Wall clock time and date at job start Tue Mar 31 2020 13:02:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47056 * 2 1 4 4 H 1.08996 * 109.47247 * 55.00003 * 3 2 1 5 5 C 1.50707 * 109.47210 * 174.99937 * 3 2 1 6 6 H 1.07997 * 119.99807 * 119.99766 * 5 3 2 7 7 C 1.37882 * 119.99775 * 300.00048 * 5 3 2 8 8 N 1.31508 * 120.00090 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99502 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47025 * 90.00326 * 9 7 5 11 11 H 1.48506 * 109.46744 * 209.99598 * 9 7 5 12 12 H 1.48500 * 109.47461 * 329.99795 * 9 7 5 13 13 O 1.45203 * 109.47155 * 294.99516 * 3 2 1 14 14 C 1.34232 * 116.99685 * 90.00217 * 13 3 2 15 15 O 1.20828 * 119.99839 * 0.02562 * 14 13 3 16 16 C 1.50691 * 120.00076 * 180.02562 * 14 13 3 17 17 C 1.53000 * 109.47126 * 295.38274 * 16 14 13 18 18 C 1.53001 * 109.47277 * 55.37840 * 16 14 13 19 19 C 1.50695 * 109.47310 * 175.38275 * 16 14 13 20 20 C 1.38260 * 119.92961 * 65.87298 * 19 16 14 21 21 C 1.38234 * 120.14225 * 179.97438 * 20 19 16 22 22 C 1.38553 * 120.03208 * 0.02562 * 21 20 19 23 23 C 1.39269 * 119.82618 * 359.97438 * 22 21 20 24 24 C 1.38239 * 119.92901 * 245.59379 * 19 16 14 25 25 O 1.36497 * 108.63675 * 179.97438 * 23 22 21 26 26 C 1.43991 * 105.48936 * 342.71798 * 25 23 22 27 27 O 1.36493 * 131.53204 * 179.97438 * 22 21 20 28 28 H 1.09005 * 109.47176 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47136 * 300.00196 * 1 2 3 30 30 H 1.08997 * 109.47290 * 60.00434 * 1 2 3 31 31 H 1.09003 * 109.47136 * 239.99804 * 2 1 3 32 32 H 1.09007 * 109.47355 * 119.99701 * 2 1 3 33 33 H 0.96995 * 120.00440 * 180.02562 * 8 7 5 34 34 H 1.08996 * 109.47475 * 59.99822 * 17 16 14 35 35 H 1.09001 * 109.47776 * 180.02562 * 17 16 14 36 36 H 1.09007 * 109.46994 * 299.99759 * 17 16 14 37 37 H 1.09005 * 109.47033 * 60.00321 * 18 16 14 38 38 H 1.09001 * 109.47152 * 180.02562 * 18 16 14 39 39 H 1.08991 * 109.47402 * 300.00344 * 18 16 14 40 40 H 1.07998 * 119.92703 * 359.97438 * 20 19 16 41 41 H 1.07995 * 119.98894 * 179.97438 * 21 20 19 42 42 H 1.08000 * 119.98693 * 0.02562 * 24 19 16 43 43 H 1.08996 * 110.56657 * 268.55978 * 26 25 23 44 44 H 1.08998 * 110.57338 * 145.68221 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4443 0.1239 6 1 4.1471 1.8889 -0.6523 7 6 4.1432 0.8784 1.2281 8 7 3.4062 0.3375 2.1733 9 14 6.0050 0.8801 1.3811 10 1 6.4427 2.1130 2.0837 11 1 6.4390 -0.3110 2.1547 12 1 6.6131 0.8395 0.0270 13 8 1.6559 2.0916 -1.2408 14 6 0.4727 2.7254 -1.2561 15 8 -0.2189 2.7377 -0.2653 16 6 0.0070 3.4215 -2.5088 17 6 0.9511 4.5823 -2.8282 18 6 0.0064 2.4294 -3.6735 19 6 -1.3881 3.9517 -2.2998 20 6 -1.6130 4.9576 -1.3783 21 6 -2.8908 5.4476 -1.1835 22 6 -3.9502 4.9306 -1.9117 23 6 -3.7237 3.9173 -2.8398 24 6 -2.4394 3.4352 -3.0340 25 8 -4.9133 3.5828 -3.4195 26 6 -5.9287 4.1137 -2.5474 27 8 -5.2816 5.2313 -1.9102 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8901 33 1 3.8291 -0.0603 2.9503 34 1 1.9602 4.1990 -2.9794 35 1 0.6140 5.0862 -3.7341 36 1 0.9515 5.2893 -1.9985 37 1 -0.6662 1.6024 -3.4459 38 1 -0.3300 2.9330 -4.5797 39 1 1.0154 2.0460 -3.8246 40 1 -0.7885 5.3615 -0.8096 41 1 -3.0637 6.2331 -0.4628 42 1 -2.2603 2.6523 -3.7560 43 1 -6.2255 3.3699 -1.8079 44 1 -6.7915 4.4484 -3.1232 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797145997.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:02:03 Heat of formation + Delta-G solvation = -130.324251 kcal Electronic energy + Delta-G solvation = -27853.130543 eV Core-core repulsion = 23929.696304 eV Total energy + Delta-G solvation = -3923.434239 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.23940 -40.25313 -38.27188 -36.36745 -35.76201 -34.79762 -33.41658 -31.34491 -30.70174 -29.28948 -27.41914 -27.22794 -25.90390 -24.19936 -23.31214 -22.74609 -22.28978 -20.22486 -19.22605 -17.99436 -17.68430 -17.36558 -16.69943 -16.50460 -16.28390 -15.35741 -15.29311 -14.74177 -14.56820 -14.39892 -14.10617 -13.82843 -13.26646 -13.07481 -13.06762 -12.85562 -12.72945 -12.65915 -12.24817 -11.99684 -11.87276 -11.57424 -11.46888 -11.26372 -11.18572 -11.16784 -10.93803 -10.79157 -10.71981 -10.64245 -10.28010 -9.78036 -9.49626 -9.33292 -8.86217 -8.79415 -8.45962 -8.05545 -6.19204 -4.26319 1.08793 1.21791 2.62767 3.01292 3.23387 3.28837 3.30944 3.33143 3.45595 3.84925 4.32710 4.42672 4.48678 4.52535 4.74130 4.84509 5.01785 5.11364 5.12964 5.20196 5.25724 5.46734 5.49923 5.67652 5.77484 5.84494 5.95729 5.98058 6.04767 6.14651 6.21104 6.23471 6.29196 6.34296 6.37311 6.47474 6.53630 6.87219 6.97172 7.06411 7.17025 7.26646 7.61348 7.73656 7.95259 8.15708 8.64487 8.89752 9.39067 10.87464 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.024068 B = 0.003200 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.076619 B = 8748.376042 C = 8961.061304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.135 4.135 3 C 0.222 3.778 4 H 0.046 0.954 5 C -0.521 4.521 6 H 0.068 0.932 7 C 0.063 3.937 8 N -0.888 5.888 9 Si 0.910 3.090 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.271 1.271 13 O -0.350 6.350 14 C 0.461 3.539 15 O -0.508 6.508 16 C -0.014 4.014 17 C -0.137 4.137 18 C -0.145 4.145 19 C -0.050 4.050 20 C -0.074 4.074 21 C -0.099 4.099 22 C 0.027 3.973 23 C 0.026 3.974 24 C -0.092 4.092 25 O -0.311 6.311 26 C 0.214 3.786 27 O -0.312 6.312 28 H 0.032 0.968 29 H 0.052 0.948 30 H 0.032 0.968 31 H 0.041 0.959 32 H 0.108 0.892 33 H 0.266 0.734 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.069 0.931 39 H 0.079 0.921 40 H 0.138 0.862 41 H 0.135 0.865 42 H 0.140 0.860 43 H 0.082 0.918 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.909 7.572 -10.840 18.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.173 4.173 3 C 0.170 3.830 4 H 0.064 0.936 5 C -0.559 4.559 6 H 0.087 0.913 7 C -0.139 4.139 8 N -0.525 5.525 9 Si 0.737 3.263 10 H -0.204 1.204 11 H -0.210 1.210 12 H -0.196 1.196 13 O -0.266 6.266 14 C 0.303 3.697 15 O -0.397 6.397 16 C -0.016 4.016 17 C -0.195 4.195 18 C -0.202 4.202 19 C -0.051 4.051 20 C -0.092 4.092 21 C -0.117 4.117 22 C -0.017 4.017 23 C -0.018 4.018 24 C -0.110 4.110 25 O -0.227 6.227 26 C 0.102 3.898 27 O -0.228 6.228 28 H 0.051 0.949 29 H 0.071 0.929 30 H 0.051 0.949 31 H 0.060 0.940 32 H 0.126 0.874 33 H 0.076 0.924 34 H 0.098 0.902 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.088 0.912 39 H 0.098 0.902 40 H 0.156 0.844 41 H 0.153 0.847 42 H 0.158 0.842 43 H 0.100 0.900 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -13.241 7.506 -10.453 18.464 hybrid contribution 0.478 -0.232 0.415 0.674 sum -12.763 7.274 -10.039 17.793 Atomic orbital electron populations 1.21855 0.98397 0.98929 1.00762 1.22015 0.92581 0.99440 1.03310 1.20661 0.94927 0.88721 0.78715 0.93599 1.21039 0.89698 1.38924 1.06196 0.91339 1.24881 0.99153 0.94783 0.95117 1.69886 1.35364 1.37850 1.09436 0.86307 0.84002 0.77688 0.78346 1.20430 1.20984 1.19588 1.86458 1.33918 1.62286 1.43980 1.22889 0.80946 0.77064 0.88778 1.90626 1.55385 1.58112 1.35565 1.19289 0.91986 0.96701 0.93595 1.21875 0.99307 0.96053 1.02227 1.21950 1.04149 0.98115 0.95944 1.19081 0.93077 0.96276 0.96648 1.20768 0.95899 0.95852 0.96720 1.20011 0.89672 1.02349 0.99689 1.19792 0.84771 0.97674 0.99481 1.19637 0.88266 0.98088 0.95813 1.19986 0.87692 1.01089 1.02261 1.87333 1.13367 1.75934 1.46114 1.25583 0.90725 0.84581 0.88944 1.87336 1.16042 1.41730 1.77721 0.94919 0.92874 0.94928 0.94002 0.87407 0.92407 0.90240 0.91258 0.91824 0.91856 0.91203 0.90160 0.84447 0.84715 0.84217 0.90024 0.85398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 8.57 37.15 0.32 -2.79 16 2 C -0.14 -3.32 5.49 -26.73 -0.15 -3.46 16 3 C 0.22 5.74 2.25 -27.88 -0.06 5.68 16 4 H 0.05 1.32 7.16 -51.93 -0.37 0.95 16 5 C -0.52 -14.20 8.90 -34.43 -0.31 -14.50 16 6 H 0.07 1.84 7.81 -52.49 -0.41 1.43 16 7 C 0.06 1.69 5.29 -17.82 -0.09 1.60 16 8 N -0.89 -24.74 11.29 55.43 0.63 -24.11 16 9 Si 0.91 20.70 29.54 -169.99 -5.02 15.68 16 10 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 11 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 12 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 13 O -0.35 -7.89 9.55 -39.26 -0.38 -8.27 16 14 C 0.46 9.12 4.93 36.00 0.18 9.29 16 15 O -0.51 -11.27 12.46 -18.75 -0.23 -11.51 16 16 C -0.01 -0.21 0.80 -156.82 -0.13 -0.34 16 17 C -0.14 -1.71 8.19 37.16 0.30 -1.41 16 18 C -0.14 -1.81 7.04 37.16 0.26 -1.55 16 19 C -0.05 -0.72 4.33 -104.62 -0.45 -1.17 16 20 C -0.07 -1.04 8.13 -39.58 -0.32 -1.36 16 21 C -0.10 -1.30 10.06 -39.47 -0.40 -1.69 16 22 C 0.03 0.37 7.15 -39.08 -0.28 0.09 16 23 C 0.03 0.36 7.15 -39.08 -0.28 0.08 16 24 C -0.09 -1.25 9.00 -39.47 -0.36 -1.61 16 25 O -0.31 -3.95 11.40 -45.68 -0.52 -4.47 16 26 C 0.21 2.05 8.89 101.05 0.90 2.95 16 27 O -0.31 -3.93 11.40 -45.67 -0.52 -4.45 16 28 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.05 1.22 7.80 -51.93 -0.40 0.82 16 30 H 0.03 0.68 6.06 -51.93 -0.31 0.37 16 31 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.11 2.88 5.95 -51.92 -0.31 2.57 16 33 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 34 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.78 7.08 -51.92 -0.37 0.42 16 37 H 0.06 0.81 7.25 -51.93 -0.38 0.43 16 38 H 0.07 0.68 7.77 -51.93 -0.40 0.28 16 39 H 0.08 1.04 8.03 -51.93 -0.42 0.62 16 40 H 0.14 1.84 7.22 -52.49 -0.38 1.46 16 41 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 42 H 0.14 1.66 5.90 -52.49 -0.31 1.36 16 43 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.13 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 356.39 15.07 5.37 5.37 Total: -1.00 -31.14 356.39 -7.69 -38.83 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -6.16 Total: 3.13 kcal Atomic # 6 Polarization: -9.33 SS G_CDS: -0.86 Total: -10.19 kcal Atomic # 7 Polarization: -24.74 SS G_CDS: 0.63 Total: -24.11 kcal Atomic # 8 Polarization: -27.05 SS G_CDS: -1.65 Total: -28.70 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.14 -7.69 -38.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797145997.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.493 kcal (2) G-P(sol) polarization free energy of solvation -31.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds