Wall clock time and date at job start Tue Mar 31 2020 12:45:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52992 * 109.47215 * 2 1 4 4 C 1.53005 * 109.47215 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.46556 * 54.99958 * 4 3 2 6 6 O 1.45199 * 109.46888 * 295.00420 * 4 3 2 7 7 C 1.34802 * 117.00213 * 89.99960 * 6 4 3 8 8 O 1.21532 * 119.99811 * 359.97438 * 7 6 4 9 9 C 1.47279 * 120.00122 * 179.97438 * 7 6 4 10 10 C 1.39295 * 120.29057 * 356.75933 * 9 7 6 11 11 C 1.38202 * 120.08989 * 180.29474 * 10 9 7 12 12 C 1.38840 * 120.68091 * 359.44696 * 11 10 9 13 13 C 1.37600 * 120.58123 * 0.55488 * 12 11 10 14 14 C 1.40701 * 119.88915 * 359.72839 * 13 12 11 15 15 C 1.40867 * 120.33604 * 180.02562 * 14 13 12 16 16 H 1.07996 * 119.99756 * 141.77098 * 15 14 13 17 17 C 1.40298 * 119.99665 * 321.77609 * 15 14 13 18 18 N 1.30610 * 119.99768 * 173.11628 * 17 15 14 19 19 Si 1.86797 * 120.00085 * 353.12108 * 17 15 14 20 20 H 1.48495 * 109.47494 * 89.43199 * 19 17 15 21 21 H 1.48504 * 109.46900 * 209.43406 * 19 17 15 22 22 H 1.48506 * 109.46748 * 329.42999 * 19 17 15 23 23 C 1.50701 * 109.47240 * 175.00215 * 4 3 2 24 24 O 1.20823 * 120.00087 * 120.00009 * 23 4 3 25 25 O 1.34231 * 119.99935 * 300.00043 * 23 4 3 26 26 C 1.45198 * 117.00157 * 179.97438 * 25 23 4 27 27 C 1.52996 * 109.47064 * 180.02562 * 26 25 23 28 28 H 1.09005 * 109.46918 * 300.00038 * 1 2 3 29 29 H 1.08996 * 109.47081 * 59.99131 * 1 2 3 30 30 H 1.08992 * 109.47121 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46835 * 240.00417 * 2 1 3 32 32 H 1.08998 * 109.47152 * 120.00093 * 2 1 3 33 33 H 1.09005 * 109.47208 * 60.00140 * 3 2 1 34 34 H 1.09004 * 109.47467 * 300.00406 * 3 2 1 35 35 H 1.08000 * 119.95477 * 0.02562 * 10 9 7 36 36 H 1.07995 * 119.65539 * 179.72258 * 11 10 9 37 37 H 1.07999 * 119.70768 * 180.27771 * 12 11 10 38 38 H 1.08000 * 120.05677 * 179.74158 * 13 12 11 39 39 H 0.96996 * 120.00160 * 180.02562 * 18 17 15 40 40 H 1.08996 * 109.47168 * 300.00436 * 26 25 23 41 41 H 1.09003 * 109.46784 * 60.00385 * 26 25 23 42 42 H 1.09000 * 109.46731 * 180.02562 * 27 26 25 43 43 H 1.09002 * 109.47481 * 299.99732 * 27 26 25 44 44 H 1.08996 * 109.47444 * 60.00460 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 1 3.9330 0.8531 -0.8427 6 8 4.0546 0.8636 1.2397 7 6 4.2585 -0.4688 1.2547 8 8 4.0371 -1.1287 0.2585 9 6 4.7498 -1.1249 2.4784 10 6 5.0697 -0.3665 3.6022 11 6 5.5361 -0.9859 4.7462 12 6 5.6810 -2.3658 4.7959 13 6 5.3733 -3.1419 3.7021 14 6 4.9020 -2.5361 2.5228 15 6 4.5836 -3.3215 1.3976 16 1 3.7296 -3.0687 0.7868 17 6 5.3760 -4.4322 1.0707 18 7 5.0070 -5.2378 0.1111 19 14 6.9585 -4.7589 2.0077 20 1 6.6679 -5.6113 3.1884 21 1 7.9245 -5.4551 1.1203 22 1 7.5415 -3.4698 2.4593 23 6 4.0724 2.8578 -0.1244 24 8 4.7674 3.3303 0.7436 25 8 3.7477 3.5937 -1.1991 26 6 4.2663 4.9489 -1.2513 27 6 3.7938 5.6265 -2.5391 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 4.9572 0.7073 3.5780 36 1 5.7862 -0.3907 5.6119 37 1 6.0426 -2.8339 5.6995 38 1 5.4931 -4.2142 3.7487 39 1 5.5545 -6.0060 -0.1147 40 1 3.9026 5.5105 -0.3910 41 1 5.3559 4.9218 -1.2333 42 1 4.1835 6.6437 -2.5784 43 1 4.1573 5.0650 -3.3997 44 1 2.7043 5.6536 -2.5567 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000801819454.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:37 Heat of formation + Delta-G solvation = -163.129503 kcal Electronic energy + Delta-G solvation = -27467.072366 eV Core-core repulsion = 23542.215585 eV Total energy + Delta-G solvation = -3924.856781 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.71026 -39.58948 -37.71769 -36.62839 -35.65773 -34.46924 -33.69052 -32.01213 -30.59430 -30.55235 -29.56004 -25.66135 -25.19960 -23.50453 -22.63580 -21.55895 -21.14352 -20.60139 -19.71120 -17.85972 -17.57444 -17.00051 -16.75806 -16.59566 -15.73070 -15.59743 -15.16253 -14.47350 -14.17980 -14.12857 -13.83788 -13.71040 -13.26543 -13.20071 -13.02004 -12.68453 -12.56756 -12.41620 -12.11875 -12.04252 -11.89668 -11.69702 -11.49306 -11.41723 -11.04296 -11.00327 -10.79933 -10.67685 -10.54784 -10.39763 -10.33430 -10.25637 -9.87318 -9.82571 -9.36268 -8.96368 -7.91613 -7.70168 -7.01153 -4.61674 1.90079 2.16188 2.22447 2.56068 3.03377 3.11407 3.23336 3.59355 3.67344 3.88822 4.47360 4.50472 4.71222 4.77053 4.86946 5.04049 5.05552 5.22888 5.25990 5.37743 5.46669 5.54217 5.62561 5.70756 5.72889 5.87496 5.92925 5.93795 5.98284 6.02755 6.28246 6.30336 6.31595 6.46073 6.50981 6.66435 6.68719 6.99582 7.05368 7.21143 7.34448 7.56975 7.66284 7.73988 7.93141 8.32740 8.47635 8.68337 8.88977 9.96371 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.014292 B = 0.003860 C = 0.003625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1958.653383 B = 7251.363149 C = 7722.928433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.124 4.124 3 C -0.125 4.125 4 C 0.101 3.899 5 H 0.121 0.879 6 O -0.343 6.343 7 C 0.503 3.497 8 O -0.494 6.494 9 C -0.236 4.236 10 C -0.019 4.019 11 C -0.253 4.253 12 C -0.059 4.059 13 C -0.226 4.226 14 C 0.120 3.880 15 C -0.397 4.397 16 H 0.118 0.882 17 C 0.080 3.920 18 N -0.789 5.789 19 Si 0.907 3.093 20 H -0.266 1.266 21 H -0.288 1.288 22 H -0.242 1.242 23 C 0.467 3.533 24 O -0.487 6.487 25 O -0.355 6.355 26 C 0.061 3.939 27 C -0.152 4.152 28 H 0.050 0.950 29 H 0.050 0.950 30 H 0.056 0.944 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.086 0.914 35 H 0.110 0.890 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.109 0.891 39 H 0.289 0.711 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.079 0.921 43 H 0.067 0.933 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.618 13.181 -2.558 13.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.162 4.162 3 C -0.162 4.162 4 C 0.044 3.956 5 H 0.138 0.862 6 O -0.262 6.262 7 C 0.353 3.647 8 O -0.383 6.383 9 C -0.239 4.239 10 C -0.038 4.038 11 C -0.273 4.273 12 C -0.077 4.077 13 C -0.245 4.245 14 C 0.116 3.884 15 C -0.424 4.424 16 H 0.136 0.864 17 C -0.141 4.141 18 N -0.412 5.412 19 Si 0.733 3.267 20 H -0.192 1.192 21 H -0.215 1.215 22 H -0.165 1.165 23 C 0.308 3.692 24 O -0.372 6.372 25 O -0.272 6.272 26 C -0.013 4.013 27 C -0.209 4.209 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.105 0.895 35 H 0.128 0.872 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.127 0.873 39 H 0.099 0.901 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.098 0.902 43 H 0.086 0.914 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.477 12.953 -2.840 13.709 hybrid contribution 0.846 -0.133 0.324 0.915 sum -2.631 12.820 -2.516 13.327 Atomic orbital electron populations 1.21741 0.95852 1.01797 1.01114 1.21611 0.95521 0.94806 1.04230 1.21993 0.91003 0.99682 1.03543 1.21771 0.95603 0.87909 0.90344 0.86191 1.86706 1.78713 1.26105 1.34707 1.21358 0.75441 0.78390 0.89525 1.90827 1.48757 1.63285 1.35381 1.18639 1.20307 0.92755 0.92194 1.21038 0.92465 0.98267 0.91999 1.20400 1.13858 0.94317 0.98678 1.20827 0.95992 0.93988 0.96921 1.21150 1.10917 0.98488 0.93950 1.17502 0.88333 0.89804 0.92769 1.20036 1.10917 1.03918 1.07529 0.86423 1.26327 1.00011 0.93315 0.94465 1.69528 1.37036 1.10533 1.24140 0.86387 0.80707 0.80653 0.78923 1.19187 1.21497 1.16491 1.23376 0.77991 0.88343 0.79494 1.90682 1.34404 1.72043 1.40049 1.86479 1.70131 1.26984 1.43649 1.23049 0.99293 0.79207 0.99704 1.21804 1.02710 1.00115 0.96246 0.93084 0.93059 0.92444 0.90578 0.91124 0.90758 0.89509 0.87170 0.88125 0.88249 0.87347 0.90053 0.91128 0.91125 0.90242 0.91364 0.91398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.91 37.16 0.37 -1.52 16 2 C -0.12 -1.95 4.58 -26.73 -0.12 -2.07 16 3 C -0.12 -1.76 4.89 -26.73 -0.13 -1.89 16 4 C 0.10 1.69 2.78 -27.88 -0.08 1.61 16 5 H 0.12 2.04 7.16 -51.93 -0.37 1.67 16 6 O -0.34 -6.96 8.61 -47.47 -0.41 -7.36 16 7 C 0.50 11.51 6.31 34.41 0.22 11.73 16 8 O -0.49 -12.02 10.82 -19.29 -0.21 -12.23 16 9 C -0.24 -5.63 5.92 -104.39 -0.62 -6.25 16 10 C -0.02 -0.41 9.60 -39.20 -0.38 -0.79 16 11 C -0.25 -5.10 10.03 -39.37 -0.39 -5.49 16 12 C -0.06 -1.21 10.01 -39.59 -0.40 -1.60 16 13 C -0.23 -5.21 6.98 -38.88 -0.27 -5.49 16 14 C 0.12 3.02 5.03 -106.53 -0.54 2.48 16 15 C -0.40 -10.66 8.12 -37.81 -0.31 -10.97 16 16 H 0.12 3.42 6.28 -52.49 -0.33 3.09 16 17 C 0.08 2.06 5.50 -17.30 -0.10 1.96 16 18 N -0.79 -20.65 13.92 55.57 0.77 -19.88 16 19 Si 0.91 20.20 24.50 -169.99 -4.16 16.04 16 20 H -0.27 -5.60 6.68 56.52 0.38 -5.22 16 21 H -0.29 -6.20 7.11 56.52 0.40 -5.80 16 22 H -0.24 -5.56 6.74 56.52 0.38 -5.18 16 23 C 0.47 7.47 7.33 36.01 0.26 7.73 16 24 O -0.49 -9.10 16.25 -25.40 -0.41 -9.51 16 25 O -0.35 -4.65 10.03 -39.26 -0.39 -5.05 16 26 C 0.06 0.62 6.19 37.16 0.23 0.85 16 27 C -0.15 -1.07 10.29 37.16 0.38 -0.69 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.08 1.28 7.79 -51.93 -0.40 0.87 16 32 H 0.07 1.33 6.06 -51.93 -0.31 1.01 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.09 1.02 7.99 -51.93 -0.42 0.60 16 35 H 0.11 2.19 7.61 -52.49 -0.40 1.79 16 36 H 0.10 1.74 8.06 -52.49 -0.42 1.32 16 37 H 0.10 1.72 8.06 -52.49 -0.42 1.30 16 38 H 0.11 2.43 4.93 -52.49 -0.26 2.17 16 39 H 0.29 6.80 8.29 -40.82 -0.34 6.46 16 40 H 0.07 0.70 8.13 -51.93 -0.42 0.27 16 41 H 0.07 0.73 8.13 -51.93 -0.42 0.30 16 42 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 LS Contribution 363.63 15.07 5.48 5.48 Total: -1.00 -29.41 363.63 -7.52 -36.93 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -6.32 Total: 5.97 kcal Atomic # 6 Polarization: -8.53 SS G_CDS: -1.86 Total: -10.39 kcal Atomic # 7 Polarization: -20.65 SS G_CDS: 0.77 Total: -19.88 kcal Atomic # 8 Polarization: -32.73 SS G_CDS: -1.42 Total: -34.15 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -4.16 Total: 16.04 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -29.41 -7.52 -36.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000801819454.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.198 kcal (2) G-P(sol) polarization free energy of solvation -29.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds