Wall clock time and date at job start Tue Mar 31 2020 12:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47493 * 2 1 4 4 C 1.52992 * 109.47336 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.47768 * 54.99725 * 4 3 2 6 6 O 1.45207 * 109.47174 * 294.99880 * 4 3 2 7 7 C 1.34709 * 116.99887 * 89.99897 * 6 4 3 8 8 O 1.21473 * 120.00158 * 0.02562 * 7 6 4 9 9 C 1.47764 * 119.99822 * 180.02562 * 7 6 4 10 10 C 1.39965 * 120.03624 * 359.72570 * 9 7 6 11 11 C 1.38315 * 120.35872 * 179.75950 * 10 9 7 12 12 C 1.37756 * 120.41244 * 0.51946 * 11 10 9 13 13 C 1.40751 * 120.05285 * 359.73799 * 12 11 10 14 14 C 1.41447 * 120.17389 * 180.02562 * 13 12 11 15 15 H 1.08004 * 119.99544 * 150.17487 * 14 13 12 16 16 C 1.39931 * 120.00444 * 330.18232 * 14 13 12 17 17 N 1.30824 * 120.00409 * 161.72628 * 16 14 13 18 18 Si 1.86805 * 119.99681 * 341.72823 * 16 14 13 19 19 H 1.48493 * 109.47184 * 95.41388 * 18 16 14 20 20 H 1.48502 * 109.47089 * 215.41571 * 18 16 14 21 21 H 1.48503 * 109.47134 * 335.40878 * 18 16 14 22 22 C 1.39053 * 120.02924 * 179.97438 * 9 7 6 23 23 C 1.50697 * 109.47285 * 175.00291 * 4 3 2 24 24 O 1.20827 * 120.00284 * 120.00262 * 23 4 3 25 25 O 1.34231 * 119.99595 * 299.72199 * 23 4 3 26 26 C 1.45206 * 116.99779 * 180.27522 * 25 23 4 27 27 C 1.52997 * 109.46795 * 180.02562 * 26 25 23 28 28 H 1.09000 * 109.47115 * 59.99835 * 1 2 3 29 29 H 1.09001 * 109.47422 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47069 * 299.99861 * 1 2 3 31 31 H 1.09005 * 109.47069 * 240.00139 * 2 1 3 32 32 H 1.09000 * 109.47115 * 120.00164 * 2 1 3 33 33 H 1.09005 * 109.46849 * 60.00005 * 3 2 1 34 34 H 1.09000 * 109.47074 * 300.00190 * 3 2 1 35 35 H 1.08001 * 119.81577 * 359.97438 * 10 9 7 36 36 H 1.07991 * 119.79313 * 180.25457 * 11 10 9 37 37 H 1.08002 * 119.97411 * 179.75831 * 12 11 10 38 38 H 0.97002 * 120.00037 * 179.97438 * 17 16 14 39 39 H 1.08000 * 120.20540 * 359.95881 * 22 9 7 40 40 H 1.08993 * 109.47136 * 300.00343 * 26 25 23 41 41 H 1.09002 * 109.46884 * 59.99978 * 26 25 23 42 42 H 1.08995 * 109.47548 * 59.99859 * 27 26 25 43 43 H 1.09005 * 109.46703 * 180.02562 * 27 26 25 44 44 H 1.09002 * 109.47236 * 299.99906 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 3.9331 0.8531 -0.8426 6 8 4.0546 0.8637 1.2398 7 6 4.2584 -0.4678 1.2549 8 8 4.0378 -1.1273 0.2589 9 6 4.7502 -1.1261 2.4830 10 6 5.0100 -0.3661 3.6292 11 6 5.4659 -0.9761 4.7839 12 6 5.6796 -2.3366 4.8162 13 6 5.4291 -3.1168 3.6718 14 6 5.6471 -4.5140 3.7023 15 1 5.0519 -5.1670 3.0811 16 6 6.6338 -5.0502 4.5372 17 7 6.6101 -6.3215 4.8451 18 14 7.9847 -3.9507 5.2122 19 1 7.6071 -3.4783 6.5683 20 1 9.2540 -4.7175 5.2907 21 1 8.1671 -2.7823 4.3138 22 6 4.9603 -2.5006 2.4994 23 6 4.0724 2.8578 -0.1244 24 8 4.7675 3.3303 0.7437 25 8 3.7522 3.5917 -1.2018 26 6 4.2762 4.9448 -1.2570 27 6 3.8084 5.6205 -2.5475 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.6768 1.9563 0.8900 34 1 1.6768 1.9563 -0.8900 35 1 4.8504 0.7019 3.6130 36 1 5.6595 -0.3814 5.6643 37 1 6.0394 -2.8050 5.7204 38 1 7.2943 -6.6932 5.4235 39 1 4.7644 -3.0907 1.6163 40 1 3.9132 5.5103 -0.3989 41 1 5.3656 4.9136 -1.2369 42 1 2.7191 5.6517 -2.5671 43 1 4.2022 6.6361 -2.5891 44 1 4.1712 5.0551 -3.4058 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000801828078.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:44 Heat of formation + Delta-G solvation = -168.322184 kcal Electronic energy + Delta-G solvation = -26724.887331 eV Core-core repulsion = 22799.805378 eV Total energy + Delta-G solvation = -3925.081953 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.02218 -40.02575 -37.84464 -36.90795 -36.18726 -34.81704 -33.72364 -32.17106 -30.97793 -30.27830 -29.87222 -25.65764 -25.27863 -24.03240 -23.05679 -21.44514 -21.15777 -20.73264 -20.30569 -18.38433 -17.55114 -17.33407 -16.89385 -16.52648 -16.06025 -16.00011 -15.19229 -14.72243 -14.67741 -14.42931 -13.91069 -13.79287 -13.51006 -13.20399 -13.12889 -12.90275 -12.77376 -12.67362 -12.24063 -12.11505 -12.05496 -11.94373 -11.75131 -11.62589 -11.31183 -11.12686 -10.87856 -10.83715 -10.73607 -10.67168 -10.56443 -10.24081 -10.14361 -9.91974 -9.72115 -9.28197 -8.01171 -7.82909 -7.04104 -4.59797 1.59217 1.91025 1.96835 2.47088 3.02867 3.12647 3.17191 3.20542 3.31006 3.89906 4.26269 4.39053 4.54123 4.59595 4.63672 4.72927 4.91258 4.93184 5.07519 5.22761 5.26419 5.32703 5.41615 5.43004 5.54529 5.60559 5.68770 5.73312 5.87364 6.05592 6.12352 6.13457 6.15200 6.26345 6.33351 6.54378 6.58998 6.60397 6.90050 7.12848 7.34882 7.44746 7.51530 7.67400 7.83439 8.15891 8.22808 8.45343 8.66083 9.97959 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.018674 B = 0.003024 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.046662 B = 9258.491685 C =10155.605083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C -0.128 4.128 4 C 0.098 3.902 5 H 0.123 0.877 6 O -0.327 6.327 7 C 0.516 3.484 8 O -0.510 6.510 9 C -0.096 4.096 10 C -0.189 4.189 11 C -0.089 4.089 12 C -0.210 4.210 13 C 0.078 3.922 14 C -0.443 4.443 15 H 0.094 0.906 16 C 0.084 3.916 17 N -0.802 5.802 18 Si 0.908 3.092 19 H -0.268 1.268 20 H -0.288 1.288 21 H -0.243 1.243 22 C -0.131 4.131 23 C 0.466 3.534 24 O -0.482 6.482 25 O -0.354 6.354 26 C 0.061 3.939 27 C -0.152 4.152 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.092 0.908 35 H 0.111 0.889 36 H 0.103 0.897 37 H 0.106 0.894 38 H 0.287 0.713 39 H 0.118 0.882 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.067 0.933 43 H 0.080 0.920 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.631 17.669 -10.078 21.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.163 4.163 3 C -0.165 4.165 4 C 0.041 3.959 5 H 0.140 0.860 6 O -0.245 6.245 7 C 0.363 3.637 8 O -0.399 6.399 9 C -0.097 4.097 10 C -0.208 4.208 11 C -0.107 4.107 12 C -0.229 4.229 13 C 0.075 3.925 14 C -0.471 4.471 15 H 0.112 0.888 16 C -0.136 4.136 17 N -0.426 5.426 18 Si 0.734 3.266 19 H -0.194 1.194 20 H -0.215 1.215 21 H -0.166 1.166 22 C -0.151 4.151 23 C 0.307 3.693 24 O -0.367 6.367 25 O -0.272 6.272 26 C -0.012 4.012 27 C -0.209 4.209 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.093 0.907 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.110 0.890 35 H 0.129 0.871 36 H 0.121 0.879 37 H 0.124 0.876 38 H 0.097 0.903 39 H 0.136 0.864 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.086 0.914 43 H 0.099 0.901 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.402 17.399 -10.038 21.082 hybrid contribution 0.778 0.441 0.402 0.981 sum -5.624 17.840 -9.635 21.041 Atomic orbital electron populations 1.21745 0.95424 1.01975 1.01485 1.21625 0.96020 0.94854 1.03759 1.22035 0.90576 0.99752 1.04161 1.21913 0.95976 0.88500 0.89477 0.85975 1.86720 1.77606 1.24862 1.35271 1.21887 0.73433 0.79129 0.89211 1.90774 1.49064 1.64542 1.35535 1.18697 1.06720 0.93852 0.90475 1.20672 1.08610 0.98454 0.93073 1.20596 0.98873 0.94531 0.96730 1.21290 1.09371 0.94125 0.98149 1.17637 0.91198 0.93593 0.90052 1.19472 1.16457 0.90635 1.20548 0.88761 1.26146 0.98936 0.95473 0.93002 1.69682 1.31815 1.14125 1.26981 0.86358 0.78961 0.80985 0.80337 1.19425 1.21527 1.16627 1.21264 1.04586 0.91222 0.98026 1.23173 0.78186 0.88177 0.79761 1.90717 1.34107 1.71861 1.40007 1.86465 1.70096 1.27396 1.43200 1.23089 0.99305 0.78976 0.99852 1.21811 1.02768 1.00226 0.96095 0.92824 0.92353 0.92805 0.90677 0.91486 0.90306 0.89002 0.87061 0.87852 0.87619 0.90254 0.86369 0.90984 0.91000 0.91359 0.90101 0.91348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.91 37.16 0.37 -1.17 16 2 C -0.13 -1.58 4.59 -26.73 -0.12 -1.71 16 3 C -0.13 -1.47 4.89 -26.73 -0.13 -1.60 16 4 C 0.10 1.38 2.78 -27.89 -0.08 1.30 16 5 H 0.12 1.66 7.16 -51.93 -0.37 1.29 16 6 O -0.33 -5.77 8.59 -47.21 -0.41 -6.17 16 7 C 0.52 10.09 6.35 34.62 0.22 10.31 16 8 O -0.51 -10.17 13.52 -19.24 -0.26 -10.43 16 9 C -0.10 -2.08 5.87 -105.05 -0.62 -2.70 16 10 C -0.19 -3.91 9.62 -38.91 -0.37 -4.28 16 11 C -0.09 -1.86 10.01 -39.73 -0.40 -2.26 16 12 C -0.21 -4.86 7.17 -38.81 -0.28 -5.14 16 13 C 0.08 1.93 5.10 -106.87 -0.55 1.38 16 14 C -0.44 -11.65 9.57 -37.73 -0.36 -12.01 16 15 H 0.09 2.59 8.06 -52.48 -0.42 2.17 16 16 C 0.08 2.14 5.40 -17.35 -0.09 2.05 16 17 N -0.80 -20.83 13.93 55.55 0.77 -20.06 16 18 Si 0.91 20.11 24.52 -169.99 -4.17 15.95 16 19 H -0.27 -5.71 6.71 56.52 0.38 -5.33 16 20 H -0.29 -6.18 7.11 56.52 0.40 -5.78 16 21 H -0.24 -5.54 6.87 56.52 0.39 -5.15 16 22 C -0.13 -3.07 9.34 -38.43 -0.36 -3.43 16 23 C 0.47 6.47 7.33 36.00 0.26 6.74 16 24 O -0.48 -8.16 16.25 -25.41 -0.41 -8.57 16 25 O -0.35 -3.95 10.04 -39.26 -0.39 -4.35 16 26 C 0.06 0.53 6.19 37.16 0.23 0.76 16 27 C -0.15 -0.87 10.29 37.16 0.38 -0.48 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.98 7.79 -51.93 -0.40 0.58 16 32 H 0.07 1.04 6.06 -51.93 -0.31 0.72 16 33 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.09 0.85 8.00 -51.93 -0.42 0.43 16 35 H 0.11 2.13 7.59 -52.49 -0.40 1.73 16 36 H 0.10 1.84 8.06 -52.49 -0.42 1.42 16 37 H 0.11 2.41 4.72 -52.49 -0.25 2.16 16 38 H 0.29 6.73 8.30 -40.82 -0.34 6.39 16 39 H 0.12 2.73 7.64 -52.49 -0.40 2.33 16 40 H 0.07 0.61 8.13 -51.93 -0.42 0.19 16 41 H 0.07 0.63 8.13 -51.93 -0.42 0.21 16 42 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 43 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 LS Contribution 368.56 15.07 5.55 5.55 Total: -1.00 -28.76 368.56 -7.58 -36.34 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -6.37 Total: 3.96 kcal Atomic # 6 Polarization: -10.34 SS G_CDS: -1.89 Total: -12.23 kcal Atomic # 7 Polarization: -20.83 SS G_CDS: 0.77 Total: -20.06 kcal Atomic # 8 Polarization: -28.05 SS G_CDS: -1.47 Total: -29.52 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -4.17 Total: 15.95 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -28.76 -7.58 -36.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000801828078.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.983 kcal (2) G-P(sol) polarization free energy of solvation -28.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds