Wall clock time and date at job start Tue Mar 31 2020 12:39:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47022 * 2 1 4 4 C 1.53001 * 109.47249 * 180.02562 * 3 2 1 5 5 C 1.52995 * 109.47025 * 180.02562 * 4 3 2 6 6 H 1.09000 * 109.47052 * 304.99475 * 5 4 3 7 7 O 1.45192 * 109.47468 * 65.00068 * 5 4 3 8 8 C 1.34806 * 117.00124 * 210.00223 * 7 5 4 9 9 O 1.21532 * 120.00239 * 359.97438 * 8 7 5 10 10 C 1.47288 * 120.00130 * 179.97438 * 8 7 5 11 11 C 1.39295 * 120.28888 * 357.17143 * 10 8 7 12 12 C 1.38196 * 120.08867 * 179.97438 * 11 10 8 13 13 C 1.38840 * 120.68070 * 0.02562 * 12 11 10 14 14 C 1.37591 * 120.58647 * 359.97438 * 13 12 11 15 15 C 1.40716 * 119.88358 * 359.74175 * 14 13 12 16 16 C 1.40861 * 120.33056 * 180.26083 * 15 14 13 17 17 H 1.08009 * 119.99822 * 214.91992 * 16 15 14 18 18 C 1.40289 * 120.00344 * 34.91192 * 16 15 14 19 19 N 1.30622 * 119.99924 * 9.91942 * 18 16 15 20 20 Si 1.86797 * 120.00066 * 189.91505 * 18 16 15 21 21 H 1.48500 * 109.47505 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47366 * 120.00394 * 20 18 16 23 23 H 1.48508 * 109.47313 * 240.00170 * 20 18 16 24 24 C 1.50704 * 109.47031 * 185.00100 * 5 4 3 25 25 O 1.20828 * 119.99953 * 245.00230 * 24 5 4 26 26 O 1.34224 * 119.99989 * 64.99488 * 24 5 4 27 27 C 1.45200 * 116.99945 * 180.02562 * 26 24 5 28 28 H 1.09002 * 109.47273 * 59.99913 * 1 2 3 29 29 H 1.09004 * 109.46811 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46633 * 299.99267 * 1 2 3 31 31 H 1.09000 * 109.47110 * 240.00791 * 2 1 3 32 32 H 1.08992 * 109.47383 * 120.00013 * 2 1 3 33 33 H 1.08997 * 109.46885 * 60.00063 * 3 2 1 34 34 H 1.09002 * 109.47168 * 300.00151 * 3 2 1 35 35 H 1.08993 * 109.46902 * 59.99996 * 4 3 2 36 36 H 1.09002 * 109.46905 * 300.00000 * 4 3 2 37 37 H 1.07999 * 119.95345 * 0.02562 * 11 10 8 38 38 H 1.07999 * 119.66083 * 180.02562 * 12 11 10 39 39 H 1.08006 * 119.70418 * 179.97438 * 13 12 11 40 40 H 1.07999 * 120.06069 * 179.97438 * 14 13 12 41 41 H 0.97000 * 119.99716 * 179.97438 * 19 18 16 42 42 H 1.08998 * 109.47145 * 60.00353 * 27 26 24 43 43 H 1.09002 * 109.47611 * 180.02562 * 27 26 24 44 44 H 1.08998 * 109.47334 * 300.00024 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0799 2.8851 0.0000 6 1 3.6450 3.4246 -0.8414 7 8 3.6964 3.5335 1.2412 8 6 3.4862 4.8644 1.1969 9 8 3.6204 5.4663 0.1497 10 6 3.0940 5.5891 2.4177 11 6 2.8812 4.8970 3.6077 12 6 2.5138 5.5812 4.7509 13 6 2.3519 6.9600 4.7301 14 6 2.5548 7.6713 3.5699 15 6 2.9353 6.9999 2.3933 16 6 3.1509 7.7194 1.2017 17 1 2.8897 7.2796 0.2504 18 6 3.7047 9.0075 1.2504 19 7 4.1983 9.4642 2.3702 20 14 3.7363 10.0693 -0.2861 21 1 3.1196 9.3262 -1.4142 22 1 2.9720 11.3186 -0.0403 23 1 5.1420 10.4077 -0.6252 24 6 5.5818 2.8870 -0.1245 25 8 6.2627 3.3017 0.7834 26 8 6.1630 2.4280 -1.2439 27 6 7.6138 2.4594 -1.2939 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3632 0.5137 0.8900 31 1 1.8934 -0.5137 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6766 1.9564 -0.8900 35 1 3.9329 0.9289 -0.8908 36 1 3.9337 0.9286 0.8891 37 1 3.0044 3.8245 3.6372 38 1 2.3511 5.0378 5.6699 39 1 2.0639 7.4787 5.6326 40 1 2.4260 8.7436 3.5633 41 1 4.5815 10.3547 2.4038 42 1 8.0185 1.8526 -0.4839 43 1 7.9532 2.0619 -2.2504 44 1 7.9590 3.4875 -1.1851 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000762785064.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:10 Heat of formation + Delta-G solvation = -186.157940 kcal Electronic energy + Delta-G solvation = -27345.568794 eV Core-core repulsion = 23419.713425 eV Total energy + Delta-G solvation = -3925.855369 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.08545 -40.95519 -39.20068 -37.83401 -37.46215 -36.35733 -35.62931 -33.05708 -31.92763 -31.43876 -29.36021 -27.82559 -27.30092 -24.72944 -23.93283 -23.02381 -22.06448 -21.91122 -21.41204 -19.44673 -19.10185 -18.69997 -18.08560 -17.44082 -17.33648 -17.06199 -16.40288 -16.07788 -15.99204 -15.36053 -15.19246 -14.91261 -14.59513 -14.48739 -14.34915 -14.16207 -14.04248 -13.63730 -13.41595 -13.17511 -12.96032 -12.91580 -12.73353 -12.63244 -12.48781 -12.40345 -12.18197 -12.08044 -12.01042 -11.93062 -11.81234 -11.56145 -11.39462 -11.24234 -11.18316 -10.71878 -9.54880 -9.34792 -8.78915 -6.50526 0.26620 0.89897 0.95735 1.23263 1.31226 1.45079 1.47234 1.92341 2.03623 2.16037 2.68270 3.39058 3.57639 3.66621 3.79025 4.02961 4.13357 4.23051 4.23290 4.25420 4.37109 4.38948 4.51457 4.58405 4.60713 4.75231 4.79494 4.80072 4.98944 5.03878 5.04676 5.10749 5.14195 5.15265 5.23143 5.31987 5.38125 5.44441 5.53502 5.56654 5.76370 5.96443 6.03077 6.25460 6.47515 6.59551 6.73911 6.83624 7.13392 8.19079 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.010051 B = 0.004495 C = 0.003761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2785.136678 B = 6227.760167 C = 7442.222337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.116 4.116 3 C -0.121 4.121 4 C -0.095 4.095 5 C 0.093 3.907 6 H 0.115 0.885 7 O -0.333 6.333 8 C 0.506 3.494 9 O -0.542 6.542 10 C -0.275 4.275 11 C -0.039 4.039 12 C -0.236 4.236 13 C -0.082 4.082 14 C -0.173 4.173 15 C 0.121 3.879 16 C -0.459 4.459 17 H 0.091 0.909 18 C 0.032 3.968 19 N -0.812 5.812 20 Si 0.982 3.018 21 H -0.265 1.265 22 H -0.249 1.249 23 H -0.267 1.267 24 C 0.447 3.553 25 O -0.530 6.530 26 O -0.350 6.350 27 C 0.026 3.974 28 H 0.053 0.947 29 H 0.066 0.934 30 H 0.046 0.954 31 H 0.078 0.922 32 H 0.067 0.933 33 H 0.053 0.947 34 H 0.065 0.935 35 H 0.122 0.878 36 H 0.084 0.916 37 H 0.125 0.875 38 H 0.135 0.865 39 H 0.129 0.871 40 H 0.107 0.893 41 H 0.294 0.706 42 H 0.068 0.932 43 H 0.145 0.855 44 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.178 -15.113 -5.873 16.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.154 4.154 3 C -0.158 4.158 4 C -0.132 4.132 5 C 0.036 3.964 6 H 0.133 0.867 7 O -0.251 6.251 8 C 0.358 3.642 9 O -0.435 6.435 10 C -0.278 4.278 11 C -0.057 4.057 12 C -0.255 4.255 13 C -0.100 4.100 14 C -0.192 4.192 15 C 0.118 3.882 16 C -0.487 4.487 17 H 0.109 0.891 18 C -0.184 4.184 19 N -0.437 5.437 20 Si 0.802 3.198 21 H -0.189 1.189 22 H -0.173 1.173 23 H -0.192 1.192 24 C 0.291 3.709 25 O -0.419 6.419 26 O -0.266 6.266 27 C -0.067 4.067 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.065 0.935 31 H 0.097 0.903 32 H 0.086 0.914 33 H 0.072 0.928 34 H 0.084 0.916 35 H 0.140 0.860 36 H 0.103 0.897 37 H 0.143 0.857 38 H 0.153 0.847 39 H 0.146 0.854 40 H 0.125 0.875 41 H 0.105 0.895 42 H 0.087 0.913 43 H 0.163 0.837 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -0.768 -14.647 -5.822 15.780 hybrid contribution 0.701 1.060 -0.451 1.348 sum -0.067 -13.587 -6.273 14.965 Atomic orbital electron populations 1.21790 0.95678 1.02130 1.01646 1.21472 0.96069 0.94828 1.03015 1.21620 0.93033 0.98801 1.02378 1.21762 0.97612 0.88227 1.05637 1.22435 0.86568 0.98735 0.88654 0.86722 1.86737 1.79233 1.23096 1.36022 1.21475 0.73536 0.79710 0.89454 1.90681 1.51929 1.67486 1.33384 1.19062 1.22551 0.94076 0.92114 1.21137 0.94019 0.99010 0.91554 1.20837 1.12156 0.94204 0.98274 1.21262 0.96996 0.94645 0.97125 1.21275 1.05235 0.99246 0.93426 1.17826 0.86450 0.89870 0.94063 1.20398 1.34001 0.98909 0.95412 0.89092 1.26915 0.92191 0.98322 1.00997 1.69734 1.26563 1.18458 1.28976 0.85163 0.79186 0.77881 0.77559 1.18898 1.17310 1.19192 1.24447 0.92900 0.73368 0.80229 1.90698 1.66043 1.43712 1.41414 1.86463 1.25979 1.75621 1.38583 1.23640 0.74477 1.02653 1.05892 0.92779 0.91529 0.93503 0.90328 0.91432 0.92844 0.91601 0.86027 0.89732 0.85673 0.84683 0.85358 0.87501 0.89537 0.91307 0.83664 0.93256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.49 9.91 71.98 0.71 -1.78 16 2 C -0.12 -1.88 5.93 30.60 0.18 -1.70 16 3 C -0.12 -2.62 5.11 30.60 0.16 -2.47 16 4 C -0.10 -2.16 4.91 30.59 0.15 -2.01 16 5 C 0.09 3.13 2.47 29.85 0.07 3.21 16 6 H 0.12 3.95 7.16 -2.39 -0.02 3.93 16 7 O -0.33 -14.00 8.22 -50.79 -0.42 -14.42 16 8 C 0.51 25.68 7.82 70.20 0.55 26.23 16 9 O -0.54 -29.75 12.77 19.73 0.25 -29.50 16 10 C -0.28 -14.46 5.92 -19.71 -0.12 -14.58 16 11 C -0.04 -1.76 9.60 22.51 0.22 -1.54 16 12 C -0.24 -9.74 10.03 22.40 0.22 -9.52 16 13 C -0.08 -3.58 10.01 22.26 0.22 -3.36 16 14 C -0.17 -8.92 8.62 22.72 0.20 -8.72 16 15 C 0.12 6.82 5.49 -21.10 -0.12 6.70 16 16 C -0.46 -26.43 7.78 23.41 0.18 -26.25 16 17 H 0.09 5.44 5.72 -2.91 -0.02 5.43 16 18 C 0.03 1.70 5.24 85.37 0.45 2.15 16 19 N -0.81 -43.04 11.23 21.88 0.25 -42.79 16 20 Si 0.98 40.77 29.57 68.60 2.03 42.80 16 21 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 22 H -0.25 -9.38 7.11 99.48 0.71 -8.68 16 23 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 24 C 0.45 16.05 7.26 71.24 0.52 16.57 16 25 O -0.53 -23.42 16.26 28.31 0.46 -22.96 16 26 O -0.35 -9.84 10.53 -51.36 -0.54 -10.38 16 27 C 0.03 0.56 10.56 113.37 1.20 1.76 16 28 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 30 H 0.05 0.83 8.14 -2.39 -0.02 0.82 16 31 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.05 1.40 7.82 -2.39 -0.02 1.39 16 34 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.12 2.05 8.12 -2.39 -0.02 2.03 16 36 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.13 4.97 7.60 -2.91 -0.02 4.95 16 38 H 0.14 4.49 8.06 -2.91 -0.02 4.47 16 39 H 0.13 4.66 8.06 -2.91 -0.02 4.64 16 40 H 0.11 5.64 6.68 -2.91 -0.02 5.62 16 41 H 0.29 13.89 8.29 -92.71 -0.77 13.12 16 42 H 0.07 1.40 8.13 -2.39 -0.02 1.38 16 43 H 0.15 1.80 8.14 -2.39 -0.02 1.78 16 44 H 0.05 1.21 8.13 -2.39 -0.02 1.19 16 Total: -1.00 -71.92 375.50 7.82 -64.10 By element: Atomic # 1 Polarization: 27.45 SS G_CDS: 1.00 Total: 28.45 kcal Atomic # 6 Polarization: -20.09 SS G_CDS: 4.79 Total: -15.29 kcal Atomic # 7 Polarization: -43.04 SS G_CDS: 0.25 Total: -42.79 kcal Atomic # 8 Polarization: -77.02 SS G_CDS: -0.25 Total: -77.27 kcal Atomic # 14 Polarization: 40.77 SS G_CDS: 2.03 Total: 42.80 kcal Total: -71.92 7.82 -64.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762785064.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.054 kcal (2) G-P(sol) polarization free energy of solvation -71.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds