Wall clock time and date at job start Tue Mar 31 2020 13:04:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47361 * 2 1 4 4 H 1.09003 * 109.46947 * 305.00397 * 3 2 1 5 5 O 1.45202 * 109.47133 * 64.99948 * 3 2 1 6 6 C 1.34233 * 116.99854 * 270.00266 * 5 3 2 7 7 O 1.20827 * 120.00001 * 0.02562 * 6 5 3 8 8 C 1.50701 * 119.99808 * 180.02562 * 6 5 3 9 9 C 1.52999 * 109.47104 * 180.02562 * 8 6 5 10 10 H 1.08995 * 109.47667 * 54.99568 * 9 8 6 11 11 C 1.50701 * 109.46713 * 294.99662 * 9 8 6 12 12 H 1.08003 * 120.00136 * 325.83328 * 11 9 8 13 13 C 1.37875 * 119.99968 * 145.83285 * 11 9 8 14 14 N 1.31514 * 120.00227 * 6.12191 * 13 11 9 15 15 Si 1.86806 * 120.00312 * 186.11912 * 13 11 9 16 16 H 1.48497 * 109.46561 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.46989 * 120.00030 * 15 13 11 18 18 H 1.48502 * 109.47070 * 240.00375 * 15 13 11 19 19 C 1.50701 * 109.47285 * 175.00081 * 9 8 6 20 20 C 1.38235 * 119.99988 * 63.46248 * 19 9 8 21 21 C 1.38234 * 119.99712 * 179.78798 * 20 19 9 22 22 C 1.38233 * 120.00086 * 0.44570 * 21 20 19 23 23 C 1.38231 * 120.00264 * 359.81161 * 22 21 20 24 24 C 1.38234 * 119.99669 * 243.74246 * 19 9 8 25 25 C 1.50700 * 109.47303 * 185.00170 * 3 2 1 26 26 O 1.20827 * 119.99631 * 244.99930 * 25 3 2 27 27 O 1.34227 * 120.00176 * 64.99979 * 25 3 2 28 28 C 1.45194 * 117.00168 * 179.97438 * 27 25 3 29 29 H 1.09003 * 109.47057 * 59.99630 * 1 2 3 30 30 H 1.09002 * 109.47328 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46849 * 300.00348 * 1 2 3 32 32 H 1.09001 * 109.47451 * 240.00094 * 2 1 3 33 33 H 1.09003 * 109.47096 * 119.99815 * 2 1 3 34 34 H 1.09003 * 109.46733 * 299.99781 * 8 6 5 35 35 H 1.08998 * 109.47129 * 59.99631 * 8 6 5 36 36 H 0.96996 * 120.00508 * 179.97438 * 14 13 11 37 37 H 1.08001 * 120.00221 * 0.02562 * 20 19 9 38 38 H 1.08000 * 119.99710 * 180.27572 * 21 20 19 39 39 H 1.08005 * 120.00219 * 179.82825 * 22 21 20 40 40 H 1.08000 * 120.00784 * 180.02562 * 23 22 21 41 41 H 1.07996 * 120.00151 * 359.97438 * 24 19 9 42 42 H 1.08999 * 109.46827 * 59.99969 * 28 27 25 43 43 H 1.08999 * 109.47577 * 180.02562 * 28 27 25 44 44 H 1.09002 * 109.47456 * 300.00245 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 8 1.6559 2.0917 1.2407 6 6 0.4727 2.7255 1.2559 7 8 -0.2192 2.7370 0.2655 8 6 0.0075 3.4227 2.5084 9 6 -1.3613 4.0592 2.2592 10 1 -2.0558 3.2992 1.9013 11 6 -1.2288 5.1461 1.2237 12 1 -0.3290 5.7418 1.1782 13 6 -2.2561 5.3800 0.3344 14 7 -3.3971 4.7391 0.4645 15 14 -2.0274 6.6072 -1.0553 16 1 -0.6634 7.1896 -0.9816 17 1 -2.2020 5.9173 -2.3586 18 1 -3.0351 7.6907 -0.9297 19 6 -1.8818 4.6503 3.5440 20 6 -1.2028 5.6899 4.1515 21 6 -1.6827 6.2350 5.3277 22 6 -2.8365 5.7343 5.9013 23 6 -3.5126 4.6912 5.2966 24 6 -3.0351 4.1490 4.1181 25 6 3.5419 1.4443 -0.1239 26 8 4.2225 1.8595 0.7841 27 8 4.1237 0.9847 -1.2428 28 6 5.5744 1.0170 -1.2927 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 -0.0711 2.6986 3.3193 35 1 0.7246 4.1970 2.7809 36 1 -4.1200 4.9039 -0.1609 37 1 -0.2995 6.0788 3.7052 38 1 -1.1547 7.0502 5.8000 39 1 -3.2099 6.1584 6.8218 40 1 -4.4143 4.3003 5.7445 41 1 -3.5633 3.3341 3.6456 42 1 5.9793 0.4113 -0.4820 43 1 5.9141 0.6189 -2.2488 44 1 5.9189 2.0455 -1.1848 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000795991441.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:33 Heat of formation + Delta-G solvation = -167.298414 kcal Electronic energy + Delta-G solvation = -27332.912107 eV Core-core repulsion = 23407.874548 eV Total energy + Delta-G solvation = -3925.037559 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.10653 -41.16733 -39.89117 -38.00791 -37.36895 -35.82691 -34.79002 -33.44890 -31.49636 -30.65122 -29.93515 -28.11418 -27.37092 -24.80696 -23.44990 -23.18346 -22.60093 -21.60256 -20.98415 -19.11949 -18.68445 -18.47110 -18.09920 -17.66404 -17.34625 -17.04353 -16.60449 -16.30962 -15.62768 -15.47635 -15.20242 -14.87542 -14.70469 -14.35192 -14.20950 -13.94735 -13.68767 -13.59111 -13.49764 -13.33034 -13.22064 -12.99244 -12.87582 -12.85603 -12.61765 -12.49092 -12.03013 -11.89274 -11.83136 -11.80133 -11.68715 -11.42771 -11.31784 -11.16097 -10.95990 -10.47546 -9.53284 -9.21125 -8.07310 -6.10931 0.78774 0.80297 0.89063 0.99427 1.35532 1.38992 1.46571 1.46831 2.14964 2.44406 3.17473 3.33935 3.45740 3.60270 3.78569 3.94624 4.23715 4.26084 4.30060 4.31696 4.35917 4.36614 4.38514 4.50403 4.55087 4.67307 4.70770 4.70851 4.86204 4.91706 4.95385 5.00646 5.12715 5.12868 5.32998 5.36632 5.44328 5.53395 5.60315 5.76861 5.84719 5.93991 6.14185 6.37871 6.46346 6.49642 6.95940 7.00449 7.53111 9.01977 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.012428 B = 0.003955 C = 0.003504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.440370 B = 7078.533475 C = 7988.690285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.120 4.120 3 C 0.088 3.912 4 H 0.114 0.886 5 O -0.349 6.349 6 C 0.465 3.535 7 O -0.490 6.490 8 C -0.091 4.091 9 C 0.083 3.917 10 H 0.037 0.963 11 C -0.496 4.496 12 H 0.046 0.954 13 C 0.033 3.967 14 N -0.910 5.910 15 Si 0.931 3.069 16 H -0.269 1.269 17 H -0.287 1.287 18 H -0.283 1.283 19 C -0.047 4.047 20 C -0.129 4.129 21 C -0.128 4.128 22 C -0.146 4.146 23 C -0.128 4.128 24 C -0.139 4.139 25 C 0.474 3.526 26 O -0.516 6.516 27 O -0.351 6.351 28 C 0.027 3.973 29 H 0.051 0.949 30 H 0.083 0.917 31 H 0.031 0.969 32 H 0.118 0.882 33 H 0.086 0.914 34 H 0.103 0.897 35 H 0.101 0.899 36 H 0.256 0.744 37 H 0.114 0.886 38 H 0.139 0.861 39 H 0.143 0.857 40 H 0.133 0.867 41 H 0.099 0.901 42 H 0.069 0.931 43 H 0.140 0.860 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.314 -8.396 2.197 14.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.157 4.157 3 C 0.031 3.969 4 H 0.131 0.869 5 O -0.268 6.268 6 C 0.307 3.693 7 O -0.374 6.374 8 C -0.128 4.128 9 C 0.064 3.936 10 H 0.056 0.944 11 C -0.534 4.534 12 H 0.065 0.935 13 C -0.167 4.167 14 N -0.549 5.549 15 Si 0.759 3.241 16 H -0.194 1.194 17 H -0.214 1.214 18 H -0.209 1.209 19 C -0.047 4.047 20 C -0.147 4.147 21 C -0.146 4.146 22 C -0.164 4.164 23 C -0.146 4.146 24 C -0.157 4.157 25 C 0.317 3.683 26 O -0.404 6.404 27 O -0.267 6.267 28 C -0.066 4.066 29 H 0.070 0.930 30 H 0.102 0.898 31 H 0.050 0.950 32 H 0.136 0.864 33 H 0.105 0.895 34 H 0.122 0.878 35 H 0.120 0.880 36 H 0.065 0.935 37 H 0.132 0.868 38 H 0.157 0.843 39 H 0.161 0.839 40 H 0.151 0.849 41 H 0.118 0.882 42 H 0.088 0.912 43 H 0.158 0.842 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 11.186 -8.301 2.029 14.077 hybrid contribution -0.097 0.875 -1.217 1.503 sum 11.089 -7.426 0.811 13.371 Atomic orbital electron populations 1.21780 0.94352 1.02665 1.01602 1.21917 0.97122 0.91049 1.05643 1.22165 0.88128 0.97953 0.88633 0.86868 1.86610 1.38821 1.64514 1.36861 1.24113 0.78026 0.75408 0.91727 1.90717 1.54748 1.55997 1.35956 1.21570 0.99824 0.99663 0.91771 1.17692 0.90502 0.95338 0.90071 0.94441 1.21007 1.01067 1.17175 1.14117 0.93537 1.25396 0.95164 0.97162 0.98968 1.70028 1.03923 1.43487 1.37443 0.85920 0.78097 0.79527 0.80578 1.19391 1.21367 1.20899 1.20450 0.94753 0.95452 0.94065 1.21060 1.00806 0.96807 0.96015 1.21360 0.97175 1.00229 0.95818 1.21273 0.96264 0.97709 1.01171 1.21302 1.00250 0.97531 0.95535 1.21115 0.97068 1.01153 0.96394 1.23183 0.90902 0.73827 0.80409 1.90676 1.65692 1.43362 1.40716 1.86471 1.26373 1.75589 1.38280 1.23693 0.73773 1.03294 1.05812 0.93003 0.89796 0.94961 0.86421 0.89499 0.87841 0.88039 0.93483 0.86823 0.84338 0.83918 0.84876 0.88241 0.91206 0.84160 0.92086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.10 8.57 71.98 0.62 -3.48 16 2 C -0.12 -2.86 5.63 30.59 0.17 -2.69 16 3 C 0.09 2.66 2.78 29.85 0.08 2.75 16 4 H 0.11 3.65 7.16 -2.39 -0.02 3.64 16 5 O -0.35 -12.68 9.36 -45.09 -0.42 -13.11 16 6 C 0.46 19.04 6.16 71.24 0.44 19.48 16 7 O -0.49 -23.02 12.13 21.96 0.27 -22.75 16 8 C -0.09 -3.60 5.06 29.85 0.15 -3.45 16 9 C 0.08 3.95 1.67 -12.29 -0.02 3.93 16 10 H 0.04 2.05 6.98 -2.39 -0.02 2.04 16 11 C -0.50 -26.47 6.37 25.60 0.16 -26.31 16 12 H 0.05 2.48 7.82 -2.91 -0.02 2.46 16 13 C 0.03 1.85 5.45 84.65 0.46 2.31 16 14 N -0.91 -53.47 12.87 21.45 0.28 -53.19 16 15 Si 0.93 45.31 29.54 68.60 2.03 47.34 16 16 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 17 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 18 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 19 C -0.05 -2.04 4.77 -19.87 -0.09 -2.14 16 20 C -0.13 -5.03 8.86 22.27 0.20 -4.83 16 21 C -0.13 -4.18 10.05 22.27 0.22 -3.96 16 22 C -0.15 -4.51 10.05 22.27 0.22 -4.29 16 23 C -0.13 -4.39 10.05 22.27 0.22 -4.17 16 24 C -0.14 -5.78 9.67 22.27 0.22 -5.57 16 25 C 0.47 13.67 7.29 71.24 0.52 14.19 16 26 O -0.52 -17.77 16.26 28.31 0.46 -17.31 16 27 O -0.35 -7.89 10.53 -51.39 -0.54 -8.43 16 28 C 0.03 0.41 10.56 113.37 1.20 1.60 16 29 H 0.05 1.62 7.80 -2.39 -0.02 1.60 16 30 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.03 1.07 6.06 -2.39 -0.01 1.05 16 32 H 0.12 2.13 8.12 -2.39 -0.02 2.11 16 33 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.10 3.57 8.14 -2.39 -0.02 3.55 16 35 H 0.10 3.79 7.78 -2.39 -0.02 3.77 16 36 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 37 H 0.11 4.34 7.76 -2.91 -0.02 4.31 16 38 H 0.14 3.60 8.06 -2.91 -0.02 3.57 16 39 H 0.14 3.33 8.06 -2.91 -0.02 3.31 16 40 H 0.13 3.76 8.06 -2.91 -0.02 3.74 16 41 H 0.10 4.30 7.95 -2.91 -0.02 4.28 16 42 H 0.07 1.01 8.13 -2.39 -0.02 0.99 16 43 H 0.14 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.06 0.99 8.13 -2.39 -0.02 0.97 16 Total: -1.00 -70.10 373.72 7.83 -62.27 By element: Atomic # 1 Polarization: 20.81 SS G_CDS: 0.99 Total: 21.80 kcal Atomic # 6 Polarization: -21.39 SS G_CDS: 4.77 Total: -16.62 kcal Atomic # 7 Polarization: -53.47 SS G_CDS: 0.28 Total: -53.19 kcal Atomic # 8 Polarization: -61.36 SS G_CDS: -0.24 Total: -61.60 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -70.10 7.83 -62.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795991441.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.026 kcal (2) G-P(sol) polarization free energy of solvation -70.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds