Wall clock time and date at job start Tue Mar 31 2020 13:02:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47056 * 2 1 4 4 H 1.08996 * 109.47247 * 55.00003 * 3 2 1 5 5 C 1.50707 * 109.47210 * 174.99937 * 3 2 1 6 6 H 1.07997 * 119.99807 * 119.99766 * 5 3 2 7 7 C 1.37882 * 119.99775 * 300.00048 * 5 3 2 8 8 N 1.31508 * 120.00090 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99502 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47025 * 90.00326 * 9 7 5 11 11 H 1.48506 * 109.46744 * 209.99598 * 9 7 5 12 12 H 1.48500 * 109.47461 * 329.99795 * 9 7 5 13 13 O 1.45203 * 109.47155 * 294.99516 * 3 2 1 14 14 C 1.34232 * 116.99685 * 90.00217 * 13 3 2 15 15 O 1.20828 * 119.99839 * 0.02562 * 14 13 3 16 16 C 1.50691 * 120.00076 * 180.02562 * 14 13 3 17 17 C 1.53000 * 109.47126 * 295.38274 * 16 14 13 18 18 C 1.53001 * 109.47277 * 55.37840 * 16 14 13 19 19 C 1.50695 * 109.47310 * 175.38275 * 16 14 13 20 20 C 1.38260 * 119.92961 * 65.87298 * 19 16 14 21 21 C 1.38234 * 120.14225 * 179.97438 * 20 19 16 22 22 C 1.38553 * 120.03208 * 0.02562 * 21 20 19 23 23 C 1.39269 * 119.82618 * 359.97438 * 22 21 20 24 24 C 1.38239 * 119.92901 * 245.59379 * 19 16 14 25 25 O 1.36497 * 108.63675 * 179.97438 * 23 22 21 26 26 C 1.43991 * 105.48936 * 342.71798 * 25 23 22 27 27 O 1.36493 * 131.53204 * 179.97438 * 22 21 20 28 28 H 1.09005 * 109.47176 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47136 * 300.00196 * 1 2 3 30 30 H 1.08997 * 109.47290 * 60.00434 * 1 2 3 31 31 H 1.09003 * 109.47136 * 239.99804 * 2 1 3 32 32 H 1.09007 * 109.47355 * 119.99701 * 2 1 3 33 33 H 0.96995 * 120.00440 * 180.02562 * 8 7 5 34 34 H 1.08996 * 109.47475 * 59.99822 * 17 16 14 35 35 H 1.09001 * 109.47776 * 180.02562 * 17 16 14 36 36 H 1.09007 * 109.46994 * 299.99759 * 17 16 14 37 37 H 1.09005 * 109.47033 * 60.00321 * 18 16 14 38 38 H 1.09001 * 109.47152 * 180.02562 * 18 16 14 39 39 H 1.08991 * 109.47402 * 300.00344 * 18 16 14 40 40 H 1.07998 * 119.92703 * 359.97438 * 20 19 16 41 41 H 1.07995 * 119.98894 * 179.97438 * 21 20 19 42 42 H 1.08000 * 119.98693 * 0.02562 * 24 19 16 43 43 H 1.08996 * 110.56657 * 268.55978 * 26 25 23 44 44 H 1.08998 * 110.57338 * 145.68221 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4443 0.1239 6 1 4.1471 1.8889 -0.6523 7 6 4.1432 0.8784 1.2281 8 7 3.4062 0.3375 2.1733 9 14 6.0050 0.8801 1.3811 10 1 6.4427 2.1130 2.0837 11 1 6.4390 -0.3110 2.1547 12 1 6.6131 0.8395 0.0270 13 8 1.6559 2.0916 -1.2408 14 6 0.4727 2.7254 -1.2561 15 8 -0.2189 2.7377 -0.2653 16 6 0.0070 3.4215 -2.5088 17 6 0.9511 4.5823 -2.8282 18 6 0.0064 2.4294 -3.6735 19 6 -1.3881 3.9517 -2.2998 20 6 -1.6130 4.9576 -1.3783 21 6 -2.8908 5.4476 -1.1835 22 6 -3.9502 4.9306 -1.9117 23 6 -3.7237 3.9173 -2.8398 24 6 -2.4394 3.4352 -3.0340 25 8 -4.9133 3.5828 -3.4195 26 6 -5.9287 4.1137 -2.5474 27 8 -5.2816 5.2313 -1.9102 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8901 33 1 3.8291 -0.0603 2.9503 34 1 1.9602 4.1990 -2.9794 35 1 0.6140 5.0862 -3.7341 36 1 0.9515 5.2893 -1.9985 37 1 -0.6662 1.6024 -3.4459 38 1 -0.3300 2.9330 -4.5797 39 1 1.0154 2.0460 -3.8246 40 1 -0.7885 5.3615 -0.8096 41 1 -3.0637 6.2331 -0.4628 42 1 -2.2603 2.6523 -3.7560 43 1 -6.2255 3.3699 -1.8079 44 1 -6.7915 4.4484 -3.1232 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797145997.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:02:03 Heat of formation + Delta-G solvation = -147.047691 kcal Electronic energy + Delta-G solvation = -27853.855726 eV Core-core repulsion = 23929.696304 eV Total energy + Delta-G solvation = -3924.159422 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.18372 -41.74024 -39.55479 -37.46331 -37.30205 -36.03946 -35.31694 -33.30105 -31.72481 -30.31070 -29.27364 -28.33776 -26.73670 -25.71233 -24.89086 -23.84293 -23.62251 -21.92782 -20.76100 -19.11164 -18.91380 -18.38832 -18.27944 -18.10305 -17.41030 -16.96528 -16.83729 -16.28586 -15.78253 -15.41060 -15.17497 -14.97159 -14.79014 -14.74170 -14.26799 -14.01236 -13.86035 -13.72345 -13.58389 -13.38227 -13.30296 -13.06845 -13.00065 -12.95659 -12.77042 -12.58556 -12.51210 -12.21866 -12.12426 -11.79880 -11.76236 -11.67958 -11.38527 -10.99789 -10.77479 -10.49836 -9.89362 -9.06873 -8.24996 -6.41320 0.02416 0.18699 1.42626 1.43982 1.45233 1.55934 1.67413 2.08566 2.41232 2.48746 2.65901 3.04883 3.38190 3.43776 3.75629 3.83600 3.94458 4.00775 4.07424 4.18227 4.23070 4.27337 4.37983 4.40378 4.51508 4.56966 4.75043 4.78035 4.82269 4.84455 4.89867 4.99775 5.02634 5.09486 5.14325 5.21690 5.24417 5.30104 5.33472 5.43144 5.48999 5.55041 5.70199 6.01857 6.08824 6.18612 6.64519 7.06838 7.31100 8.81549 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.024068 B = 0.003200 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.076619 B = 8748.376042 C = 8961.061304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.129 4.129 3 C 0.227 3.773 4 H 0.005 0.995 5 C -0.546 4.546 6 H 0.067 0.933 7 C 0.017 3.983 8 N -0.915 5.915 9 Si 0.978 3.022 10 H -0.273 1.273 11 H -0.278 1.278 12 H -0.262 1.262 13 O -0.355 6.355 14 C 0.455 3.545 15 O -0.536 6.536 16 C -0.006 4.006 17 C -0.136 4.136 18 C -0.144 4.144 19 C -0.061 4.061 20 C -0.084 4.084 21 C -0.103 4.103 22 C 0.019 3.981 23 C 0.017 3.983 24 C -0.094 4.094 25 O -0.320 6.320 26 C 0.204 3.796 27 O -0.322 6.322 28 H 0.058 0.942 29 H 0.032 0.968 30 H 0.037 0.963 31 H 0.046 0.954 32 H 0.084 0.916 33 H 0.269 0.731 34 H 0.073 0.927 35 H 0.101 0.899 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.104 0.896 39 H 0.074 0.926 40 H 0.135 0.865 41 H 0.152 0.848 42 H 0.156 0.844 43 H 0.097 0.903 44 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.344 7.846 -12.527 19.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.167 4.167 3 C 0.174 3.826 4 H 0.023 0.977 5 C -0.584 4.584 6 H 0.085 0.915 7 C -0.183 4.183 8 N -0.553 5.553 9 Si 0.801 3.199 10 H -0.199 1.199 11 H -0.203 1.203 12 H -0.186 1.186 13 O -0.272 6.272 14 C 0.299 3.701 15 O -0.426 6.426 16 C -0.007 4.007 17 C -0.193 4.193 18 C -0.201 4.201 19 C -0.062 4.062 20 C -0.103 4.103 21 C -0.122 4.122 22 C -0.026 4.026 23 C -0.027 4.027 24 C -0.112 4.112 25 O -0.237 6.237 26 C 0.093 3.907 27 O -0.239 6.239 28 H 0.077 0.923 29 H 0.052 0.948 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.102 0.898 33 H 0.078 0.922 34 H 0.092 0.908 35 H 0.120 0.880 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.122 0.878 39 H 0.093 0.907 40 H 0.153 0.847 41 H 0.170 0.830 42 H 0.174 0.826 43 H 0.115 0.885 44 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -13.699 7.788 -12.159 19.903 hybrid contribution 0.464 -0.275 0.957 1.099 sum -13.235 7.513 -11.201 18.896 Atomic orbital electron populations 1.21698 0.96466 1.00374 1.00024 1.21860 0.94246 0.98371 1.02263 1.20305 0.94376 0.89103 0.78806 0.97743 1.21337 0.90592 1.39667 1.06757 0.91465 1.25777 1.04008 0.93993 0.94482 1.70013 1.37357 1.38107 1.09846 0.85255 0.78027 0.77889 0.78702 1.19875 1.20295 1.18609 1.86450 1.35725 1.62850 1.42138 1.24028 0.79536 0.76167 0.90359 1.90609 1.55801 1.58995 1.37239 1.19377 0.92582 0.97367 0.91375 1.21923 0.98534 0.95273 1.03597 1.22009 1.04003 0.97779 0.96262 1.19083 0.92973 0.96722 0.97391 1.20863 0.96325 0.96188 0.96881 1.20199 0.89330 1.02685 0.99938 1.19983 0.85429 0.97676 0.99468 1.19803 0.88823 0.98193 0.95929 1.20135 0.87449 1.01207 1.02437 1.87311 1.13387 1.76210 1.46812 1.26126 0.90610 0.84364 0.89552 1.87316 1.15503 1.42970 1.78069 0.92276 0.94834 0.94350 0.93503 0.89768 0.92166 0.90832 0.88009 0.92210 0.92173 0.87750 0.90656 0.84701 0.83030 0.82606 0.88532 0.81596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.66 8.57 71.98 0.62 -5.04 16 2 C -0.13 -6.47 5.49 30.59 0.17 -6.31 16 3 C 0.23 12.16 2.25 29.85 0.07 12.23 16 4 H 0.00 0.29 7.16 -2.39 -0.02 0.27 16 5 C -0.55 -30.43 8.90 25.60 0.23 -30.20 16 6 H 0.07 3.66 7.81 -2.91 -0.02 3.64 16 7 C 0.02 0.93 5.29 84.66 0.45 1.38 16 8 N -0.92 -52.13 11.29 21.45 0.24 -51.88 16 9 Si 0.98 42.43 29.54 68.60 2.03 44.46 16 10 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 11 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 12 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 13 O -0.36 -16.36 9.55 -51.43 -0.49 -16.85 16 14 C 0.46 18.25 4.93 71.23 0.35 18.61 16 15 O -0.54 -24.55 12.46 21.96 0.27 -24.28 16 16 C -0.01 -0.17 0.80 -53.68 -0.04 -0.21 16 17 C -0.14 -3.23 8.19 71.98 0.59 -2.64 16 18 C -0.14 -3.32 7.04 71.98 0.51 -2.82 16 19 C -0.06 -1.69 4.33 -19.86 -0.09 -1.78 16 20 C -0.08 -2.33 8.13 22.27 0.18 -2.15 16 21 C -0.10 -2.64 10.06 22.34 0.22 -2.42 16 22 C 0.02 0.50 7.15 22.59 0.16 0.66 16 23 C 0.02 0.44 7.15 22.59 0.16 0.60 16 24 C -0.09 -2.41 9.00 22.34 0.20 -2.21 16 25 O -0.32 -7.52 11.40 -76.01 -0.87 -8.38 16 26 C 0.20 3.45 8.89 113.37 1.01 4.46 16 27 O -0.32 -7.59 11.40 -75.96 -0.87 -8.45 16 28 H 0.06 2.25 8.14 -2.38 -0.02 2.23 16 29 H 0.03 1.57 7.80 -2.39 -0.02 1.56 16 30 H 0.04 1.61 6.06 -2.39 -0.01 1.60 16 31 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 32 H 0.08 4.63 5.95 -2.38 -0.01 4.62 16 33 H 0.27 14.39 8.31 -92.71 -0.77 13.62 16 34 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.10 1.75 8.14 -2.39 -0.02 1.74 16 36 H 0.06 1.44 7.08 -2.38 -0.02 1.43 16 37 H 0.06 1.42 7.25 -2.38 -0.02 1.41 16 38 H 0.10 1.70 7.77 -2.39 -0.02 1.68 16 39 H 0.07 1.83 8.03 -2.39 -0.02 1.81 16 40 H 0.14 3.69 7.22 -2.91 -0.02 3.67 16 41 H 0.15 3.21 8.06 -2.91 -0.02 3.19 16 42 H 0.16 3.36 5.90 -2.91 -0.02 3.35 16 43 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 44 H 0.17 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -68.83 356.39 6.11 -62.71 By element: Atomic # 1 Polarization: 19.51 SS G_CDS: 1.01 Total: 20.52 kcal Atomic # 6 Polarization: -22.62 SS G_CDS: 4.78 Total: -17.84 kcal Atomic # 7 Polarization: -52.13 SS G_CDS: 0.24 Total: -51.88 kcal Atomic # 8 Polarization: -56.02 SS G_CDS: -1.95 Total: -57.97 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.46 kcal Total: -68.83 6.11 -62.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797145997.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.334 kcal (2) G-P(sol) polarization free energy of solvation -68.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds