Wall clock time and date at job start Tue Mar 31 2020 12:57:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47044 * 2 1 4 4 C 1.53001 * 109.47044 * 179.97438 * 3 2 1 5 5 O 1.45195 * 109.47243 * 180.02562 * 4 3 2 6 6 C 1.34223 * 117.00272 * 180.02562 * 5 4 3 7 7 O 1.20826 * 119.99837 * 359.97438 * 6 5 4 8 8 C 1.50696 * 120.00493 * 179.97438 * 6 5 4 9 9 O 1.45197 * 109.47668 * 179.97438 * 8 6 5 10 10 C 1.34224 * 117.00446 * 179.97438 * 9 8 6 11 11 O 1.20830 * 119.99648 * 0.02562 * 10 9 8 12 12 C 1.50696 * 120.00250 * 180.02562 * 10 9 8 13 13 C 1.50708 * 109.47368 * 180.02562 * 12 10 9 14 14 C 1.37631 * 120.12797 * 265.00428 * 13 12 10 15 15 C 1.38617 * 120.24935 * 179.97438 * 14 13 12 16 16 C 1.38659 * 120.49753 * 0.02562 * 15 14 13 17 17 C 1.37591 * 120.24814 * 0.02562 * 16 15 14 18 18 C 1.40703 * 120.12406 * 84.72361 * 13 12 10 19 19 C 1.41394 * 120.24704 * 0.02562 * 18 13 12 20 20 H 1.07999 * 119.99576 * 333.89506 * 19 18 13 21 21 C 1.39936 * 120.00084 * 153.89383 * 19 18 13 22 22 N 1.30823 * 120.00218 * 343.71483 * 21 19 18 23 23 Si 1.86806 * 120.00088 * 163.71714 * 21 19 18 24 24 H 1.48497 * 109.46918 * 60.00210 * 23 21 19 25 25 H 1.48502 * 109.47252 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.46900 * 300.00273 * 23 21 19 27 27 H 1.09000 * 109.47424 * 59.99964 * 1 2 3 28 28 H 1.08996 * 109.47496 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47485 * 299.99770 * 1 2 3 30 30 H 1.08997 * 109.46994 * 239.99970 * 2 1 3 31 31 H 1.09003 * 109.46708 * 119.99881 * 2 1 3 32 32 H 1.09004 * 109.46930 * 60.00326 * 3 2 1 33 33 H 1.09000 * 109.47039 * 300.00272 * 3 2 1 34 34 H 1.08997 * 109.46994 * 59.99970 * 4 3 2 35 35 H 1.09004 * 109.46620 * 300.00423 * 4 3 2 36 36 H 1.09003 * 109.46840 * 59.99807 * 8 6 5 37 37 H 1.09006 * 109.46868 * 300.00304 * 8 6 5 38 38 H 1.09000 * 109.47361 * 300.00222 * 12 10 9 39 39 H 1.08997 * 109.47049 * 60.00152 * 12 10 9 40 40 H 1.08005 * 119.87632 * 359.97438 * 14 13 12 41 41 H 1.07993 * 119.74862 * 180.02562 * 15 14 13 42 42 H 1.07998 * 119.87354 * 180.02562 * 16 15 14 43 43 H 1.08008 * 120.12341 * 179.97438 * 17 16 15 44 44 H 0.97001 * 120.00340 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 8 4.0540 2.8114 0.0013 6 6 5.3847 2.9873 0.0013 7 8 6.1207 2.0291 0.0014 8 6 5.9607 4.3798 0.0014 9 8 7.4107 4.3039 0.0021 10 6 8.0819 5.4663 0.0017 11 8 7.4777 6.5127 0.0012 12 6 9.5888 5.4663 0.0018 13 6 10.0913 6.8872 0.0019 14 6 10.4194 7.5040 -1.1839 15 6 10.8812 8.8109 -1.1868 16 6 11.0186 9.5113 0.0020 17 6 10.6975 8.9143 1.1993 18 6 10.2211 7.5902 1.2138 19 6 9.8819 6.9685 2.4376 20 1 9.1588 6.1665 2.4536 21 6 10.4833 7.3925 3.6279 22 7 11.5687 8.1216 3.5889 23 14 9.7360 6.9172 5.2727 24 1 9.7056 5.4374 5.3934 25 1 10.5564 7.4862 6.3721 26 1 8.3525 7.4496 5.3602 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6767 1.9563 0.8901 33 1 1.6766 1.9564 -0.8900 34 1 3.9337 0.9286 -0.8891 35 1 3.9329 0.9287 0.8909 36 1 5.6247 4.9120 0.8914 37 1 5.6248 4.9120 -0.8887 38 1 9.9522 4.9528 0.8919 39 1 9.9522 4.9521 -0.8880 40 1 10.3166 6.9677 -2.1158 41 1 11.1359 9.2872 -2.1220 42 1 11.3790 10.5293 -0.0120 43 1 10.8057 9.4616 2.1241 44 1 11.9854 8.4158 4.4140 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777162635.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:30 Heat of formation + Delta-G solvation = -171.359691 kcal Electronic energy + Delta-G solvation = -25796.201385 eV Core-core repulsion = 21870.987716 eV Total energy + Delta-G solvation = -3925.213669 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.75521 -39.88430 -37.71779 -37.05153 -35.84941 -35.34526 -33.68252 -31.93885 -30.43530 -29.53389 -28.95167 -26.90257 -25.09805 -24.11429 -21.73523 -21.58685 -21.00613 -20.86190 -19.45069 -17.87328 -17.26046 -17.22656 -17.04182 -16.77527 -16.26383 -15.53108 -15.33739 -15.10350 -14.52177 -14.16764 -14.11346 -13.68365 -13.60793 -13.57119 -12.82122 -12.62865 -12.57840 -12.29513 -12.18745 -11.83544 -11.72103 -11.60322 -11.51836 -11.27043 -11.21116 -11.13941 -11.03127 -10.76751 -10.76304 -10.56523 -10.55247 -10.44877 -9.90373 -9.55042 -9.44324 -9.20143 -7.40208 -7.37054 -6.78991 -4.41518 1.90908 2.00515 2.73841 2.80829 2.90633 3.04810 3.08164 3.24479 3.46776 3.90764 4.25892 4.43366 4.51754 4.61241 4.72354 4.81939 4.99092 5.01926 5.06167 5.07807 5.33462 5.33700 5.40504 5.47075 5.63463 5.71271 5.75360 5.83621 5.92429 5.98722 6.16847 6.23632 6.37725 6.45989 6.64607 6.80317 7.03061 7.23282 7.35451 7.55468 7.57794 7.84967 7.98984 8.07040 8.24244 8.30336 8.58446 8.84441 8.93982 10.14823 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.015189 B = 0.002589 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.972517 B =10811.207754 C =12151.747059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C -0.121 4.121 4 C 0.067 3.933 5 O -0.356 6.356 6 C 0.466 3.534 7 O -0.485 6.485 8 C 0.073 3.927 9 O -0.348 6.348 10 C 0.463 3.537 11 O -0.488 6.488 12 C -0.038 4.038 13 C -0.198 4.198 14 C -0.075 4.075 15 C -0.240 4.240 16 C -0.103 4.103 17 C -0.158 4.158 18 C 0.131 3.869 19 C -0.458 4.458 20 H 0.074 0.926 21 C 0.078 3.922 22 N -0.791 5.791 23 Si 0.904 3.096 24 H -0.264 1.264 25 H -0.277 1.277 26 H -0.264 1.264 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.113 0.887 37 H 0.111 0.889 38 H 0.111 0.889 39 H 0.092 0.908 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.118 0.882 44 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.059 -11.714 -4.450 19.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.158 4.158 4 C -0.007 4.007 5 O -0.273 6.273 6 C 0.307 3.693 7 O -0.370 6.370 8 C -0.002 4.002 9 O -0.267 6.267 10 C 0.305 3.695 11 O -0.372 6.372 12 C -0.075 4.075 13 C -0.199 4.199 14 C -0.094 4.094 15 C -0.259 4.259 16 C -0.122 4.122 17 C -0.177 4.177 18 C 0.128 3.872 19 C -0.488 4.488 20 H 0.092 0.908 21 C -0.140 4.140 22 N -0.416 5.416 23 Si 0.728 3.272 24 H -0.189 1.189 25 H -0.202 1.202 26 H -0.188 1.188 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.131 0.869 37 H 0.129 0.871 38 H 0.129 0.871 39 H 0.110 0.890 40 H 0.105 0.895 41 H 0.105 0.895 42 H 0.106 0.894 43 H 0.136 0.864 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -14.883 -11.609 -4.285 19.356 hybrid contribution -0.378 -0.185 0.799 0.903 sum -15.261 -11.794 -3.486 19.600 Atomic orbital electron populations 1.21749 0.95072 1.01921 1.02159 1.21440 0.96468 0.95473 1.02632 1.21632 0.92199 0.97985 1.04013 1.23152 0.94906 0.79667 1.02954 1.86436 1.23680 1.32818 1.84391 1.23126 0.80896 0.91945 0.73343 1.90709 1.60201 1.42628 1.43509 1.21963 0.80866 0.90994 1.06391 1.86596 1.17605 1.37030 1.85429 1.24751 0.92296 0.80455 0.71959 1.90665 1.69897 1.32625 1.44006 1.20009 0.84315 0.98523 1.04682 1.19039 1.13194 0.93444 0.94260 1.20331 0.98915 0.94730 0.95381 1.20321 1.13184 0.96063 0.96363 1.20708 1.00264 0.97759 0.93450 1.21304 1.04641 0.95245 0.96484 1.17351 0.87778 0.90782 0.91283 1.19458 1.21391 1.16910 0.90998 0.90834 1.25883 0.93434 0.93369 1.01333 1.69802 1.13978 1.27440 1.30366 0.86426 0.80277 0.79950 0.80514 1.18877 1.20228 1.18808 0.92496 0.92438 0.92481 0.91556 0.91530 0.90564 0.90597 0.90980 0.90944 0.86939 0.87121 0.87136 0.89016 0.89472 0.89470 0.89421 0.86389 0.90735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 9.91 37.16 0.37 -0.38 16 2 C -0.12 -0.69 5.93 -26.73 -0.16 -0.84 16 3 C -0.12 -0.83 5.59 -26.73 -0.15 -0.97 16 4 C 0.07 0.62 5.47 37.16 0.20 0.82 16 5 O -0.36 -4.13 10.22 -39.24 -0.40 -4.53 16 6 C 0.47 6.45 8.04 36.00 0.29 6.74 16 7 O -0.49 -8.12 16.25 -25.41 -0.41 -8.54 16 8 C 0.07 1.03 6.06 36.00 0.22 1.25 16 9 O -0.35 -6.11 9.75 -45.90 -0.45 -6.56 16 10 C 0.46 9.16 7.57 36.00 0.27 9.43 16 11 O -0.49 -10.91 15.78 -18.75 -0.30 -11.20 16 12 C -0.04 -0.76 5.29 -29.03 -0.15 -0.91 16 13 C -0.20 -4.66 4.43 -103.91 -0.46 -5.12 16 14 C -0.08 -1.69 9.66 -39.66 -0.38 -2.07 16 15 C -0.24 -5.43 10.05 -39.29 -0.39 -5.82 16 16 C -0.10 -2.45 10.02 -39.66 -0.40 -2.85 16 17 C -0.16 -4.10 8.68 -38.88 -0.34 -4.44 16 18 C 0.13 3.41 5.56 -106.82 -0.59 2.82 16 19 C -0.46 -11.85 8.14 -37.75 -0.31 -12.15 16 20 H 0.07 1.85 6.67 -52.49 -0.35 1.50 16 21 C 0.08 1.93 5.16 -17.35 -0.09 1.84 16 22 N -0.79 -20.05 10.95 55.55 0.61 -19.44 16 23 Si 0.90 18.64 29.59 -169.99 -5.03 13.61 16 24 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 25 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 26 H -0.26 -5.47 7.11 56.52 0.40 -5.06 16 27 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.65 8.13 -51.93 -0.42 0.22 16 35 H 0.07 0.67 8.13 -51.93 -0.42 0.25 16 36 H 0.11 1.47 8.13 -51.93 -0.42 1.05 16 37 H 0.11 1.35 8.13 -51.93 -0.42 0.93 16 38 H 0.11 2.19 7.08 -51.93 -0.37 1.82 16 39 H 0.09 1.54 8.05 -51.93 -0.42 1.12 16 40 H 0.09 1.70 8.06 -52.48 -0.42 1.28 16 41 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 42 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 43 H 0.12 3.16 6.20 -52.48 -0.33 2.83 16 44 H 0.28 6.53 8.30 -40.82 -0.34 6.19 16 LS Contribution 379.45 15.07 5.72 5.72 Total: -1.00 -30.43 379.45 -8.85 -39.28 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -6.51 Total: 4.33 kcal Atomic # 6 Polarization: -10.59 SS G_CDS: -2.08 Total: -12.67 kcal Atomic # 7 Polarization: -20.05 SS G_CDS: 0.61 Total: -19.44 kcal Atomic # 8 Polarization: -29.27 SS G_CDS: -1.56 Total: -30.83 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.03 Total: 13.61 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -30.43 -8.85 -39.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777162635.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.079 kcal (2) G-P(sol) polarization free energy of solvation -30.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds