Wall clock time and date at job start Tue Mar 31 2020 12:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.47026 * 2 1 4 4 C 1.53007 * 109.47026 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.47088 * 304.99875 * 4 3 2 6 6 O 1.45202 * 109.47108 * 64.99779 * 4 3 2 7 7 C 1.34706 * 116.99622 * 270.00087 * 6 4 3 8 8 O 1.21465 * 120.00211 * 0.02562 * 7 6 4 9 9 C 1.47776 * 119.99577 * 180.02562 * 7 6 4 10 10 C 1.39964 * 120.03151 * 359.72422 * 9 7 6 11 11 C 1.38315 * 120.35235 * 179.76398 * 10 9 7 12 12 C 1.37756 * 120.41940 * 0.51548 * 11 10 9 13 13 C 1.40762 * 120.04893 * 359.73890 * 12 11 10 14 14 C 1.41435 * 120.17394 * 180.02562 * 13 12 11 15 15 H 1.08002 * 119.99929 * 24.44571 * 14 13 12 16 16 C 1.39936 * 119.99912 * 204.44025 * 14 13 12 17 17 N 1.30825 * 120.00096 * 17.88550 * 16 14 13 18 18 Si 1.86806 * 119.99912 * 197.88342 * 16 14 13 19 19 H 1.48496 * 109.47229 * 60.00160 * 18 16 14 20 20 H 1.48498 * 109.46816 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47036 * 300.00352 * 18 16 14 22 22 C 1.39053 * 120.02762 * 179.97438 * 9 7 6 23 23 C 1.50694 * 109.47224 * 184.99861 * 4 3 2 24 24 O 1.20828 * 120.00067 * 244.99868 * 23 4 3 25 25 O 1.34233 * 120.00164 * 64.99905 * 23 4 3 26 26 C 1.45202 * 117.00049 * 180.02562 * 25 23 4 27 27 C 1.52995 * 109.47185 * 179.97438 * 26 25 23 28 28 H 1.09002 * 109.46745 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46671 * 300.00325 * 1 2 3 30 30 H 1.09000 * 109.46690 * 60.00538 * 1 2 3 31 31 H 1.09001 * 109.47393 * 239.99557 * 2 1 3 32 32 H 1.09007 * 109.47092 * 119.99958 * 2 1 3 33 33 H 1.08994 * 109.47679 * 60.00385 * 3 2 1 34 34 H 1.09000 * 109.46947 * 299.99304 * 3 2 1 35 35 H 1.08004 * 119.82569 * 359.97438 * 10 9 7 36 36 H 1.08004 * 119.79097 * 180.25804 * 11 10 9 37 37 H 1.07996 * 119.97775 * 179.76795 * 12 11 10 38 38 H 0.97001 * 119.99982 * 179.97438 * 17 16 14 39 39 H 1.07996 * 120.20635 * 359.95503 * 22 9 7 40 40 H 1.08997 * 109.47213 * 299.99993 * 26 25 23 41 41 H 1.09005 * 109.47264 * 59.99758 * 26 25 23 42 42 H 1.08993 * 109.47328 * 179.97438 * 27 26 25 43 43 H 1.08997 * 109.47142 * 300.00162 * 27 26 25 44 44 H 1.09005 * 109.47115 * 59.99792 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 1 3.9331 0.8532 0.8427 6 8 4.0546 0.8637 -1.2398 7 6 4.2584 -0.4678 -1.2547 8 8 4.0370 -1.1273 -0.2590 9 6 4.7514 -1.1260 -2.4825 10 6 5.0012 -0.3675 -3.6319 11 6 5.4674 -0.9760 -4.7832 12 6 5.6811 -2.3365 -4.8155 13 6 5.4305 -3.1168 -3.6711 14 6 5.6495 -4.5138 -3.7012 15 1 6.3500 -4.9354 -4.4068 16 6 4.9587 -5.3495 -2.8166 17 7 3.8797 -4.9173 -2.2161 18 14 5.5772 -7.0823 -2.4931 19 1 6.9501 -7.0208 -1.9304 20 1 4.6750 -7.7573 -1.5259 21 1 5.5978 -7.8462 -3.7664 22 6 4.9625 -2.5003 -2.4984 23 6 4.0724 2.8578 0.1244 24 8 4.6911 3.3609 -0.7833 25 8 3.8325 3.5598 1.2432 26 6 4.3456 4.9172 1.2925 27 6 3.9762 5.5536 2.6339 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8935 -0.5139 -0.8899 32 1 1.8934 -0.5139 0.8900 33 1 1.6768 1.9563 0.8899 34 1 1.6768 1.9562 -0.8900 35 1 4.8324 0.6992 -3.6188 36 1 5.6611 -0.3814 -5.6637 37 1 6.0416 -2.8048 -5.7195 38 1 3.4007 -5.4968 -1.6032 39 1 4.7680 -3.0902 -1.6149 40 1 5.4301 4.8998 1.1846 41 1 3.9091 5.5004 0.4816 42 1 4.3617 6.5724 2.6711 43 1 2.8917 5.5710 2.7413 44 1 4.4123 4.9706 3.4451 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000801828079.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:46 Heat of formation + Delta-G solvation = -182.697160 kcal Electronic energy + Delta-G solvation = -26939.355012 eV Core-core repulsion = 23013.649714 eV Total energy + Delta-G solvation = -3925.705299 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.22367 -41.28113 -39.31199 -38.05528 -37.44830 -35.94958 -35.57550 -32.88306 -32.30312 -31.40934 -31.00290 -27.32424 -26.53399 -25.25504 -23.86803 -22.88693 -22.42005 -22.11526 -21.48256 -19.82607 -18.86298 -18.58762 -18.01821 -17.79759 -17.37149 -17.12198 -16.59743 -16.38454 -15.85660 -15.37345 -15.22995 -15.06489 -14.64215 -14.50082 -14.37252 -13.98544 -13.88727 -13.65073 -13.52763 -13.08666 -13.01700 -12.97344 -12.83689 -12.82723 -12.58201 -12.53191 -12.30965 -12.24660 -12.08996 -11.78421 -11.70896 -11.60079 -11.57859 -11.38834 -11.27129 -11.08496 -9.64620 -9.46893 -8.69238 -6.40259 0.08080 0.80850 0.85367 0.95394 1.38410 1.46584 1.51503 1.74340 1.99217 2.19311 2.70732 3.30261 3.50228 3.61313 3.65840 3.78094 3.98342 4.03594 4.08157 4.10309 4.32018 4.38861 4.47881 4.59784 4.60654 4.70044 4.76495 4.82003 4.83842 4.92087 5.02830 5.05920 5.08969 5.11039 5.19473 5.21370 5.26799 5.32391 5.36623 5.42248 5.78366 5.87331 5.99092 6.20323 6.45571 6.51070 6.71856 6.84834 6.86591 8.28063 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.016493 B = 0.003200 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.266876 B = 8746.857423 C = 9462.395892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.124 4.124 3 C -0.117 4.117 4 C 0.088 3.912 5 H 0.122 0.878 6 O -0.334 6.334 7 C 0.521 3.479 8 O -0.523 6.523 9 C -0.127 4.127 10 C -0.187 4.187 11 C -0.098 4.098 12 C -0.204 4.204 13 C 0.067 3.933 14 C -0.492 4.492 15 H 0.088 0.912 16 C 0.032 3.968 17 N -0.822 5.822 18 Si 0.983 3.017 19 H -0.261 1.261 20 H -0.271 1.271 21 H -0.254 1.254 22 C -0.117 4.117 23 C 0.478 3.522 24 O -0.515 6.515 25 O -0.346 6.346 26 C 0.050 3.950 27 C -0.145 4.145 28 H 0.051 0.949 29 H 0.078 0.922 30 H 0.059 0.941 31 H 0.027 0.973 32 H 0.064 0.936 33 H 0.124 0.876 34 H 0.082 0.918 35 H 0.122 0.878 36 H 0.138 0.862 37 H 0.116 0.884 38 H 0.289 0.711 39 H 0.111 0.889 40 H 0.069 0.931 41 H 0.075 0.925 42 H 0.103 0.897 43 H 0.074 0.926 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.292 14.808 8.647 17.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.161 4.161 3 C -0.155 4.155 4 C 0.032 3.968 5 H 0.140 0.860 6 O -0.252 6.252 7 C 0.369 3.631 8 O -0.413 6.413 9 C -0.128 4.128 10 C -0.206 4.206 11 C -0.116 4.116 12 C -0.224 4.224 13 C 0.064 3.936 14 C -0.521 4.521 15 H 0.106 0.894 16 C -0.183 4.183 17 N -0.447 5.447 18 Si 0.803 3.197 19 H -0.185 1.185 20 H -0.195 1.195 21 H -0.177 1.177 22 C -0.137 4.137 23 C 0.320 3.680 24 O -0.403 6.403 25 O -0.263 6.263 26 C -0.022 4.022 27 C -0.202 4.202 28 H 0.070 0.930 29 H 0.097 0.903 30 H 0.078 0.922 31 H 0.046 0.954 32 H 0.083 0.917 33 H 0.143 0.857 34 H 0.101 0.899 35 H 0.140 0.860 36 H 0.155 0.845 37 H 0.134 0.866 38 H 0.100 0.900 39 H 0.129 0.871 40 H 0.087 0.913 41 H 0.094 0.906 42 H 0.122 0.878 43 H 0.093 0.907 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.382 14.775 8.866 17.779 hybrid contribution 0.365 -0.850 0.062 0.927 sum -4.017 13.925 8.929 17.022 Atomic orbital electron populations 1.21710 0.93273 1.02100 1.02942 1.21554 0.97899 0.95214 1.01455 1.22038 0.88537 0.99070 1.05812 1.22252 0.97680 0.88809 0.88055 0.86045 1.86656 1.77661 1.23602 1.37237 1.21598 0.73232 0.79665 0.88628 1.90747 1.49556 1.65041 1.35975 1.19027 1.07961 0.93887 0.91967 1.20910 1.07689 0.98891 0.93139 1.20924 0.98693 0.94429 0.97584 1.21494 1.08971 0.94385 0.97507 1.17902 0.90668 0.94353 0.90650 1.19831 1.22651 0.91529 1.18112 0.89428 1.26838 0.92976 1.05340 0.93196 1.69851 1.12948 1.39875 1.22017 0.85231 0.79169 0.75885 0.79378 1.18517 1.19546 1.17749 1.21458 1.02039 0.91160 0.99000 1.22986 0.76553 0.88030 0.80450 1.90694 1.37942 1.70974 1.40720 1.86473 1.72314 1.29353 1.38156 1.23469 0.99529 0.77531 1.01713 1.21842 1.03635 1.01294 0.93410 0.93030 0.90260 0.92220 0.95365 0.91733 0.85742 0.89892 0.85969 0.84465 0.86585 0.90020 0.87074 0.91305 0.90616 0.87834 0.90736 0.91287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.28 9.91 71.98 0.71 -2.56 16 2 C -0.12 -3.64 4.58 30.60 0.14 -3.50 16 3 C -0.12 -2.93 4.91 30.60 0.15 -2.78 16 4 C 0.09 2.73 2.78 29.85 0.08 2.81 16 5 H 0.12 3.73 7.16 -2.39 -0.02 3.71 16 6 O -0.33 -13.16 8.60 -49.78 -0.43 -13.59 16 7 C 0.52 23.59 6.35 70.34 0.45 24.04 16 8 O -0.52 -24.71 13.51 19.95 0.27 -24.44 16 9 C -0.13 -6.28 5.87 -20.14 -0.12 -6.39 16 10 C -0.19 -8.32 9.62 22.71 0.22 -8.10 16 11 C -0.10 -4.16 10.01 22.17 0.22 -3.94 16 12 C -0.20 -9.57 9.78 22.77 0.22 -9.35 16 13 C 0.07 3.56 5.57 -21.32 -0.12 3.45 16 14 C -0.49 -26.02 9.05 23.47 0.21 -25.81 16 15 H 0.09 4.35 7.91 -2.91 -0.02 4.32 16 16 C 0.03 1.62 5.14 85.25 0.44 2.06 16 17 N -0.82 -43.90 10.96 21.82 0.24 -43.67 16 18 Si 0.98 38.19 29.60 68.60 2.03 40.22 16 19 H -0.26 -9.96 7.11 99.48 0.71 -9.26 16 20 H -0.27 -10.12 7.11 99.48 0.71 -9.41 16 21 H -0.25 -9.32 7.11 99.48 0.71 -8.62 16 22 C -0.12 -6.37 8.24 23.02 0.19 -6.18 16 23 C 0.48 13.93 7.29 71.23 0.52 14.45 16 24 O -0.52 -18.22 16.26 28.31 0.46 -17.75 16 25 O -0.35 -7.83 10.19 -51.45 -0.52 -8.36 16 26 C 0.05 0.86 6.19 71.98 0.45 1.31 16 27 C -0.15 -1.45 10.29 71.98 0.74 -0.71 16 28 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.03 1.05 6.06 -2.39 -0.01 1.04 16 32 H 0.06 1.99 7.79 -2.38 -0.02 1.98 16 33 H 0.12 2.27 8.11 -2.39 -0.02 2.25 16 34 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.12 4.99 7.59 -2.91 -0.02 4.96 16 36 H 0.14 4.67 8.06 -2.91 -0.02 4.64 16 37 H 0.12 4.93 8.06 -2.91 -0.02 4.91 16 38 H 0.29 14.18 8.30 -92.71 -0.77 13.41 16 39 H 0.11 6.54 5.74 -2.91 -0.02 6.53 16 40 H 0.07 1.23 8.13 -2.39 -0.02 1.21 16 41 H 0.08 1.25 8.13 -2.38 -0.02 1.23 16 42 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 43 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 44 H 0.07 0.70 8.14 -2.38 -0.02 0.69 16 Total: -1.00 -65.69 374.05 7.55 -58.14 By element: Atomic # 1 Polarization: 29.69 SS G_CDS: 1.00 Total: 30.68 kcal Atomic # 6 Polarization: -25.74 SS G_CDS: 4.51 Total: -21.23 kcal Atomic # 7 Polarization: -43.90 SS G_CDS: 0.24 Total: -43.67 kcal Atomic # 8 Polarization: -63.92 SS G_CDS: -0.22 Total: -64.14 kcal Atomic # 14 Polarization: 38.19 SS G_CDS: 2.03 Total: 40.22 kcal Total: -65.69 7.55 -58.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000801828079.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.561 kcal (2) G-P(sol) polarization free energy of solvation -65.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds