Wall clock time and date at job start Tue Mar 31 2020 13:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47370 * 2 1 4 4 H 1.09002 * 109.47280 * 55.00032 * 3 2 1 5 5 C 1.50701 * 109.47241 * 174.99801 * 3 2 1 6 6 H 1.08001 * 120.00132 * 119.99620 * 5 3 2 7 7 C 1.37878 * 120.00119 * 300.00548 * 5 3 2 8 8 N 1.31517 * 120.00242 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00084 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47271 * 59.99517 * 9 7 5 11 11 H 1.48496 * 109.47284 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47344 * 299.99782 * 9 7 5 13 13 O 1.45196 * 109.47355 * 294.99806 * 3 2 1 14 14 C 1.34748 * 116.99581 * 90.00051 * 13 3 2 15 15 O 1.21504 * 120.00464 * 0.02562 * 14 13 3 16 16 C 1.47479 * 119.99732 * 180.02562 * 14 13 3 17 17 C 1.39855 * 120.25272 * 179.97438 * 16 14 13 18 18 C 1.37370 * 119.95932 * 179.71583 * 17 16 14 19 19 C 1.39061 * 120.97545 * 0.38672 * 18 17 16 20 20 C 1.39982 * 119.09793 * 359.43378 * 19 18 17 21 21 O 1.36002 * 119.82922 * 180.36670 * 20 19 18 22 22 C 1.42898 * 117.00328 * 179.97438 * 21 20 19 23 23 C 1.37908 * 120.34217 * 0.37110 * 20 19 18 24 24 O 1.36078 * 111.17605 * 178.96165 * 19 18 17 25 25 C 1.43755 * 109.23511 * 19.40298 * 24 19 18 26 26 H 1.09001 * 110.74508 * 90.52935 * 25 24 19 27 27 C 1.53006 * 110.74803 * 213.69156 * 25 24 19 28 28 C 1.51681 * 132.00696 * 180.90975 * 18 17 16 29 29 H 1.08995 * 109.46649 * 300.00284 * 1 2 3 30 30 H 1.09004 * 109.46728 * 59.99852 * 1 2 3 31 31 H 1.08993 * 109.47216 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46996 * 239.99882 * 2 1 3 33 33 H 1.09000 * 109.47364 * 120.00511 * 2 1 3 34 34 H 0.96996 * 120.00341 * 179.97438 * 8 7 5 35 35 H 1.08003 * 120.01777 * 359.73427 * 17 16 14 36 36 H 1.09001 * 109.46509 * 60.00487 * 22 21 20 37 37 H 1.09001 * 109.47356 * 180.02562 * 22 21 20 38 38 H 1.08995 * 109.47110 * 300.00564 * 22 21 20 39 39 H 1.08002 * 119.93139 * 180.02562 * 23 20 19 40 40 H 1.09000 * 109.46889 * 58.54805 * 27 25 24 41 41 H 1.09003 * 109.46833 * 178.54899 * 27 25 24 42 42 H 1.08995 * 109.46821 * 298.54702 * 27 25 24 43 43 H 1.09000 * 110.94253 * 282.51983 * 28 18 17 44 44 H 1.09003 * 110.94134 * 46.20901 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5420 1.4442 0.1239 6 1 4.1474 1.8887 -0.6523 7 6 4.1434 0.8782 1.2280 8 7 3.4063 0.3372 2.1733 9 14 6.0050 0.8798 1.3812 10 1 6.5006 2.2796 1.3808 11 1 6.3979 0.2164 2.6503 12 1 6.5967 0.1450 0.2344 13 8 1.6561 2.0916 -1.2407 14 6 0.4684 2.7279 -1.2559 15 8 -0.2271 2.7403 -0.2597 16 6 0.0126 3.4093 -2.4819 17 6 -1.2194 4.0708 -2.5038 18 6 -1.6354 4.7085 -3.6473 19 6 -0.8515 4.7020 -4.7959 20 6 0.3835 4.0433 -4.7735 21 8 1.1654 4.0340 -5.8862 22 6 2.4138 3.3445 -5.7962 23 6 0.8113 3.4037 -3.6291 24 8 -1.4622 5.3708 -5.8115 25 6 -2.4731 6.2364 -5.2681 26 1 -2.0611 7.2216 -5.0495 27 6 -3.6620 6.3486 -6.2248 28 6 -2.8839 5.5084 -3.9664 29 1 -0.3632 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 3.8293 -0.0613 2.9499 35 1 -1.8432 4.0806 -1.6222 36 1 2.2335 2.2967 -5.5562 37 1 2.9371 3.4144 -6.7498 38 1 3.0231 3.7969 -5.0138 39 1 1.7655 2.8979 -3.6191 40 1 -4.0778 5.3573 -6.4054 41 1 -4.4257 6.9878 -5.7817 42 1 -3.3294 6.7806 -7.1685 43 1 -3.7348 4.8498 -4.1404 44 1 -3.1022 6.2231 -3.1728 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787090753.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:36 Heat of formation + Delta-G solvation = -136.431406 kcal Electronic energy + Delta-G solvation = -27219.899224 eV Core-core repulsion = 23296.200159 eV Total energy + Delta-G solvation = -3923.699065 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.43579 -39.65771 -39.05634 -36.79039 -35.58168 -33.53311 -33.14616 -31.55794 -31.11709 -29.88824 -27.61482 -27.39046 -26.47048 -24.20526 -22.98822 -21.94805 -21.58694 -20.79862 -19.54825 -18.04937 -17.71463 -17.11573 -16.72183 -16.41630 -15.92483 -15.47389 -15.38232 -15.19056 -14.92549 -14.53884 -13.80370 -13.61426 -13.38330 -13.24793 -13.02373 -12.85467 -12.72418 -12.46197 -12.33785 -12.09446 -11.66537 -11.55102 -11.49424 -11.34532 -11.27387 -11.21875 -11.12303 -10.97187 -10.72569 -10.67411 -10.31165 -9.82968 -9.68559 -9.39148 -8.83256 -8.66203 -8.47125 -7.95914 -6.20272 -4.27652 0.79199 1.25813 2.86468 3.04251 3.21725 3.24388 3.28147 3.29880 3.57040 3.86591 4.21003 4.27570 4.34310 4.64582 4.79579 4.86407 4.96629 5.11528 5.12828 5.21228 5.21952 5.26987 5.28040 5.33750 5.51617 5.53757 5.59419 5.75364 5.77888 6.01086 6.14994 6.23018 6.29150 6.37283 6.39790 6.47908 6.74216 6.86632 6.95920 7.15949 7.22383 7.35433 7.59114 7.71943 7.91612 8.13326 8.59943 8.85622 9.37436 10.86472 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.019036 B = 0.003243 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.578708 B = 8632.007763 C = 9554.248850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.136 4.136 3 C 0.222 3.778 4 H 0.048 0.952 5 C -0.522 4.522 6 H 0.068 0.932 7 C 0.064 3.936 8 N -0.887 5.887 9 Si 0.911 3.089 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.274 1.274 13 O -0.351 6.351 14 C 0.500 3.500 15 O -0.511 6.511 16 C -0.101 4.101 17 C -0.044 4.044 18 C -0.155 4.155 19 C 0.102 3.898 20 C 0.098 3.902 21 O -0.313 6.313 22 C 0.022 3.978 23 C -0.119 4.119 24 O -0.291 6.291 25 C 0.074 3.926 26 H 0.088 0.912 27 C -0.149 4.149 28 C -0.102 4.102 29 H 0.053 0.947 30 H 0.032 0.968 31 H 0.033 0.967 32 H 0.041 0.959 33 H 0.109 0.891 34 H 0.267 0.733 35 H 0.142 0.858 36 H 0.060 0.940 37 H 0.100 0.900 38 H 0.060 0.940 39 H 0.156 0.844 40 H 0.067 0.933 41 H 0.079 0.921 42 H 0.069 0.931 43 H 0.095 0.905 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.340 9.352 -15.054 20.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.174 4.174 3 C 0.170 3.830 4 H 0.066 0.934 5 C -0.560 4.560 6 H 0.086 0.914 7 C -0.139 4.139 8 N -0.525 5.525 9 Si 0.738 3.262 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.199 1.199 13 O -0.267 6.267 14 C 0.345 3.655 15 O -0.402 6.402 16 C -0.103 4.103 17 C -0.063 4.063 18 C -0.156 4.156 19 C 0.056 3.944 20 C 0.053 3.947 21 O -0.227 6.227 22 C -0.073 4.073 23 C -0.138 4.138 24 O -0.206 6.206 25 C 0.018 3.982 26 H 0.106 0.894 27 C -0.206 4.206 28 C -0.139 4.139 29 H 0.072 0.928 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.060 0.940 33 H 0.127 0.873 34 H 0.077 0.923 35 H 0.160 0.840 36 H 0.078 0.922 37 H 0.118 0.882 38 H 0.079 0.921 39 H 0.174 0.826 40 H 0.086 0.914 41 H 0.098 0.902 42 H 0.088 0.912 43 H 0.113 0.887 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -10.480 9.307 -14.980 20.514 hybrid contribution 1.054 -0.259 0.553 1.218 sum -9.426 9.048 -14.427 19.464 Atomic orbital electron populations 1.21866 0.98352 0.99054 1.00805 1.22023 0.92673 0.99285 1.03373 1.20706 0.95005 0.88769 0.78501 0.93393 1.20984 0.89590 1.39146 1.06301 0.91406 1.24878 0.99212 0.94747 0.95049 1.69877 1.35483 1.37673 1.09456 0.86344 0.83883 0.78486 0.77493 1.19993 1.21017 1.19947 1.86518 1.33537 1.62418 1.44268 1.20675 0.81087 0.76839 0.86940 1.90781 1.55558 1.58757 1.35075 1.19025 0.95852 1.02453 0.92935 1.20269 0.94577 0.94248 0.97200 1.20403 0.96718 1.04421 0.94013 1.18893 0.90986 0.96316 0.88163 1.17997 0.88909 1.00367 0.87438 1.86134 1.31004 1.72602 1.32984 1.23144 0.83411 0.96832 1.03876 1.21378 1.01630 0.99873 0.90878 1.86892 1.49380 1.54657 1.29623 1.23424 0.88308 0.93637 0.92837 0.89416 1.21881 0.95846 1.03353 0.99504 1.21878 0.95807 0.98535 0.97648 0.92765 0.94921 0.94785 0.93969 0.87293 0.92295 0.84026 0.92157 0.88159 0.92094 0.82603 0.91367 0.90240 0.91238 0.88691 0.88616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.16 8.57 37.16 0.32 -2.84 16 2 C -0.14 -3.35 5.49 -26.73 -0.15 -3.49 16 3 C 0.22 5.85 2.25 -27.88 -0.06 5.79 16 4 H 0.05 1.40 7.16 -51.93 -0.37 1.03 16 5 C -0.52 -14.38 8.90 -34.44 -0.31 -14.69 16 6 H 0.07 1.83 7.81 -52.49 -0.41 1.42 16 7 C 0.06 1.72 5.29 -17.82 -0.09 1.63 16 8 N -0.89 -24.80 11.29 55.43 0.63 -24.17 16 9 Si 0.91 20.78 29.54 -169.99 -5.02 15.75 16 10 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 12 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 13 O -0.35 -8.27 9.06 -40.62 -0.37 -8.64 16 14 C 0.50 10.71 6.34 34.50 0.22 10.93 16 15 O -0.51 -11.87 13.54 -19.27 -0.26 -12.13 16 16 C -0.10 -1.76 5.88 -104.95 -0.62 -2.38 16 17 C -0.04 -0.67 9.58 -39.29 -0.38 -1.05 16 18 C -0.15 -2.03 6.25 -104.15 -0.65 -2.68 16 19 C 0.10 1.48 6.98 -38.62 -0.27 1.21 16 20 C 0.10 1.48 6.70 -39.05 -0.26 1.22 16 21 O -0.31 -4.44 10.50 -19.76 -0.21 -4.64 16 22 C 0.02 0.24 9.81 101.05 0.99 1.23 16 23 C -0.12 -1.88 8.58 -39.12 -0.34 -2.22 16 24 O -0.29 -3.86 10.81 -20.01 -0.22 -4.08 16 25 C 0.07 0.67 4.26 -25.83 -0.11 0.56 16 26 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 27 C -0.15 -0.96 9.60 37.16 0.36 -0.60 16 28 C -0.10 -0.93 6.65 -26.51 -0.18 -1.11 16 29 H 0.05 1.24 7.79 -51.93 -0.40 0.84 16 30 H 0.03 0.70 6.06 -51.93 -0.31 0.38 16 31 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.04 1.01 8.14 -51.92 -0.42 0.58 16 33 H 0.11 2.91 5.95 -51.93 -0.31 2.60 16 34 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 35 H 0.14 2.04 7.66 -52.48 -0.40 1.63 16 36 H 0.06 0.62 7.65 -51.93 -0.40 0.22 16 37 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.06 0.63 7.65 -51.93 -0.40 0.24 16 39 H 0.16 2.39 5.79 -52.49 -0.30 2.08 16 40 H 0.07 0.46 8.11 -51.93 -0.42 0.04 16 41 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.09 0.76 7.90 -51.93 -0.41 0.35 16 44 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 362.00 15.07 5.46 5.46 Total: -1.00 -31.49 362.00 -7.75 -39.24 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -6.24 Total: 1.71 kcal Atomic # 6 Polarization: -6.98 SS G_CDS: -1.52 Total: -8.50 kcal Atomic # 7 Polarization: -24.80 SS G_CDS: 0.63 Total: -24.17 kcal Atomic # 8 Polarization: -28.44 SS G_CDS: -1.05 Total: -29.49 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.49 -7.75 -39.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787090753.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.187 kcal (2) G-P(sol) polarization free energy of solvation -31.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds