Wall clock time and date at job start Tue Mar 31 2020 12:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47022 * 2 1 4 4 C 1.53001 * 109.47249 * 180.02562 * 3 2 1 5 5 C 1.52995 * 109.47025 * 180.02562 * 4 3 2 6 6 H 1.09000 * 109.47052 * 304.99475 * 5 4 3 7 7 O 1.45192 * 109.47468 * 65.00068 * 5 4 3 8 8 C 1.34806 * 117.00124 * 210.00223 * 7 5 4 9 9 O 1.21532 * 120.00239 * 359.97438 * 8 7 5 10 10 C 1.47288 * 120.00130 * 179.97438 * 8 7 5 11 11 C 1.39295 * 120.28888 * 357.17143 * 10 8 7 12 12 C 1.38196 * 120.08867 * 179.97438 * 11 10 8 13 13 C 1.38840 * 120.68070 * 0.02562 * 12 11 10 14 14 C 1.37591 * 120.58647 * 359.97438 * 13 12 11 15 15 C 1.40716 * 119.88358 * 359.74175 * 14 13 12 16 16 C 1.40861 * 120.33056 * 180.26083 * 15 14 13 17 17 H 1.08009 * 119.99822 * 214.91992 * 16 15 14 18 18 C 1.40289 * 120.00344 * 34.91192 * 16 15 14 19 19 N 1.30622 * 119.99924 * 9.91942 * 18 16 15 20 20 Si 1.86797 * 120.00066 * 189.91505 * 18 16 15 21 21 H 1.48500 * 109.47505 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47366 * 120.00394 * 20 18 16 23 23 H 1.48508 * 109.47313 * 240.00170 * 20 18 16 24 24 C 1.50704 * 109.47031 * 185.00100 * 5 4 3 25 25 O 1.20828 * 119.99953 * 245.00230 * 24 5 4 26 26 O 1.34224 * 119.99989 * 64.99488 * 24 5 4 27 27 C 1.45200 * 116.99945 * 180.02562 * 26 24 5 28 28 H 1.09002 * 109.47273 * 59.99913 * 1 2 3 29 29 H 1.09004 * 109.46811 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46633 * 299.99267 * 1 2 3 31 31 H 1.09000 * 109.47110 * 240.00791 * 2 1 3 32 32 H 1.08992 * 109.47383 * 120.00013 * 2 1 3 33 33 H 1.08997 * 109.46885 * 60.00063 * 3 2 1 34 34 H 1.09002 * 109.47168 * 300.00151 * 3 2 1 35 35 H 1.08993 * 109.46902 * 59.99996 * 4 3 2 36 36 H 1.09002 * 109.46905 * 300.00000 * 4 3 2 37 37 H 1.07999 * 119.95345 * 0.02562 * 11 10 8 38 38 H 1.07999 * 119.66083 * 180.02562 * 12 11 10 39 39 H 1.08006 * 119.70418 * 179.97438 * 13 12 11 40 40 H 1.07999 * 120.06069 * 179.97438 * 14 13 12 41 41 H 0.97000 * 119.99716 * 179.97438 * 19 18 16 42 42 H 1.08998 * 109.47145 * 60.00353 * 27 26 24 43 43 H 1.09002 * 109.47611 * 180.02562 * 27 26 24 44 44 H 1.08998 * 109.47334 * 300.00024 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0799 2.8851 0.0000 6 1 3.6450 3.4246 -0.8414 7 8 3.6964 3.5335 1.2412 8 6 3.4862 4.8644 1.1969 9 8 3.6204 5.4663 0.1497 10 6 3.0940 5.5891 2.4177 11 6 2.8812 4.8970 3.6077 12 6 2.5138 5.5812 4.7509 13 6 2.3519 6.9600 4.7301 14 6 2.5548 7.6713 3.5699 15 6 2.9353 6.9999 2.3933 16 6 3.1509 7.7194 1.2017 17 1 2.8897 7.2796 0.2504 18 6 3.7047 9.0075 1.2504 19 7 4.1983 9.4642 2.3702 20 14 3.7363 10.0693 -0.2861 21 1 3.1196 9.3262 -1.4142 22 1 2.9720 11.3186 -0.0403 23 1 5.1420 10.4077 -0.6252 24 6 5.5818 2.8870 -0.1245 25 8 6.2627 3.3017 0.7834 26 8 6.1630 2.4280 -1.2439 27 6 7.6138 2.4594 -1.2939 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3632 0.5137 0.8900 31 1 1.8934 -0.5137 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6766 1.9564 -0.8900 35 1 3.9329 0.9289 -0.8908 36 1 3.9337 0.9286 0.8891 37 1 3.0044 3.8245 3.6372 38 1 2.3511 5.0378 5.6699 39 1 2.0639 7.4787 5.6326 40 1 2.4260 8.7436 3.5633 41 1 4.5815 10.3547 2.4038 42 1 8.0185 1.8526 -0.4839 43 1 7.9532 2.0619 -2.2504 44 1 7.9590 3.4875 -1.1851 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000762785064.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:11 Heat of formation + Delta-G solvation = -170.998100 kcal Electronic energy + Delta-G solvation = -27344.911414 eV Core-core repulsion = 23419.713425 eV Total energy + Delta-G solvation = -3925.197989 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.60787 -39.28663 -37.46087 -36.32596 -36.13407 -34.99955 -33.75983 -31.89289 -30.08380 -29.61021 -28.32298 -26.60595 -25.54177 -23.04654 -22.82369 -21.20191 -21.04675 -20.55353 -19.72138 -17.74291 -17.49015 -17.05092 -16.63105 -16.11187 -15.65944 -15.41717 -15.25225 -14.50214 -14.30546 -13.98228 -13.74698 -13.60958 -13.25636 -13.07531 -13.02670 -12.77159 -12.59350 -12.17341 -12.08813 -11.75723 -11.65646 -11.28541 -11.25562 -11.19475 -11.11705 -10.89375 -10.78181 -10.74447 -10.65842 -10.64863 -10.54651 -10.22380 -9.79953 -9.72744 -9.36259 -8.82375 -7.67094 -7.44405 -6.91273 -4.52092 2.14052 2.31942 2.57093 2.77331 3.04898 3.14105 3.17442 3.48483 3.86985 3.90117 4.52192 4.58237 4.81170 4.90042 5.01639 5.09970 5.15689 5.18615 5.20902 5.34196 5.49391 5.52403 5.65649 5.68013 5.77953 5.81353 5.91651 6.04843 6.10036 6.11925 6.24954 6.33478 6.35983 6.40254 6.52754 6.89702 7.01948 7.11119 7.19544 7.42992 7.59608 7.84353 7.87581 7.92366 8.11845 8.54622 8.69381 8.76161 8.99939 10.03888 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.010051 B = 0.004495 C = 0.003761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2785.136678 B = 6227.760167 C = 7442.222337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.122 4.122 4 C -0.106 4.106 5 C 0.102 3.898 6 H 0.118 0.882 7 O -0.335 6.335 8 C 0.506 3.494 9 O -0.515 6.515 10 C -0.247 4.247 11 C -0.035 4.035 12 C -0.246 4.246 13 C -0.089 4.089 14 C -0.148 4.148 15 C 0.149 3.851 16 C -0.420 4.420 17 H 0.111 0.889 18 C 0.069 3.931 19 N -0.783 5.783 20 Si 0.917 3.083 21 H -0.256 1.256 22 H -0.271 1.271 23 H -0.273 1.273 24 C 0.445 3.555 25 O -0.484 6.484 26 O -0.360 6.360 27 C 0.035 3.965 28 H 0.054 0.946 29 H 0.051 0.949 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.076 0.924 34 H 0.066 0.934 35 H 0.090 0.910 36 H 0.078 0.922 37 H 0.103 0.897 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.118 0.882 41 H 0.284 0.716 42 H 0.061 0.939 43 H 0.100 0.900 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.127 -13.290 -5.752 14.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C -0.159 4.159 4 C -0.144 4.144 5 C 0.044 3.956 6 H 0.136 0.864 7 O -0.254 6.254 8 C 0.357 3.643 9 O -0.406 6.406 10 C -0.250 4.250 11 C -0.053 4.053 12 C -0.265 4.265 13 C -0.108 4.108 14 C -0.167 4.167 15 C 0.145 3.855 16 C -0.448 4.448 17 H 0.129 0.871 18 C -0.150 4.150 19 N -0.408 5.408 20 Si 0.741 3.259 21 H -0.179 1.179 22 H -0.196 1.196 23 H -0.198 1.198 24 C 0.286 3.714 25 O -0.369 6.369 26 O -0.277 6.277 27 C -0.059 4.059 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.084 0.916 35 H 0.109 0.891 36 H 0.097 0.903 37 H 0.121 0.879 38 H 0.113 0.887 39 H 0.112 0.888 40 H 0.136 0.864 41 H 0.095 0.905 42 H 0.080 0.920 43 H 0.119 0.881 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.709 -12.789 -5.706 14.022 hybrid contribution 0.645 0.689 -0.525 1.080 sum -0.064 -12.100 -6.230 13.610 Atomic orbital electron populations 1.21774 0.95828 1.01332 1.02141 1.21500 0.95967 0.96571 1.01897 1.21627 0.93595 0.97222 1.03477 1.21664 0.97257 0.91543 1.03916 1.21916 0.86699 0.96486 0.90453 0.86419 1.86802 1.79589 1.25089 1.33882 1.21523 0.74107 0.78615 0.90027 1.90711 1.50859 1.66472 1.32522 1.18662 1.22027 0.93876 0.90447 1.20832 0.94574 0.97809 0.92096 1.20359 1.14563 0.94349 0.97256 1.20859 0.98961 0.94029 0.96955 1.21279 1.03372 0.99456 0.92572 1.17453 0.85974 0.88807 0.93271 1.20396 1.31284 0.97206 0.95899 0.87133 1.26186 0.93100 0.97819 0.97928 1.69721 1.25963 1.17642 1.27435 0.86094 0.78933 0.79150 0.81717 1.17880 1.19613 1.19781 1.24262 0.92603 0.74368 0.80154 1.90717 1.65042 1.41440 1.39691 1.86472 1.23987 1.76693 1.40538 1.23248 0.76571 1.02959 1.03080 0.92724 0.92987 0.92481 0.92123 0.91930 0.90538 0.91550 0.89134 0.90282 0.87901 0.88728 0.88797 0.86392 0.90474 0.91976 0.88137 0.91815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.91 37.16 0.37 -0.99 16 2 C -0.12 -1.12 5.93 -26.73 -0.16 -1.28 16 3 C -0.12 -1.39 5.11 -26.73 -0.14 -1.53 16 4 C -0.11 -1.29 4.91 -26.73 -0.13 -1.42 16 5 C 0.10 1.72 2.47 -27.88 -0.07 1.65 16 6 H 0.12 1.98 7.16 -51.93 -0.37 1.61 16 7 O -0.34 -6.91 8.22 -47.47 -0.39 -7.30 16 8 C 0.51 12.35 7.82 34.41 0.27 12.62 16 9 O -0.52 -13.43 12.77 -19.29 -0.25 -13.68 16 10 C -0.25 -6.32 5.92 -104.39 -0.62 -6.93 16 11 C -0.03 -0.79 9.60 -39.20 -0.38 -1.17 16 12 C -0.25 -5.37 10.03 -39.37 -0.39 -5.76 16 13 C -0.09 -2.01 10.01 -39.59 -0.40 -2.41 16 14 C -0.15 -3.74 8.62 -38.88 -0.34 -4.07 16 15 C 0.15 4.02 5.49 -106.53 -0.59 3.43 16 16 C -0.42 -11.48 7.78 -37.82 -0.29 -11.78 16 17 H 0.11 3.09 5.72 -52.48 -0.30 2.79 16 18 C 0.07 1.77 5.24 -17.30 -0.09 1.68 16 19 N -0.78 -20.17 11.23 55.57 0.62 -19.54 16 20 Si 0.92 19.33 29.57 -169.99 -5.03 14.30 16 21 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 22 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 23 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 24 C 0.45 8.00 7.26 36.01 0.26 8.26 16 25 O -0.48 -10.50 16.26 -25.40 -0.41 -10.91 16 26 O -0.36 -5.29 10.53 -39.24 -0.41 -5.70 16 27 C 0.04 0.41 10.56 101.05 1.07 1.47 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.08 1.01 7.82 -51.93 -0.41 0.60 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.09 0.90 8.12 -51.93 -0.42 0.48 16 36 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 37 H 0.10 2.11 7.60 -52.49 -0.40 1.71 16 38 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 39 H 0.09 1.84 8.06 -52.48 -0.42 1.42 16 40 H 0.12 3.01 6.68 -52.49 -0.35 2.65 16 41 H 0.28 6.60 8.29 -40.82 -0.34 6.26 16 42 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 43 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.06 0.80 8.13 -51.93 -0.42 0.37 16 LS Contribution 375.50 15.07 5.66 5.66 Total: -1.00 -31.41 375.50 -8.28 -39.69 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -6.46 Total: 5.72 kcal Atomic # 6 Polarization: -6.62 SS G_CDS: -1.62 Total: -8.24 kcal Atomic # 7 Polarization: -20.17 SS G_CDS: 0.62 Total: -19.54 kcal Atomic # 8 Polarization: -36.13 SS G_CDS: -1.46 Total: -37.59 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.03 Total: 14.30 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.41 -8.28 -39.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762785064.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.305 kcal (2) G-P(sol) polarization free energy of solvation -31.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds