Wall clock time and date at job start Tue Mar 31 2020 13:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47370 * 2 1 4 4 H 1.09002 * 109.47280 * 55.00032 * 3 2 1 5 5 C 1.50701 * 109.47241 * 174.99801 * 3 2 1 6 6 H 1.08001 * 120.00132 * 119.99620 * 5 3 2 7 7 C 1.37878 * 120.00119 * 300.00548 * 5 3 2 8 8 N 1.31517 * 120.00242 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00084 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47271 * 59.99517 * 9 7 5 11 11 H 1.48496 * 109.47284 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47344 * 299.99782 * 9 7 5 13 13 O 1.45196 * 109.47355 * 294.99806 * 3 2 1 14 14 C 1.34748 * 116.99581 * 90.00051 * 13 3 2 15 15 O 1.21504 * 120.00464 * 0.02562 * 14 13 3 16 16 C 1.47479 * 119.99732 * 180.02562 * 14 13 3 17 17 C 1.39855 * 120.25272 * 179.97438 * 16 14 13 18 18 C 1.37370 * 119.95932 * 179.71583 * 17 16 14 19 19 C 1.39061 * 120.97545 * 0.38672 * 18 17 16 20 20 C 1.39982 * 119.09793 * 359.43378 * 19 18 17 21 21 O 1.36002 * 119.82922 * 180.36670 * 20 19 18 22 22 C 1.42898 * 117.00328 * 179.97438 * 21 20 19 23 23 C 1.37908 * 120.34217 * 0.37110 * 20 19 18 24 24 O 1.36078 * 111.17605 * 178.96165 * 19 18 17 25 25 C 1.43755 * 109.23511 * 19.40298 * 24 19 18 26 26 H 1.09001 * 110.74508 * 90.52935 * 25 24 19 27 27 C 1.53006 * 110.74803 * 213.69156 * 25 24 19 28 28 C 1.51681 * 132.00696 * 180.90975 * 18 17 16 29 29 H 1.08995 * 109.46649 * 300.00284 * 1 2 3 30 30 H 1.09004 * 109.46728 * 59.99852 * 1 2 3 31 31 H 1.08993 * 109.47216 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46996 * 239.99882 * 2 1 3 33 33 H 1.09000 * 109.47364 * 120.00511 * 2 1 3 34 34 H 0.96996 * 120.00341 * 179.97438 * 8 7 5 35 35 H 1.08003 * 120.01777 * 359.73427 * 17 16 14 36 36 H 1.09001 * 109.46509 * 60.00487 * 22 21 20 37 37 H 1.09001 * 109.47356 * 180.02562 * 22 21 20 38 38 H 1.08995 * 109.47110 * 300.00564 * 22 21 20 39 39 H 1.08002 * 119.93139 * 180.02562 * 23 20 19 40 40 H 1.09000 * 109.46889 * 58.54805 * 27 25 24 41 41 H 1.09003 * 109.46833 * 178.54899 * 27 25 24 42 42 H 1.08995 * 109.46821 * 298.54702 * 27 25 24 43 43 H 1.09000 * 110.94253 * 282.51983 * 28 18 17 44 44 H 1.09003 * 110.94134 * 46.20901 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5420 1.4442 0.1239 6 1 4.1474 1.8887 -0.6523 7 6 4.1434 0.8782 1.2280 8 7 3.4063 0.3372 2.1733 9 14 6.0050 0.8798 1.3812 10 1 6.5006 2.2796 1.3808 11 1 6.3979 0.2164 2.6503 12 1 6.5967 0.1450 0.2344 13 8 1.6561 2.0916 -1.2407 14 6 0.4684 2.7279 -1.2559 15 8 -0.2271 2.7403 -0.2597 16 6 0.0126 3.4093 -2.4819 17 6 -1.2194 4.0708 -2.5038 18 6 -1.6354 4.7085 -3.6473 19 6 -0.8515 4.7020 -4.7959 20 6 0.3835 4.0433 -4.7735 21 8 1.1654 4.0340 -5.8862 22 6 2.4138 3.3445 -5.7962 23 6 0.8113 3.4037 -3.6291 24 8 -1.4622 5.3708 -5.8115 25 6 -2.4731 6.2364 -5.2681 26 1 -2.0611 7.2216 -5.0495 27 6 -3.6620 6.3486 -6.2248 28 6 -2.8839 5.5084 -3.9664 29 1 -0.3632 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 3.8293 -0.0613 2.9499 35 1 -1.8432 4.0806 -1.6222 36 1 2.2335 2.2967 -5.5562 37 1 2.9371 3.4144 -6.7498 38 1 3.0231 3.7969 -5.0138 39 1 1.7655 2.8979 -3.6191 40 1 -4.0778 5.3573 -6.4054 41 1 -4.4257 6.9878 -5.7817 42 1 -3.3294 6.7806 -7.1685 43 1 -3.7348 4.8498 -4.1404 44 1 -3.1022 6.2231 -3.1728 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787090753.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:35 Heat of formation + Delta-G solvation = -154.049167 kcal Electronic energy + Delta-G solvation = -27220.663187 eV Core-core repulsion = 23296.200159 eV Total energy + Delta-G solvation = -3924.463028 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.48408 -41.30467 -40.15911 -38.15196 -37.25442 -35.51584 -33.96439 -33.40313 -32.29358 -30.99682 -29.35636 -28.54420 -27.40440 -25.74056 -24.77314 -22.70925 -22.65084 -22.45760 -21.34220 -19.40676 -18.79309 -18.69349 -18.22034 -17.72406 -17.25506 -17.10678 -16.80916 -16.40973 -16.37600 -15.86708 -15.03133 -14.80184 -14.73751 -14.45950 -14.33173 -13.98322 -13.93656 -13.54195 -13.38407 -13.36410 -13.26414 -13.13475 -13.00692 -12.81060 -12.58855 -12.52429 -12.51362 -12.18122 -12.15556 -11.99048 -11.78418 -11.74242 -11.50028 -11.35089 -10.84176 -10.53297 -9.76041 -9.09350 -8.27475 -6.44407 -0.48681 0.11679 1.41492 1.45022 1.48349 1.52995 1.87638 2.06416 2.23348 2.40703 2.53587 3.02178 3.29494 3.52630 3.63049 3.81862 4.01490 4.04433 4.07336 4.20016 4.29527 4.36384 4.37014 4.38726 4.44949 4.56854 4.68254 4.70049 4.76002 4.78484 4.83872 4.86648 5.01828 5.04562 5.07485 5.15364 5.20379 5.25175 5.32659 5.36600 5.50170 5.65721 5.77640 5.94212 6.09015 6.29254 6.59227 6.93453 7.26493 8.79250 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.019036 B = 0.003243 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.578708 B = 8632.007763 C = 9554.248850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.129 4.129 3 C 0.226 3.774 4 H 0.008 0.992 5 C -0.550 4.550 6 H 0.067 0.933 7 C 0.018 3.982 8 N -0.914 5.914 9 Si 0.980 3.020 10 H -0.270 1.270 11 H -0.278 1.278 12 H -0.263 1.263 13 O -0.357 6.357 14 C 0.498 3.502 15 O -0.537 6.537 16 C -0.126 4.126 17 C -0.042 4.042 18 C -0.149 4.149 19 C 0.103 3.897 20 C 0.091 3.909 21 O -0.323 6.323 22 C 0.015 3.985 23 C -0.120 4.120 24 O -0.305 6.305 25 C 0.066 3.934 26 H 0.101 0.899 27 C -0.144 4.144 28 C -0.097 4.097 29 H 0.037 0.963 30 H 0.033 0.967 31 H 0.062 0.938 32 H 0.046 0.954 33 H 0.088 0.912 34 H 0.271 0.729 35 H 0.146 0.854 36 H 0.061 0.939 37 H 0.129 0.871 38 H 0.060 0.940 39 H 0.154 0.846 40 H 0.064 0.936 41 H 0.107 0.893 42 H 0.069 0.931 43 H 0.112 0.888 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.984 10.351 -16.738 22.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.167 4.167 3 C 0.173 3.827 4 H 0.026 0.974 5 C -0.588 4.588 6 H 0.085 0.915 7 C -0.182 4.182 8 N -0.551 5.551 9 Si 0.803 3.197 10 H -0.195 1.195 11 H -0.203 1.203 12 H -0.188 1.188 13 O -0.273 6.273 14 C 0.345 3.655 15 O -0.429 6.429 16 C -0.128 4.128 17 C -0.061 4.061 18 C -0.150 4.150 19 C 0.056 3.944 20 C 0.046 3.954 21 O -0.238 6.238 22 C -0.079 4.079 23 C -0.139 4.139 24 O -0.220 6.220 25 C 0.011 3.989 26 H 0.119 0.881 27 C -0.201 4.201 28 C -0.134 4.134 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.081 0.919 32 H 0.065 0.935 33 H 0.106 0.894 34 H 0.080 0.920 35 H 0.164 0.836 36 H 0.079 0.921 37 H 0.147 0.853 38 H 0.079 0.921 39 H 0.172 0.828 40 H 0.083 0.917 41 H 0.125 0.875 42 H 0.088 0.912 43 H 0.130 0.870 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -11.143 10.317 -16.689 22.564 hybrid contribution 1.162 -0.468 0.967 1.583 sum -9.980 9.849 -15.722 21.066 Atomic orbital electron populations 1.21719 0.96372 1.00631 1.00060 1.21874 0.94405 0.98032 1.02421 1.20425 0.94642 0.89271 0.78350 0.97382 1.21280 0.90340 1.40122 1.07011 0.91509 1.25788 1.04184 0.93857 0.94328 1.70002 1.37511 1.37801 1.09835 0.85275 0.77725 0.78751 0.77927 1.19455 1.20257 1.18797 1.86503 1.35054 1.62980 1.42787 1.21347 0.79956 0.76155 0.88075 1.90753 1.55949 1.59818 1.36405 1.18834 0.97629 1.04589 0.91724 1.20318 0.93660 0.93959 0.98142 1.20759 0.98111 1.03493 0.92588 1.19158 0.90783 0.95587 0.88829 1.18074 0.89609 1.00383 0.87378 1.86127 1.32034 1.73032 1.32589 1.23398 0.82337 0.96590 1.05582 1.21283 1.01477 1.00240 0.90857 1.86895 1.50183 1.54990 1.29940 1.23828 0.88288 0.93405 0.93352 0.88079 1.21921 0.95219 1.03855 0.99132 1.22062 0.94228 0.98749 0.98339 0.94359 0.94746 0.91925 0.93541 0.89360 0.91990 0.83636 0.92054 0.85290 0.92129 0.82819 0.91656 0.87484 0.91163 0.86975 0.86131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.84 8.57 71.98 0.62 -5.23 16 2 C -0.13 -6.58 5.49 30.59 0.17 -6.41 16 3 C 0.23 12.43 2.25 29.85 0.07 12.50 16 4 H 0.01 0.52 7.16 -2.39 -0.02 0.50 16 5 C -0.55 -31.15 8.90 25.60 0.23 -30.93 16 6 H 0.07 3.69 7.81 -2.91 -0.02 3.66 16 7 C 0.02 1.01 5.29 84.65 0.45 1.46 16 8 N -0.91 -52.20 11.29 21.45 0.24 -51.96 16 9 Si 0.98 42.66 29.54 68.60 2.03 44.68 16 10 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 11 H -0.28 -11.67 7.11 99.48 0.71 -10.97 16 12 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 13 O -0.36 -17.53 9.06 -56.58 -0.51 -18.05 16 14 C 0.50 22.20 6.34 70.26 0.45 22.64 16 15 O -0.54 -26.06 13.54 19.82 0.27 -25.79 16 16 C -0.13 -4.50 5.88 -20.08 -0.12 -4.62 16 17 C -0.04 -1.26 9.58 22.46 0.22 -1.05 16 18 C -0.15 -3.66 6.25 -19.56 -0.12 -3.78 16 19 C 0.10 2.84 6.98 22.89 0.16 3.00 16 20 C 0.09 2.71 6.70 22.61 0.15 2.86 16 21 O -0.32 -8.94 10.50 -93.55 -0.98 -9.92 16 22 C 0.02 0.31 9.81 113.37 1.11 1.42 16 23 C -0.12 -3.85 8.58 22.57 0.19 -3.66 16 24 O -0.31 -7.49 10.81 -94.42 -1.02 -8.51 16 25 C 0.07 1.00 4.26 31.18 0.13 1.13 16 26 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 27 C -0.14 -1.36 9.60 71.98 0.69 -0.67 16 28 C -0.10 -1.46 6.65 30.74 0.20 -1.26 16 29 H 0.04 1.80 7.79 -2.39 -0.02 1.78 16 30 H 0.03 1.49 6.06 -2.39 -0.01 1.48 16 31 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 32 H 0.05 2.26 8.14 -2.38 -0.02 2.24 16 33 H 0.09 4.87 5.95 -2.39 -0.01 4.86 16 34 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 35 H 0.15 4.15 7.66 -2.91 -0.02 4.13 16 36 H 0.06 1.25 7.65 -2.39 -0.02 1.23 16 37 H 0.13 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.06 1.25 7.65 -2.39 -0.02 1.23 16 39 H 0.15 4.88 5.79 -2.91 -0.02 4.86 16 40 H 0.06 0.68 8.11 -2.39 -0.02 0.66 16 41 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 42 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 43 H 0.11 1.37 7.90 -2.39 -0.02 1.35 16 44 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -70.20 362.00 5.63 -64.57 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: 1.01 Total: 17.57 kcal Atomic # 6 Polarization: -17.19 SS G_CDS: 4.59 Total: -12.60 kcal Atomic # 7 Polarization: -52.20 SS G_CDS: 0.24 Total: -51.96 kcal Atomic # 8 Polarization: -60.02 SS G_CDS: -2.25 Total: -62.27 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.68 kcal Total: -70.20 5.63 -64.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787090753.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.478 kcal (2) G-P(sol) polarization free energy of solvation -70.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds