Wall clock time and date at job start Tue Mar 31 2020 12:08:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.48195 * 2 1 4 4 C 1.53087 * 109.48386 * 239.96090 * 2 1 3 5 5 C 1.53182 * 109.16710 * 182.41025 * 4 2 1 6 6 H 1.09005 * 109.61425 * 297.07305 * 5 4 2 7 7 O 1.45197 * 109.54920 * 176.85061 * 5 4 2 8 8 C 1.34754 * 117.00319 * 150.44404 * 7 5 4 9 9 O 1.21517 * 119.99984 * 359.97438 * 8 7 5 10 10 C 1.47392 * 119.99873 * 180.02562 * 8 7 5 11 11 C 1.39723 * 120.20565 * 359.97438 * 10 8 7 12 12 C 1.37814 * 119.91543 * 179.97438 * 11 10 8 13 13 C 1.38583 * 120.32827 * 0.25064 * 12 11 10 14 14 C 1.38026 * 120.41533 * 359.48659 * 13 12 11 15 15 C 1.38835 * 120.07796 * 0.51495 * 14 13 12 16 16 O 1.35506 * 120.16338 * 179.72112 * 15 14 13 17 17 C 1.34813 * 117.00254 * 354.39769 * 16 15 14 18 18 H 1.07997 * 119.99601 * 5.06941 * 17 16 15 19 19 C 1.38705 * 119.99743 * 185.06310 * 17 16 15 20 20 N 1.31512 * 120.00349 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99757 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.46800 * 59.99950 * 21 19 17 23 23 H 1.48494 * 109.47177 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.46991 * 300.00242 * 21 19 17 25 25 C 1.53176 * 109.03406 * 56.97985 * 5 4 2 26 26 C 1.53096 * 109.16634 * 303.02316 * 25 5 4 27 27 O 1.42900 * 109.41116 * 57.60924 * 26 25 5 28 28 H 1.08996 * 109.47757 * 299.98145 * 1 2 3 29 29 H 1.09002 * 109.46849 * 59.98320 * 1 2 3 30 30 H 1.09000 * 109.47287 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46925 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.46999 * 300.01985 * 3 2 1 33 33 H 1.08999 * 109.47054 * 60.02231 * 3 2 1 34 34 H 1.09008 * 109.52199 * 62.50564 * 4 2 1 35 35 H 1.08994 * 109.52467 * 302.31967 * 4 2 1 36 36 H 1.07994 * 120.04467 * 359.95137 * 11 10 8 37 37 H 1.07992 * 119.83101 * 179.97438 * 12 11 10 38 38 H 1.08005 * 119.79305 * 179.74763 * 13 12 11 39 39 H 1.08005 * 119.96173 * 180.23122 * 14 13 12 40 40 H 0.96997 * 120.00307 * 180.02562 * 20 19 17 41 41 H 1.08997 * 109.52079 * 62.93097 * 25 5 4 42 42 H 1.09001 * 109.52450 * 183.11324 * 25 5 4 43 43 H 1.08997 * 109.47916 * 177.59109 * 26 25 5 44 44 H 1.09001 * 109.48135 * 297.62649 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 6 2.0406 -0.7225 -1.2494 5 6 3.5712 -0.7711 -1.2119 6 1 3.9703 0.2428 -1.2414 7 8 4.0616 -1.5196 -2.3554 8 6 5.2740 -1.1793 -2.8351 9 8 5.9040 -0.2812 -2.3124 10 6 5.8354 -1.8956 -3.9944 11 6 5.1144 -2.9285 -4.5991 12 6 5.6449 -3.5939 -5.6831 13 6 6.8934 -3.2474 -6.1745 14 6 7.6151 -2.2256 -5.5911 15 6 7.0971 -1.5439 -4.4982 16 8 7.8065 -0.5443 -3.9205 17 6 9.0569 -0.3367 -4.3797 18 1 9.4212 -0.8985 -5.2270 19 6 9.8754 0.5987 -3.7639 20 7 9.4319 1.2825 -2.7319 21 14 11.6077 0.8869 -4.4006 22 1 11.5468 1.3386 -5.8140 23 1 12.2714 1.9282 -3.5758 24 1 12.3822 -0.3774 -4.3179 25 6 4.0176 -1.4601 0.0812 26 6 3.4306 -0.7092 1.2793 27 8 2.0065 -0.6741 1.1665 28 1 -0.3634 0.5135 0.8901 29 1 -0.3633 0.5141 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1302 1.4422 -0.0005 32 1 1.6767 1.9564 -0.8898 33 1 1.6773 1.9562 0.8902 34 1 1.7149 -0.1846 -2.1398 35 1 1.6443 -1.7376 -1.2707 36 1 4.1429 -3.2053 -4.2172 37 1 5.0866 -4.3923 -6.1491 38 1 7.3026 -3.7773 -7.0220 39 1 8.5859 -1.9592 -5.9824 40 1 10.0041 1.9369 -2.3015 41 1 3.6613 -2.4902 0.0868 42 1 5.1058 -1.4499 0.1425 43 1 3.7098 -1.2201 2.2008 44 1 3.8191 0.3091 1.2959 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000785919166.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:51 Heat of formation + Delta-G solvation = -137.618132 kcal Electronic energy + Delta-G solvation = -27497.160660 eV Core-core repulsion = 23573.410135 eV Total energy + Delta-G solvation = -3923.750525 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.44301 -39.51996 -38.50787 -36.45113 -35.63615 -33.73838 -32.54407 -32.43985 -30.57340 -29.00023 -28.19819 -27.46953 -25.53181 -24.36104 -23.39073 -22.04426 -21.37750 -20.09835 -19.31797 -18.10051 -17.59041 -16.76338 -16.32005 -16.22317 -15.49356 -15.20728 -14.81433 -14.66140 -14.52057 -14.20702 -13.95693 -13.88170 -13.59961 -13.34191 -13.12986 -12.76008 -12.59478 -12.34175 -12.20160 -12.03886 -11.78595 -11.76839 -11.53847 -11.28785 -11.23661 -11.16497 -10.95647 -10.93799 -10.80200 -10.53324 -10.25543 -9.91567 -9.79593 -9.62634 -9.22834 -8.95619 -8.35609 -7.41166 -6.54015 -4.13963 1.57482 2.27876 3.06663 3.08942 3.11298 3.18243 3.42969 3.64828 3.86380 4.51055 4.59848 4.67258 4.74649 4.89013 4.98448 5.04296 5.10620 5.16681 5.19991 5.35922 5.43823 5.48742 5.53186 5.57246 5.63336 5.65329 5.68856 5.80812 5.83862 5.92405 5.94898 6.07019 6.09257 6.10412 6.15025 6.28550 6.54823 6.62666 6.86629 6.98911 7.09072 7.16977 7.20192 7.28209 7.62781 7.84337 8.70451 8.86125 9.55009 10.59584 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.014034 B = 0.003710 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.714763 B = 7545.014974 C = 9063.505624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.116 3.884 3 C -0.186 4.186 4 C -0.137 4.137 5 C 0.090 3.910 6 H 0.087 0.913 7 O -0.360 6.360 8 C 0.497 3.503 9 O -0.477 6.477 10 C -0.217 4.217 11 C -0.016 4.016 12 C -0.235 4.235 13 C -0.043 4.043 14 C -0.239 4.239 15 C 0.191 3.809 16 O -0.125 6.125 17 C -0.404 4.404 18 H 0.096 0.904 19 C 0.046 3.954 20 N -0.832 5.832 21 Si 0.942 3.058 22 H -0.268 1.268 23 H -0.276 1.276 24 H -0.268 1.268 25 C -0.172 4.172 26 C 0.064 3.936 27 O -0.374 6.374 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.124 0.876 37 H 0.112 0.888 38 H 0.113 0.887 39 H 0.134 0.866 40 H 0.273 0.727 41 H 0.079 0.921 42 H 0.083 0.917 43 H 0.098 0.902 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.851 -4.173 2.556 13.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.076 3.924 3 C -0.243 4.243 4 C -0.175 4.175 5 C 0.034 3.966 6 H 0.105 0.895 7 O -0.279 6.279 8 C 0.342 3.658 9 O -0.363 6.363 10 C -0.220 4.220 11 C -0.034 4.034 12 C -0.254 4.254 13 C -0.062 4.062 14 C -0.258 4.258 15 C 0.132 3.868 16 O -0.023 6.023 17 C -0.479 4.479 18 H 0.113 0.887 19 C -0.162 4.162 20 N -0.463 5.463 21 Si 0.766 3.234 22 H -0.193 1.193 23 H -0.201 1.201 24 H -0.193 1.193 25 C -0.210 4.210 26 C -0.013 4.013 27 O -0.294 6.294 28 H 0.083 0.917 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.099 0.901 35 H 0.100 0.900 36 H 0.142 0.858 37 H 0.130 0.870 38 H 0.131 0.869 39 H 0.152 0.848 40 H 0.083 0.917 41 H 0.097 0.903 42 H 0.101 0.899 43 H 0.116 0.884 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.736 -3.555 3.263 13.619 hybrid contribution 1.249 0.241 -0.571 1.395 sum -11.486 -3.314 2.692 12.254 Atomic orbital electron populations 1.21735 0.91972 1.02946 1.02573 1.21450 0.94973 0.91225 0.84734 1.22527 1.02606 0.96201 1.02985 1.22283 0.93734 1.02721 0.98781 1.22559 0.93562 0.96560 0.83877 0.89519 1.86579 1.35534 1.60059 1.45712 1.21128 0.78999 0.82215 0.83436 1.90984 1.58654 1.28714 1.57975 1.18039 0.96890 1.05629 1.01415 1.20964 0.97569 0.91687 0.93177 1.20542 0.98063 1.05174 1.01576 1.20970 0.93689 0.94493 0.97046 1.21115 1.03062 1.01464 1.00204 1.19234 0.90036 0.86987 0.90586 1.84140 1.25356 1.40172 1.52614 1.21490 0.87091 1.23755 1.15613 0.88699 1.25406 0.99953 0.95377 0.95510 1.70100 1.36758 1.21096 1.18373 0.85767 0.79950 0.78747 0.78918 1.19266 1.20085 1.19267 1.22622 1.02644 1.01171 0.94581 1.22552 0.80732 1.00064 0.97950 1.87942 1.21138 1.77319 1.42983 0.91661 0.90974 0.91677 0.91462 0.91178 0.91567 0.90103 0.89960 0.85799 0.86971 0.86943 0.84830 0.91676 0.90252 0.89870 0.88358 0.92392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 8.85 37.16 0.33 -0.89 16 2 C 0.12 1.33 1.11 -90.58 -0.10 1.23 16 3 C -0.19 -2.07 7.94 37.16 0.29 -1.78 16 4 C -0.14 -1.75 4.59 -26.59 -0.12 -1.87 16 5 C 0.09 1.45 2.23 -26.55 -0.06 1.39 16 6 H 0.09 1.55 5.65 -51.93 -0.29 1.26 16 7 O -0.36 -6.77 9.14 -40.64 -0.37 -7.14 16 8 C 0.50 11.33 7.87 34.46 0.27 11.60 16 9 O -0.48 -12.75 14.43 -26.60 -0.38 -13.13 16 10 C -0.22 -4.86 5.89 -104.83 -0.62 -5.47 16 11 C -0.02 -0.29 9.61 -39.18 -0.38 -0.66 16 12 C -0.23 -3.92 10.02 -39.61 -0.40 -4.31 16 13 C -0.04 -0.76 10.03 -39.53 -0.40 -1.16 16 14 C -0.24 -5.07 9.16 -39.44 -0.36 -5.43 16 15 C 0.19 4.72 6.66 -38.57 -0.26 4.46 16 16 O -0.12 -3.62 7.84 -21.01 -0.16 -3.78 16 17 C -0.40 -11.20 9.49 30.90 0.29 -10.91 16 18 H 0.10 2.37 5.21 -52.49 -0.27 2.10 16 19 C 0.05 1.25 5.49 -17.52 -0.10 1.15 16 20 N -0.83 -24.49 13.67 55.48 0.76 -23.74 16 21 Si 0.94 20.05 29.55 -169.99 -5.02 15.02 16 22 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 23 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 24 H -0.27 -5.50 7.11 56.52 0.40 -5.09 16 25 C -0.17 -2.54 5.78 -26.59 -0.15 -2.70 16 26 C 0.06 0.80 6.52 37.21 0.24 1.04 16 27 O -0.37 -4.83 10.24 -35.23 -0.36 -5.19 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.85 4.98 -51.93 -0.26 0.60 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.08 0.96 8.14 -51.92 -0.42 0.54 16 35 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.12 1.96 7.61 -52.49 -0.40 1.56 16 37 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 38 H 0.11 1.58 8.06 -52.48 -0.42 1.15 16 39 H 0.13 2.75 5.64 -52.48 -0.30 2.46 16 40 H 0.27 7.34 8.31 -40.82 -0.34 7.01 16 41 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 42 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 43 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.06 0.73 6.34 -51.93 -0.33 0.40 16 LS Contribution 358.68 15.07 5.41 5.41 Total: -1.00 -32.72 358.68 -7.71 -40.43 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -6.06 Total: 6.43 kcal Atomic # 6 Polarization: -12.80 SS G_CDS: -1.51 Total: -14.31 kcal Atomic # 7 Polarization: -24.49 SS G_CDS: 0.76 Total: -23.74 kcal Atomic # 8 Polarization: -27.96 SS G_CDS: -1.28 Total: -29.24 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.02 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.72 -7.71 -40.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785919166.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.189 kcal (2) G-P(sol) polarization free energy of solvation -32.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds