Wall clock time and date at job start Tue Mar 31 2020 12:45:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.47026 * 2 1 4 4 C 1.53007 * 109.47026 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.47088 * 304.99875 * 4 3 2 6 6 O 1.45202 * 109.47108 * 64.99779 * 4 3 2 7 7 C 1.34706 * 116.99622 * 270.00087 * 6 4 3 8 8 O 1.21465 * 120.00211 * 0.02562 * 7 6 4 9 9 C 1.47776 * 119.99577 * 180.02562 * 7 6 4 10 10 C 1.39964 * 120.03151 * 359.72422 * 9 7 6 11 11 C 1.38315 * 120.35235 * 179.76398 * 10 9 7 12 12 C 1.37756 * 120.41940 * 0.51548 * 11 10 9 13 13 C 1.40762 * 120.04893 * 359.73890 * 12 11 10 14 14 C 1.41435 * 120.17394 * 180.02562 * 13 12 11 15 15 H 1.08002 * 119.99929 * 24.44571 * 14 13 12 16 16 C 1.39936 * 119.99912 * 204.44025 * 14 13 12 17 17 N 1.30825 * 120.00096 * 17.88550 * 16 14 13 18 18 Si 1.86806 * 119.99912 * 197.88342 * 16 14 13 19 19 H 1.48496 * 109.47229 * 60.00160 * 18 16 14 20 20 H 1.48498 * 109.46816 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47036 * 300.00352 * 18 16 14 22 22 C 1.39053 * 120.02762 * 179.97438 * 9 7 6 23 23 C 1.50694 * 109.47224 * 184.99861 * 4 3 2 24 24 O 1.20828 * 120.00067 * 244.99868 * 23 4 3 25 25 O 1.34233 * 120.00164 * 64.99905 * 23 4 3 26 26 C 1.45202 * 117.00049 * 180.02562 * 25 23 4 27 27 C 1.52995 * 109.47185 * 179.97438 * 26 25 23 28 28 H 1.09002 * 109.46745 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46671 * 300.00325 * 1 2 3 30 30 H 1.09000 * 109.46690 * 60.00538 * 1 2 3 31 31 H 1.09001 * 109.47393 * 239.99557 * 2 1 3 32 32 H 1.09007 * 109.47092 * 119.99958 * 2 1 3 33 33 H 1.08994 * 109.47679 * 60.00385 * 3 2 1 34 34 H 1.09000 * 109.46947 * 299.99304 * 3 2 1 35 35 H 1.08004 * 119.82569 * 359.97438 * 10 9 7 36 36 H 1.08004 * 119.79097 * 180.25804 * 11 10 9 37 37 H 1.07996 * 119.97775 * 179.76795 * 12 11 10 38 38 H 0.97001 * 119.99982 * 179.97438 * 17 16 14 39 39 H 1.07996 * 120.20635 * 359.95503 * 22 9 7 40 40 H 1.08997 * 109.47213 * 299.99993 * 26 25 23 41 41 H 1.09005 * 109.47264 * 59.99758 * 26 25 23 42 42 H 1.08993 * 109.47328 * 179.97438 * 27 26 25 43 43 H 1.08997 * 109.47142 * 300.00162 * 27 26 25 44 44 H 1.09005 * 109.47115 * 59.99792 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 1 3.9331 0.8532 0.8427 6 8 4.0546 0.8637 -1.2398 7 6 4.2584 -0.4678 -1.2547 8 8 4.0370 -1.1273 -0.2590 9 6 4.7514 -1.1260 -2.4825 10 6 5.0012 -0.3675 -3.6319 11 6 5.4674 -0.9760 -4.7832 12 6 5.6811 -2.3365 -4.8155 13 6 5.4305 -3.1168 -3.6711 14 6 5.6495 -4.5138 -3.7012 15 1 6.3500 -4.9354 -4.4068 16 6 4.9587 -5.3495 -2.8166 17 7 3.8797 -4.9173 -2.2161 18 14 5.5772 -7.0823 -2.4931 19 1 6.9501 -7.0208 -1.9304 20 1 4.6750 -7.7573 -1.5259 21 1 5.5978 -7.8462 -3.7664 22 6 4.9625 -2.5003 -2.4984 23 6 4.0724 2.8578 0.1244 24 8 4.6911 3.3609 -0.7833 25 8 3.8325 3.5598 1.2432 26 6 4.3456 4.9172 1.2925 27 6 3.9762 5.5536 2.6339 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8935 -0.5139 -0.8899 32 1 1.8934 -0.5139 0.8900 33 1 1.6768 1.9563 0.8899 34 1 1.6768 1.9562 -0.8900 35 1 4.8324 0.6992 -3.6188 36 1 5.6611 -0.3814 -5.6637 37 1 6.0416 -2.8048 -5.7195 38 1 3.4007 -5.4968 -1.6032 39 1 4.7680 -3.0902 -1.6149 40 1 5.4301 4.8998 1.1846 41 1 3.9091 5.5004 0.4816 42 1 4.3617 6.5724 2.6711 43 1 2.8917 5.5710 2.7413 44 1 4.4123 4.9706 3.4451 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000801828079.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:47 Heat of formation + Delta-G solvation = -170.139500 kcal Electronic energy + Delta-G solvation = -26938.810471 eV Core-core repulsion = 23013.649714 eV Total energy + Delta-G solvation = -3925.160758 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.88434 -39.83816 -37.55954 -36.77114 -35.97350 -34.65561 -33.75651 -32.09367 -30.64606 -29.76655 -29.49432 -25.55472 -25.30267 -23.82349 -22.82789 -21.31138 -21.05280 -20.80806 -19.85247 -18.17683 -17.51324 -17.12313 -16.82265 -16.33417 -15.89248 -15.60231 -14.98091 -14.73141 -14.47351 -14.30827 -13.81911 -13.39448 -13.37863 -13.13281 -13.07992 -12.74702 -12.64063 -12.45637 -12.15560 -11.96855 -11.83129 -11.72576 -11.55696 -11.22044 -11.16468 -11.13336 -10.79583 -10.76029 -10.60675 -10.54732 -10.46623 -10.24467 -10.06835 -9.75452 -9.54896 -9.25629 -7.77985 -7.57922 -6.85379 -4.45895 1.88492 2.05123 2.06584 2.76856 3.04882 3.06320 3.12997 3.34579 3.53229 3.88289 4.37982 4.54117 4.64154 4.68759 4.71891 4.86197 4.99246 5.07018 5.21578 5.37871 5.45938 5.47856 5.51419 5.57059 5.66469 5.71239 5.80556 5.86295 6.11407 6.19514 6.21262 6.30904 6.41467 6.49274 6.57152 6.81741 6.90983 6.94288 7.14347 7.28125 7.60766 7.66064 7.73028 7.88052 8.07348 8.40657 8.43228 8.74155 8.76351 10.09963 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.016493 B = 0.003200 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.266876 B = 8746.857423 C = 9462.395892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.125 4.125 3 C -0.126 4.126 4 C 0.098 3.902 5 H 0.121 0.879 6 O -0.329 6.329 7 C 0.515 3.485 8 O -0.509 6.509 9 C -0.115 4.115 10 C -0.191 4.191 11 C -0.104 4.104 12 C -0.200 4.200 13 C 0.095 3.905 14 C -0.460 4.460 15 H 0.082 0.918 16 C 0.074 3.926 17 N -0.787 5.787 18 Si 0.911 3.089 19 H -0.263 1.263 20 H -0.277 1.277 21 H -0.265 1.265 22 C -0.087 4.087 23 C 0.467 3.533 24 O -0.482 6.482 25 O -0.354 6.354 26 C 0.061 3.939 27 C -0.152 4.152 28 H 0.057 0.943 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.077 0.923 35 H 0.105 0.895 36 H 0.097 0.903 37 H 0.099 0.901 38 H 0.285 0.715 39 H 0.137 0.863 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.080 0.920 43 H 0.067 0.933 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.898 13.285 8.212 16.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.162 4.162 3 C -0.164 4.164 4 C 0.041 3.959 5 H 0.138 0.862 6 O -0.247 6.247 7 C 0.363 3.637 8 O -0.398 6.398 9 C -0.116 4.116 10 C -0.211 4.211 11 C -0.122 4.122 12 C -0.219 4.219 13 C 0.092 3.908 14 C -0.489 4.489 15 H 0.100 0.900 16 C -0.145 4.145 17 N -0.411 5.411 18 Si 0.735 3.265 19 H -0.187 1.187 20 H -0.202 1.202 21 H -0.189 1.189 22 C -0.107 4.107 23 C 0.307 3.693 24 O -0.367 6.367 25 O -0.272 6.272 26 C -0.012 4.012 27 C -0.209 4.209 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.107 0.893 34 H 0.096 0.904 35 H 0.123 0.877 36 H 0.115 0.885 37 H 0.117 0.883 38 H 0.096 0.904 39 H 0.154 0.846 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.099 0.901 43 H 0.086 0.914 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.978 13.217 8.423 16.170 hybrid contribution 0.261 -0.589 0.168 0.666 sum -3.717 12.628 8.592 15.720 Atomic orbital electron populations 1.21739 0.95537 1.01954 1.01299 1.21617 0.95905 0.94718 1.03984 1.22018 0.90629 0.99835 1.03922 1.21876 0.95911 0.88383 0.89738 0.86189 1.86734 1.77774 1.25167 1.35032 1.21972 0.73497 0.78874 0.89397 1.90770 1.49019 1.64387 1.35594 1.18773 1.08319 0.94133 0.90391 1.20623 1.08794 0.98165 0.93498 1.20520 1.00353 0.94771 0.96534 1.21206 1.09531 0.93549 0.97651 1.17529 0.89939 0.93482 0.89813 1.19531 1.21644 0.91037 1.16687 0.89973 1.25952 0.93336 1.01229 0.93992 1.69764 1.11780 1.38224 1.21339 0.86315 0.79938 0.81091 0.79145 1.18713 1.20221 1.18931 1.21646 0.99310 0.90279 0.99428 1.23228 0.77390 0.88408 0.80234 1.90706 1.36331 1.70291 1.39404 1.86470 1.72755 1.28025 1.39976 1.23075 0.99544 0.79062 0.99561 1.21808 1.03078 1.00461 0.95541 0.92340 0.92969 0.92869 0.91235 0.90719 0.89253 0.90383 0.87683 0.88465 0.88298 0.90371 0.84566 0.91030 0.91028 0.90146 0.91380 0.91364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.91 37.16 0.37 -1.42 16 2 C -0.12 -1.84 4.58 -26.73 -0.12 -1.96 16 3 C -0.13 -1.67 4.91 -26.73 -0.13 -1.80 16 4 C 0.10 1.53 2.78 -27.88 -0.08 1.46 16 5 H 0.12 1.84 7.16 -51.93 -0.37 1.47 16 6 O -0.33 -6.43 8.60 -47.19 -0.41 -6.83 16 7 C 0.52 11.28 6.35 34.63 0.22 11.50 16 8 O -0.51 -11.48 13.51 -19.24 -0.26 -11.74 16 9 C -0.11 -2.75 5.87 -105.05 -0.62 -3.37 16 10 C -0.19 -4.30 9.62 -38.91 -0.37 -4.67 16 11 C -0.10 -2.26 10.01 -39.73 -0.40 -2.66 16 12 C -0.20 -4.70 9.78 -38.80 -0.38 -5.08 16 13 C 0.09 2.46 5.57 -106.87 -0.60 1.87 16 14 C -0.46 -11.81 9.05 -37.73 -0.34 -12.16 16 15 H 0.08 2.00 7.91 -52.49 -0.42 1.58 16 16 C 0.07 1.82 5.14 -17.34 -0.09 1.73 16 17 N -0.79 -20.15 10.96 55.55 0.61 -19.54 16 18 Si 0.91 18.36 29.60 -169.99 -5.03 13.33 16 19 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 20 H -0.28 -5.48 7.11 56.52 0.40 -5.07 16 21 H -0.26 -5.23 7.11 56.52 0.40 -4.82 16 22 C -0.09 -2.27 8.24 -38.43 -0.32 -2.59 16 23 C 0.47 7.05 7.29 36.00 0.26 7.31 16 24 O -0.48 -8.68 16.26 -25.40 -0.41 -9.09 16 25 O -0.35 -4.34 10.19 -39.27 -0.40 -4.74 16 26 C 0.06 0.58 6.19 37.16 0.23 0.81 16 27 C -0.15 -0.97 10.29 37.16 0.38 -0.59 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 1.26 6.06 -51.93 -0.31 0.94 16 32 H 0.07 1.14 7.79 -51.92 -0.40 0.73 16 33 H 0.09 0.95 8.11 -51.93 -0.42 0.53 16 34 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 35 H 0.11 2.21 7.59 -52.48 -0.40 1.81 16 36 H 0.10 1.82 8.06 -52.48 -0.42 1.39 16 37 H 0.10 2.14 8.06 -52.49 -0.42 1.72 16 38 H 0.29 6.72 8.30 -40.82 -0.34 6.38 16 39 H 0.14 3.75 5.74 -52.49 -0.30 3.45 16 40 H 0.07 0.69 8.13 -51.93 -0.42 0.26 16 41 H 0.07 0.66 8.13 -51.93 -0.42 0.24 16 42 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 43 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 44 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 LS Contribution 374.05 15.07 5.64 5.64 Total: -1.00 -29.08 374.05 -8.65 -37.73 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -6.41 Total: 6.87 kcal Atomic # 6 Polarization: -9.65 SS G_CDS: -1.98 Total: -11.62 kcal Atomic # 7 Polarization: -20.15 SS G_CDS: 0.61 Total: -19.54 kcal Atomic # 8 Polarization: -30.93 SS G_CDS: -1.48 Total: -32.41 kcal Atomic # 14 Polarization: 18.36 SS G_CDS: -5.03 Total: 13.33 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -29.08 -8.65 -37.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000801828079.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.405 kcal (2) G-P(sol) polarization free energy of solvation -29.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds