Wall clock time and date at job start Tue Mar 31 2020 12:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47493 * 2 1 4 4 C 1.52992 * 109.47336 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.47768 * 54.99725 * 4 3 2 6 6 O 1.45207 * 109.47174 * 294.99880 * 4 3 2 7 7 C 1.34709 * 116.99887 * 89.99897 * 6 4 3 8 8 O 1.21473 * 120.00158 * 0.02562 * 7 6 4 9 9 C 1.47764 * 119.99822 * 180.02562 * 7 6 4 10 10 C 1.39965 * 120.03624 * 359.72570 * 9 7 6 11 11 C 1.38315 * 120.35872 * 179.75950 * 10 9 7 12 12 C 1.37756 * 120.41244 * 0.51946 * 11 10 9 13 13 C 1.40751 * 120.05285 * 359.73799 * 12 11 10 14 14 C 1.41447 * 120.17389 * 180.02562 * 13 12 11 15 15 H 1.08004 * 119.99544 * 150.17487 * 14 13 12 16 16 C 1.39931 * 120.00444 * 330.18232 * 14 13 12 17 17 N 1.30824 * 120.00409 * 161.72628 * 16 14 13 18 18 Si 1.86805 * 119.99681 * 341.72823 * 16 14 13 19 19 H 1.48493 * 109.47184 * 95.41388 * 18 16 14 20 20 H 1.48502 * 109.47089 * 215.41571 * 18 16 14 21 21 H 1.48503 * 109.47134 * 335.40878 * 18 16 14 22 22 C 1.39053 * 120.02924 * 179.97438 * 9 7 6 23 23 C 1.50697 * 109.47285 * 175.00291 * 4 3 2 24 24 O 1.20827 * 120.00284 * 120.00262 * 23 4 3 25 25 O 1.34231 * 119.99595 * 299.72199 * 23 4 3 26 26 C 1.45206 * 116.99779 * 180.27522 * 25 23 4 27 27 C 1.52997 * 109.46795 * 180.02562 * 26 25 23 28 28 H 1.09000 * 109.47115 * 59.99835 * 1 2 3 29 29 H 1.09001 * 109.47422 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47069 * 299.99861 * 1 2 3 31 31 H 1.09005 * 109.47069 * 240.00139 * 2 1 3 32 32 H 1.09000 * 109.47115 * 120.00164 * 2 1 3 33 33 H 1.09005 * 109.46849 * 60.00005 * 3 2 1 34 34 H 1.09000 * 109.47074 * 300.00190 * 3 2 1 35 35 H 1.08001 * 119.81577 * 359.97438 * 10 9 7 36 36 H 1.07991 * 119.79313 * 180.25457 * 11 10 9 37 37 H 1.08002 * 119.97411 * 179.75831 * 12 11 10 38 38 H 0.97002 * 120.00037 * 179.97438 * 17 16 14 39 39 H 1.08000 * 120.20540 * 359.95881 * 22 9 7 40 40 H 1.08993 * 109.47136 * 300.00343 * 26 25 23 41 41 H 1.09002 * 109.46884 * 59.99978 * 26 25 23 42 42 H 1.08995 * 109.47548 * 59.99859 * 27 26 25 43 43 H 1.09005 * 109.46703 * 180.02562 * 27 26 25 44 44 H 1.09002 * 109.47236 * 299.99906 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 3.9331 0.8531 -0.8426 6 8 4.0546 0.8637 1.2398 7 6 4.2584 -0.4678 1.2549 8 8 4.0378 -1.1273 0.2589 9 6 4.7502 -1.1261 2.4830 10 6 5.0100 -0.3661 3.6292 11 6 5.4659 -0.9761 4.7839 12 6 5.6796 -2.3366 4.8162 13 6 5.4291 -3.1168 3.6718 14 6 5.6471 -4.5140 3.7023 15 1 5.0519 -5.1670 3.0811 16 6 6.6338 -5.0502 4.5372 17 7 6.6101 -6.3215 4.8451 18 14 7.9847 -3.9507 5.2122 19 1 7.6071 -3.4783 6.5683 20 1 9.2540 -4.7175 5.2907 21 1 8.1671 -2.7823 4.3138 22 6 4.9603 -2.5006 2.4994 23 6 4.0724 2.8578 -0.1244 24 8 4.7675 3.3303 0.7437 25 8 3.7522 3.5917 -1.2018 26 6 4.2762 4.9448 -1.2570 27 6 3.8084 5.6205 -2.5475 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.6768 1.9563 0.8900 34 1 1.6768 1.9563 -0.8900 35 1 4.8504 0.7019 3.6130 36 1 5.6595 -0.3814 5.6643 37 1 6.0394 -2.8050 5.7204 38 1 7.2943 -6.6932 5.4235 39 1 4.7644 -3.0907 1.6163 40 1 3.9132 5.5103 -0.3989 41 1 5.3656 4.9136 -1.2369 42 1 2.7191 5.6517 -2.5671 43 1 4.2022 6.6361 -2.5891 44 1 4.1712 5.0551 -3.4058 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000801828078.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:43 Heat of formation + Delta-G solvation = -181.808381 kcal Electronic energy + Delta-G solvation = -26725.472136 eV Core-core repulsion = 22799.805378 eV Total energy + Delta-G solvation = -3925.666758 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.25311 -41.31896 -39.54323 -38.09257 -37.48974 -35.94154 -35.56297 -32.91051 -32.63930 -31.95176 -31.04633 -27.28120 -26.50660 -25.44827 -23.95588 -22.66405 -22.41155 -22.26942 -21.70234 -19.94450 -18.80937 -18.69192 -18.08582 -17.87882 -17.57128 -17.25928 -16.60708 -16.52096 -15.88177 -15.56707 -15.37373 -15.03472 -14.62583 -14.60788 -14.49829 -14.05992 -13.96702 -13.78688 -13.64552 -13.43221 -13.08367 -12.98563 -12.92818 -12.79023 -12.72936 -12.52149 -12.40538 -12.28014 -11.91317 -11.78234 -11.72127 -11.64296 -11.59052 -11.48530 -11.32379 -11.08271 -9.76742 -9.67167 -8.93529 -6.57314 -0.10663 0.68374 0.78480 0.87074 1.25479 1.40381 1.45179 1.59886 1.94634 2.10070 2.56300 3.29451 3.36201 3.50954 3.64546 3.71692 3.99149 4.04188 4.07942 4.11455 4.20870 4.32985 4.39339 4.49037 4.50136 4.65484 4.72799 4.79216 4.81052 4.83270 4.86607 4.92897 5.01948 5.07296 5.12617 5.20340 5.23084 5.33458 5.34238 5.38966 5.58152 5.66002 5.79132 6.03889 6.25523 6.45764 6.57716 6.63413 6.71820 8.14792 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.018674 B = 0.003024 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.046662 B = 9258.491685 C =10155.605083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.125 4.125 3 C -0.119 4.119 4 C 0.090 3.910 5 H 0.126 0.874 6 O -0.332 6.332 7 C 0.523 3.477 8 O -0.519 6.519 9 C -0.103 4.103 10 C -0.169 4.169 11 C -0.086 4.086 12 C -0.213 4.213 13 C 0.064 3.936 14 C -0.482 4.482 15 H 0.058 0.942 16 C 0.049 3.951 17 N -0.843 5.843 18 Si 0.960 3.040 19 H -0.247 1.247 20 H -0.276 1.276 21 H -0.253 1.253 22 C -0.150 4.150 23 C 0.476 3.524 24 O -0.516 6.516 25 O -0.346 6.346 26 C 0.051 3.949 27 C -0.146 4.146 28 H 0.075 0.925 29 H 0.052 0.948 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.033 0.967 33 H 0.084 0.916 34 H 0.123 0.877 35 H 0.136 0.864 36 H 0.146 0.854 37 H 0.111 0.889 38 H 0.296 0.704 39 H 0.106 0.894 40 H 0.075 0.925 41 H 0.069 0.931 42 H 0.074 0.926 43 H 0.102 0.898 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.945 21.415 -10.165 24.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.162 4.162 3 C -0.156 4.156 4 C 0.034 3.966 5 H 0.144 0.856 6 O -0.249 6.249 7 C 0.370 3.630 8 O -0.409 6.409 9 C -0.105 4.105 10 C -0.188 4.188 11 C -0.104 4.104 12 C -0.233 4.233 13 C 0.061 3.939 14 C -0.511 4.511 15 H 0.076 0.924 16 C -0.166 4.166 17 N -0.469 5.469 18 Si 0.782 3.218 19 H -0.172 1.172 20 H -0.203 1.203 21 H -0.177 1.177 22 C -0.170 4.170 23 C 0.318 3.682 24 O -0.404 6.404 25 O -0.262 6.262 26 C -0.022 4.022 27 C -0.202 4.202 28 H 0.094 0.906 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.052 0.948 33 H 0.102 0.898 34 H 0.141 0.859 35 H 0.154 0.846 36 H 0.163 0.837 37 H 0.129 0.871 38 H 0.107 0.893 39 H 0.124 0.876 40 H 0.093 0.907 41 H 0.087 0.913 42 H 0.093 0.907 43 H 0.120 0.880 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.741 21.160 -10.145 24.416 hybrid contribution 0.749 -0.487 0.275 0.935 sum -5.992 20.673 -9.870 23.679 Atomic orbital electron populations 1.21721 0.93458 1.02174 1.02867 1.21581 0.97763 0.95198 1.01701 1.22059 0.88456 0.99229 1.05897 1.22276 0.97700 0.88668 0.87952 0.85649 1.86643 1.77504 1.23401 1.37338 1.21433 0.73294 0.79874 0.88393 1.90768 1.49304 1.65085 1.35739 1.18904 1.06156 0.93368 0.92023 1.21063 1.05905 0.99526 0.92348 1.21025 0.97377 0.93808 0.98183 1.21473 1.09002 0.95199 0.97594 1.17736 0.91778 0.93170 0.91172 1.19423 1.18186 0.91370 1.22089 0.92376 1.26819 1.00205 0.96618 0.93003 1.69707 1.33179 1.15449 1.28528 0.85574 0.76821 0.79068 0.80337 1.17171 1.20262 1.17666 1.21212 1.05909 0.92285 0.97568 1.23035 0.77333 0.87998 0.79810 1.90705 1.35762 1.72593 1.41384 1.86470 1.69654 1.28523 1.41601 1.23451 0.99346 0.77643 1.01727 1.21841 1.03221 1.00919 0.94245 0.90572 0.92840 0.92246 0.91508 0.94836 0.89785 0.85890 0.84644 0.83675 0.87105 0.89330 0.87599 0.90691 0.91305 0.90743 0.87970 0.91239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 9.91 71.98 0.71 -2.00 16 2 C -0.12 -3.03 4.59 30.59 0.14 -2.89 16 3 C -0.12 -2.47 4.89 30.59 0.15 -2.32 16 4 C 0.09 2.39 2.78 29.84 0.08 2.47 16 5 H 0.13 3.27 7.16 -2.39 -0.02 3.25 16 6 O -0.33 -11.26 8.59 -49.79 -0.43 -11.69 16 7 C 0.52 20.27 6.35 70.34 0.45 20.72 16 8 O -0.52 -20.93 13.52 19.93 0.27 -20.66 16 9 C -0.10 -4.42 5.87 -20.14 -0.12 -4.54 16 10 C -0.17 -6.58 9.62 22.71 0.22 -6.36 16 11 C -0.09 -3.32 10.01 22.17 0.22 -3.10 16 12 C -0.21 -9.62 7.17 22.77 0.16 -9.46 16 13 C 0.06 3.24 5.10 -21.32 -0.11 3.13 16 14 C -0.48 -26.79 9.57 23.47 0.22 -26.57 16 15 H 0.06 3.50 8.06 -2.91 -0.02 3.48 16 16 C 0.05 2.57 5.40 85.25 0.46 3.03 16 17 N -0.84 -45.43 13.93 21.82 0.30 -45.13 16 18 Si 0.96 41.13 24.52 68.60 1.68 42.81 16 19 H -0.25 -9.68 6.71 99.48 0.67 -9.01 16 20 H -0.28 -11.20 7.11 99.48 0.71 -10.49 16 21 H -0.25 -11.14 6.87 99.48 0.68 -10.45 16 22 C -0.15 -7.23 9.34 23.02 0.21 -7.02 16 23 C 0.48 12.33 7.33 71.23 0.52 12.85 16 24 O -0.52 -16.71 16.25 28.33 0.46 -16.25 16 25 O -0.35 -6.89 10.04 -51.43 -0.52 -7.41 16 26 C 0.05 0.77 6.19 71.98 0.45 1.22 16 27 C -0.15 -1.22 10.29 71.98 0.74 -0.48 16 28 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.06 1.04 8.14 -2.38 -0.02 1.03 16 31 H 0.07 1.71 7.79 -2.38 -0.02 1.69 16 32 H 0.03 1.03 6.06 -2.39 -0.01 1.01 16 33 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 34 H 0.12 1.82 8.00 -2.39 -0.02 1.80 16 35 H 0.14 4.67 7.59 -2.91 -0.02 4.65 16 36 H 0.15 4.43 8.06 -2.92 -0.02 4.41 16 37 H 0.11 4.86 4.72 -2.91 -0.01 4.85 16 38 H 0.30 14.24 8.30 -92.71 -0.77 13.47 16 39 H 0.11 5.23 7.64 -2.91 -0.02 5.20 16 40 H 0.07 1.10 8.13 -2.39 -0.02 1.08 16 41 H 0.07 1.09 8.13 -2.39 -0.02 1.07 16 42 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 43 H 0.10 0.46 8.14 -2.38 -0.02 0.44 16 44 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 Total: -1.00 -64.51 368.56 7.23 -57.28 By element: Atomic # 1 Polarization: 21.43 SS G_CDS: 0.94 Total: 22.37 kcal Atomic # 6 Polarization: -25.84 SS G_CDS: 4.52 Total: -21.32 kcal Atomic # 7 Polarization: -45.43 SS G_CDS: 0.30 Total: -45.13 kcal Atomic # 8 Polarization: -55.79 SS G_CDS: -0.21 Total: -56.01 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 1.68 Total: 42.81 kcal Total: -64.51 7.23 -57.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000801828078.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.526 kcal (2) G-P(sol) polarization free energy of solvation -64.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds