Wall clock time and date at job start Tue Mar 31 2020 12:45:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52992 * 109.47215 * 2 1 4 4 C 1.53005 * 109.47215 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.46556 * 54.99958 * 4 3 2 6 6 O 1.45199 * 109.46888 * 295.00420 * 4 3 2 7 7 C 1.34802 * 117.00213 * 89.99960 * 6 4 3 8 8 O 1.21532 * 119.99811 * 359.97438 * 7 6 4 9 9 C 1.47279 * 120.00122 * 179.97438 * 7 6 4 10 10 C 1.39295 * 120.29057 * 356.75933 * 9 7 6 11 11 C 1.38202 * 120.08989 * 180.29474 * 10 9 7 12 12 C 1.38840 * 120.68091 * 359.44696 * 11 10 9 13 13 C 1.37600 * 120.58123 * 0.55488 * 12 11 10 14 14 C 1.40701 * 119.88915 * 359.72839 * 13 12 11 15 15 C 1.40867 * 120.33604 * 180.02562 * 14 13 12 16 16 H 1.07996 * 119.99756 * 141.77098 * 15 14 13 17 17 C 1.40298 * 119.99665 * 321.77609 * 15 14 13 18 18 N 1.30610 * 119.99768 * 173.11628 * 17 15 14 19 19 Si 1.86797 * 120.00085 * 353.12108 * 17 15 14 20 20 H 1.48495 * 109.47494 * 89.43199 * 19 17 15 21 21 H 1.48504 * 109.46900 * 209.43406 * 19 17 15 22 22 H 1.48506 * 109.46748 * 329.42999 * 19 17 15 23 23 C 1.50701 * 109.47240 * 175.00215 * 4 3 2 24 24 O 1.20823 * 120.00087 * 120.00009 * 23 4 3 25 25 O 1.34231 * 119.99935 * 300.00043 * 23 4 3 26 26 C 1.45198 * 117.00157 * 179.97438 * 25 23 4 27 27 C 1.52996 * 109.47064 * 180.02562 * 26 25 23 28 28 H 1.09005 * 109.46918 * 300.00038 * 1 2 3 29 29 H 1.08996 * 109.47081 * 59.99131 * 1 2 3 30 30 H 1.08992 * 109.47121 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46835 * 240.00417 * 2 1 3 32 32 H 1.08998 * 109.47152 * 120.00093 * 2 1 3 33 33 H 1.09005 * 109.47208 * 60.00140 * 3 2 1 34 34 H 1.09004 * 109.47467 * 300.00406 * 3 2 1 35 35 H 1.08000 * 119.95477 * 0.02562 * 10 9 7 36 36 H 1.07995 * 119.65539 * 179.72258 * 11 10 9 37 37 H 1.07999 * 119.70768 * 180.27771 * 12 11 10 38 38 H 1.08000 * 120.05677 * 179.74158 * 13 12 11 39 39 H 0.96996 * 120.00160 * 180.02562 * 18 17 15 40 40 H 1.08996 * 109.47168 * 300.00436 * 26 25 23 41 41 H 1.09003 * 109.46784 * 60.00385 * 26 25 23 42 42 H 1.09000 * 109.46731 * 180.02562 * 27 26 25 43 43 H 1.09002 * 109.47481 * 299.99732 * 27 26 25 44 44 H 1.08996 * 109.47444 * 60.00460 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 1 3.9330 0.8531 -0.8427 6 8 4.0546 0.8636 1.2397 7 6 4.2585 -0.4688 1.2547 8 8 4.0371 -1.1287 0.2585 9 6 4.7498 -1.1249 2.4784 10 6 5.0697 -0.3665 3.6022 11 6 5.5361 -0.9859 4.7462 12 6 5.6810 -2.3658 4.7959 13 6 5.3733 -3.1419 3.7021 14 6 4.9020 -2.5361 2.5228 15 6 4.5836 -3.3215 1.3976 16 1 3.7296 -3.0687 0.7868 17 6 5.3760 -4.4322 1.0707 18 7 5.0070 -5.2378 0.1111 19 14 6.9585 -4.7589 2.0077 20 1 6.6679 -5.6113 3.1884 21 1 7.9245 -5.4551 1.1203 22 1 7.5415 -3.4698 2.4593 23 6 4.0724 2.8578 -0.1244 24 8 4.7674 3.3303 0.7436 25 8 3.7477 3.5937 -1.1991 26 6 4.2663 4.9489 -1.2513 27 6 3.7938 5.6265 -2.5391 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 4.9572 0.7073 3.5780 36 1 5.7862 -0.3907 5.6119 37 1 6.0426 -2.8339 5.6995 38 1 5.4931 -4.2142 3.7487 39 1 5.5545 -6.0060 -0.1147 40 1 3.9026 5.5105 -0.3910 41 1 5.3559 4.9218 -1.2333 42 1 4.1835 6.6437 -2.5784 43 1 4.1573 5.0650 -3.3997 44 1 2.7043 5.6536 -2.5567 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000801819454.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:36 Heat of formation + Delta-G solvation = -177.925030 kcal Electronic energy + Delta-G solvation = -27467.713949 eV Core-core repulsion = 23542.215585 eV Total energy + Delta-G solvation = -3925.498364 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.08508 -41.15530 -39.41069 -37.92134 -37.26609 -35.87511 -35.50876 -32.86418 -32.41282 -32.13919 -30.91120 -27.44062 -26.42435 -24.86772 -23.89394 -23.21888 -22.37486 -21.98593 -21.37540 -19.53074 -19.18322 -18.50064 -18.15697 -17.81515 -17.33894 -17.09328 -16.72964 -15.88762 -15.78081 -15.53697 -15.32763 -15.19596 -14.65575 -14.49898 -14.41240 -13.99038 -13.92601 -13.72049 -13.62954 -13.30933 -13.01029 -12.95438 -12.81534 -12.71627 -12.60342 -12.50242 -12.31042 -12.25713 -12.09942 -11.73088 -11.67007 -11.62218 -11.58601 -11.25996 -11.14359 -10.78833 -9.66296 -9.50937 -8.88612 -6.57003 0.13248 0.78608 0.87477 0.93622 1.24553 1.36097 1.46022 1.89639 2.08349 2.16177 2.63229 3.34442 3.40407 3.59973 3.73529 3.95411 3.98806 4.04291 4.15193 4.20542 4.25935 4.32160 4.38922 4.51078 4.60987 4.70622 4.72078 4.78681 4.81426 4.85776 4.91586 4.92112 5.06364 5.19201 5.21016 5.25344 5.30063 5.32889 5.39900 5.47055 5.62934 5.81376 5.87698 6.18325 6.37663 6.49361 6.62764 6.71124 7.11454 8.15649 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.014292 B = 0.003860 C = 0.003625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1958.653383 B = 7251.363149 C = 7722.928433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.122 4.122 3 C -0.114 4.114 4 C 0.091 3.909 5 H 0.112 0.888 6 O -0.346 6.346 7 C 0.505 3.495 8 O -0.517 6.517 9 C -0.258 4.258 10 C -0.027 4.027 11 C -0.232 4.232 12 C -0.050 4.050 13 C -0.244 4.244 14 C 0.109 3.891 15 C -0.438 4.438 16 H 0.074 0.926 17 C 0.042 3.958 18 N -0.837 5.837 19 Si 0.961 3.039 20 H -0.242 1.242 21 H -0.279 1.279 22 H -0.252 1.252 23 C 0.478 3.522 24 O -0.516 6.516 25 O -0.347 6.347 26 C 0.050 3.950 27 C -0.145 4.145 28 H 0.062 0.938 29 H 0.076 0.924 30 H 0.049 0.951 31 H 0.055 0.945 32 H 0.030 0.970 33 H 0.084 0.916 34 H 0.119 0.881 35 H 0.126 0.874 36 H 0.143 0.857 37 H 0.144 0.856 38 H 0.113 0.887 39 H 0.296 0.704 40 H 0.076 0.924 41 H 0.068 0.932 42 H 0.104 0.896 43 H 0.067 0.933 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.097 15.509 -0.650 15.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.160 4.160 3 C -0.151 4.151 4 C 0.034 3.966 5 H 0.129 0.871 6 O -0.265 6.265 7 C 0.355 3.645 8 O -0.408 6.408 9 C -0.260 4.260 10 C -0.045 4.045 11 C -0.251 4.251 12 C -0.068 4.068 13 C -0.262 4.262 14 C 0.105 3.895 15 C -0.466 4.466 16 H 0.092 0.908 17 C -0.174 4.174 18 N -0.463 5.463 19 Si 0.784 3.216 20 H -0.166 1.166 21 H -0.206 1.206 22 H -0.176 1.176 23 C 0.321 3.679 24 O -0.404 6.404 25 O -0.264 6.264 26 C -0.023 4.023 27 C -0.202 4.202 28 H 0.081 0.919 29 H 0.095 0.905 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.049 0.951 33 H 0.103 0.897 34 H 0.138 0.862 35 H 0.144 0.856 36 H 0.161 0.839 37 H 0.162 0.838 38 H 0.131 0.869 39 H 0.107 0.893 40 H 0.094 0.906 41 H 0.086 0.914 42 H 0.122 0.878 43 H 0.086 0.914 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.979 15.302 -0.939 15.618 hybrid contribution 0.631 -0.544 -0.201 0.857 sum -2.348 14.758 -1.141 14.987 Atomic orbital electron populations 1.21701 0.93245 1.01960 1.02958 1.21519 0.97788 0.95348 1.01300 1.21991 0.88816 0.98762 1.05542 1.22091 0.97487 0.88436 0.88568 0.87055 1.86632 1.78624 1.24609 1.36594 1.21355 0.74835 0.79108 0.89170 1.90826 1.49571 1.64118 1.36259 1.19037 1.20444 0.93023 0.93535 1.21292 0.92442 0.99041 0.91769 1.20960 1.10463 0.94660 0.99030 1.21330 0.93950 0.94150 0.97405 1.21309 1.11695 0.99212 0.94031 1.17725 0.88418 0.90324 0.93032 1.19819 1.11647 1.06261 1.08916 0.90773 1.27007 1.02467 0.92773 0.95124 1.69570 1.38794 1.11805 1.26139 0.85582 0.77098 0.80249 0.78705 1.16590 1.20561 1.17620 1.23048 0.77243 0.87913 0.79715 1.90667 1.35814 1.72645 1.41324 1.86478 1.69708 1.28376 1.41873 1.23460 0.99398 0.77577 1.01819 1.21840 1.03194 1.00916 0.94217 0.91863 0.90476 0.93223 0.92631 0.95119 0.89743 0.86235 0.85627 0.83917 0.83795 0.86931 0.89323 0.90569 0.91372 0.87776 0.91389 0.90744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.56 9.91 71.98 0.71 -2.85 16 2 C -0.12 -3.99 4.58 30.59 0.14 -3.85 16 3 C -0.11 -3.16 4.89 30.59 0.15 -3.01 16 4 C 0.09 3.09 2.78 29.85 0.08 3.18 16 5 H 0.11 3.99 7.16 -2.39 -0.02 3.98 16 6 O -0.35 -14.38 8.61 -50.73 -0.44 -14.82 16 7 C 0.51 24.28 6.31 70.20 0.44 24.72 16 8 O -0.52 -27.25 10.82 19.73 0.21 -27.04 16 9 C -0.26 -12.53 5.92 -19.71 -0.12 -12.64 16 10 C -0.03 -1.12 9.60 22.52 0.22 -0.90 16 11 C -0.23 -8.37 10.03 22.41 0.22 -8.15 16 12 C -0.05 -1.86 10.01 22.26 0.22 -1.64 16 13 C -0.24 -10.92 6.98 22.72 0.16 -10.77 16 14 C 0.11 5.61 5.03 -21.10 -0.11 5.50 16 15 C -0.44 -25.13 8.12 23.41 0.19 -24.94 16 16 H 0.07 4.77 6.28 -2.91 -0.02 4.75 16 17 C 0.04 2.27 5.50 85.38 0.47 2.74 16 18 N -0.84 -46.54 13.92 21.88 0.30 -46.23 16 19 Si 0.96 42.00 24.50 68.60 1.68 43.68 16 20 H -0.24 -9.48 6.68 99.48 0.66 -8.82 16 21 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 22 H -0.25 -11.30 6.74 99.48 0.67 -10.63 16 23 C 0.48 15.06 7.33 71.24 0.52 15.58 16 24 O -0.52 -19.08 16.25 28.34 0.46 -18.62 16 25 O -0.35 -8.63 10.03 -51.43 -0.52 -9.14 16 26 C 0.05 0.94 6.19 71.98 0.45 1.38 16 27 C -0.14 -1.66 10.29 71.98 0.74 -0.92 16 28 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 29 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.05 2.01 7.79 -2.39 -0.02 1.99 16 32 H 0.03 1.23 6.06 -2.39 -0.01 1.22 16 33 H 0.08 2.20 8.14 -2.38 -0.02 2.18 16 34 H 0.12 2.55 7.99 -2.38 -0.02 2.53 16 35 H 0.13 4.74 7.61 -2.91 -0.02 4.72 16 36 H 0.14 4.02 8.06 -2.91 -0.02 4.00 16 37 H 0.14 4.11 8.06 -2.91 -0.02 4.08 16 38 H 0.11 4.89 4.93 -2.91 -0.01 4.88 16 39 H 0.30 14.69 8.29 -92.71 -0.77 13.92 16 40 H 0.08 1.36 8.13 -2.39 -0.02 1.34 16 41 H 0.07 1.32 8.13 -2.39 -0.02 1.30 16 42 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 43 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.07 0.78 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -68.84 363.63 7.13 -61.71 By element: Atomic # 1 Polarization: 26.09 SS G_CDS: 0.93 Total: 27.02 kcal Atomic # 6 Polarization: -21.06 SS G_CDS: 4.50 Total: -16.56 kcal Atomic # 7 Polarization: -46.54 SS G_CDS: 0.30 Total: -46.23 kcal Atomic # 8 Polarization: -69.34 SS G_CDS: -0.28 Total: -69.62 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 1.68 Total: 43.68 kcal Total: -68.84 7.13 -61.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000801819454.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.219 kcal (2) G-P(sol) polarization free energy of solvation -68.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds