -104.39 -0.62 -6.94 16 11 C -0.03 -0.79 9.60 -39.20 -0.38 -1.17 16 12 C -0.25 -5.36 10.03 -39.37 -0.39 -5.76 16 13 C -0.09 -2.01 10.01 -39.60 -0.40 -2.41 16 14 C -0.15 -3.74 8.62 -38.88 -0.34 -4.07 16 15 C 0.15 4.03 5.49 -106.53 -0.59 3.44 16 16 C -0.42 -11.48 7.78 -37.82 -0.29 -11.77 16 17 H 0.11 3.12 5.72 -52.49 -0.30 2.82 16 18 C 0.07 1.77 5.24 -17.30 -0.09 1.68 16 19 N -0.78 -19.82 11.23 55.57 0.62 -19.20 16 20 Si 0.92 19.18 29.57 -169.99 -5.03 14.15 16 21 H -0.26 -5.48 7.11 56.52 0.40 -5.07 16 22 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 23 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 24 C 0.45 7.83 7.26 36.01 0.26 8.09 16 25 O -0.49 -10.16 16.26 -25.39 -0.41 -10.57 16 26 O -0.36 -5.15 10.53 -39.25 -0.41 -5.56 16 27 C 0.04 0.39 10.56 101.05 1.07 1.45 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.08 1.07 7.82 -51.93 -0.41 0.67 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.09 0.91 8.12 -51.93 -0.42 0.49 16 36 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.10 2.13 7.60 -52.49 -0.40 1.73 16 38 H 0.09 1.79 8.06 -52.49 -0.42 1.36 16 39 H 0.09 1.84 8.06 -52.48 -0.42 1.42 16 40 H 0.12 3.01 6.68 -52.49 -0.35 2.65 16 41 H 0.28 6.47 8.29 -40.82 -0.34 6.13 16 42 H 0.06 0.75 8.13 -51.93 -0.42 0.33 16 43 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 44 H 0.06 0.65 8.13 -51.93 -0.42 0.22 16 LS Contribution 375.50 15.07 5.66 5.66 Total: -1.00 -30.93 375.50 -8.28 -39.21 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -6.46 Total: 5.90 kcal Atomic # 6 Polarization: -7.01 SS G_CDS: -1.62 Total: -8.63 kcal Atomic # 7 Polarization: -19.82 SS G_CDS: 0.62 Total: -19.20 kcal Atomic # 8 Polarization: -35.63 SS G_CDS: -1.46 Total: -37.09 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -5.03 Total: 14.15 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -30.93 -8.28 -39.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762785060.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.999 kcal (2) G-P(sol) polarization free energy of solvation -30.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds