Wall clock time and date at job start Tue Mar 31 2020 12:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47452 * 2 1 4 4 C 1.52993 * 109.47623 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47101 * 55.00248 * 4 3 2 6 6 O 1.45203 * 109.47166 * 295.00694 * 4 3 2 7 7 C 1.34771 * 117.00457 * 89.99680 * 6 4 3 8 8 O 1.21515 * 120.00026 * 359.97438 * 7 6 4 9 9 C 1.47501 * 120.00094 * 179.97438 * 7 6 4 10 10 C 1.40073 * 119.90212 * 180.02562 * 9 7 6 11 11 C 1.36300 * 120.10206 * 180.25905 * 10 9 7 12 12 C 1.40893 * 119.89711 * 359.51403 * 11 10 9 13 13 C 1.41091 * 120.10255 * 180.23496 * 12 11 10 14 14 H 1.08001 * 120.00415 * 204.81651 * 13 12 11 15 15 C 1.40248 * 119.99756 * 24.80634 * 13 12 11 16 16 N 1.30632 * 119.99956 * 17.73115 * 15 13 12 17 17 Si 1.86797 * 120.00167 * 197.73172 * 15 13 12 18 18 H 1.48501 * 109.47351 * 90.00385 * 17 15 13 19 19 H 1.48499 * 109.47050 * 210.00026 * 17 15 13 20 20 H 1.48500 * 109.47161 * 329.99778 * 17 15 13 21 21 C 1.40906 * 119.80286 * 0.50317 * 12 11 10 22 22 C 1.36297 * 119.89800 * 359.73440 * 21 12 11 23 23 C 1.50697 * 109.47595 * 175.00237 * 4 3 2 24 24 O 1.20817 * 120.00530 * 119.99850 * 23 4 3 25 25 O 1.34236 * 119.99705 * 300.00380 * 23 4 3 26 26 C 1.45197 * 116.99733 * 179.97438 * 25 23 4 27 27 C 1.53009 * 109.46789 * 180.02562 * 26 25 23 28 28 H 1.08999 * 109.47627 * 299.99911 * 1 2 3 29 29 H 1.09003 * 109.47046 * 60.00253 * 1 2 3 30 30 H 1.09007 * 109.47317 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47627 * 240.00089 * 2 1 3 32 32 H 1.08998 * 109.47130 * 120.00216 * 2 1 3 33 33 H 1.09008 * 109.46703 * 59.99664 * 3 2 1 34 34 H 1.08998 * 109.47129 * 300.00216 * 3 2 1 35 35 H 1.08002 * 119.94534 * 359.97438 * 10 9 7 36 36 H 1.08004 * 120.05042 * 179.74750 * 11 10 9 37 37 H 0.97000 * 120.00424 * 179.97438 * 16 15 13 38 38 H 1.07999 * 120.05172 * 179.70589 * 21 12 11 39 39 H 1.07997 * 119.94971 * 180.02562 * 22 21 12 40 40 H 1.08996 * 109.47111 * 299.99799 * 26 25 23 41 41 H 1.09004 * 109.46916 * 60.00574 * 26 25 23 42 42 H 1.08998 * 109.46574 * 299.99941 * 27 26 25 43 43 H 1.08994 * 109.47390 * 60.00130 * 27 26 25 44 44 H 1.08996 * 109.46834 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9337 0.8530 -0.8410 6 8 4.0535 0.8640 1.2416 7 6 4.2574 -0.4681 1.2572 8 8 4.0368 -1.1282 0.2611 9 6 4.7485 -1.1247 2.4833 10 6 4.9602 -2.5093 2.4970 11 6 5.4089 -3.1210 3.6293 12 6 5.6694 -2.3571 4.7841 13 6 6.1387 -2.9852 5.9571 14 1 5.9660 -2.5284 6.9204 15 6 6.8293 -4.2029 5.8722 16 7 7.3413 -4.5854 4.7329 17 14 7.0169 -5.2779 7.3883 18 1 5.8711 -6.2188 7.4729 19 1 8.2835 -6.0476 7.2956 20 1 7.0454 -4.4221 8.6015 21 6 5.4546 -0.9646 4.7659 22 6 5.0012 -0.3620 3.6306 23 6 4.0724 2.8579 -0.1231 24 8 4.7666 3.3307 0.7453 25 8 3.7485 3.5934 -1.1983 26 6 4.2673 4.9485 -1.2504 27 6 3.7957 5.6259 -2.5389 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.6766 1.9563 0.8900 34 1 1.6767 1.9563 -0.8899 35 1 4.7633 -3.0936 1.6103 36 1 5.5680 -4.1892 3.6402 37 1 7.8192 -5.4274 4.6742 38 1 5.6485 -0.3758 5.6502 39 1 4.8366 0.7053 3.6155 40 1 3.9027 5.5105 -0.3906 41 1 5.3568 4.9214 -1.2316 42 1 4.1599 5.0640 -3.3989 43 1 2.7063 5.6530 -2.5574 44 1 4.1855 6.6430 -2.5782 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000801855127.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:50 Heat of formation + Delta-G solvation = -175.173843 kcal Electronic energy + Delta-G solvation = -26562.293131 eV Core-core repulsion = 22636.914068 eV Total energy + Delta-G solvation = -3925.379063 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.80552 -39.68396 -37.59816 -36.73026 -35.88304 -34.59468 -33.96656 -32.07237 -30.51758 -29.92240 -29.46457 -26.23477 -25.32665 -23.45656 -22.41146 -21.33124 -21.18067 -20.68118 -19.86275 -17.91176 -17.60814 -17.10367 -16.88668 -16.65315 -15.76708 -15.67729 -15.32388 -14.63241 -14.25832 -14.06765 -13.81617 -13.39537 -13.36077 -13.07407 -13.05757 -12.69508 -12.62764 -12.23881 -12.14265 -12.03821 -11.89677 -11.76818 -11.62587 -11.39446 -11.29860 -11.15949 -11.00693 -10.75040 -10.73314 -10.56243 -10.41641 -10.13421 -10.02086 -9.60781 -9.50691 -9.41298 -7.76822 -7.66239 -7.11445 -4.69809 1.98715 2.08396 2.15707 2.85488 2.92056 2.95046 3.02474 3.48996 3.59385 3.69191 4.41125 4.43473 4.66330 4.71134 4.75314 4.90195 5.01302 5.09371 5.22935 5.40454 5.49291 5.49540 5.50551 5.56417 5.67744 5.81140 5.83516 5.90316 6.13542 6.20071 6.24682 6.24801 6.29871 6.47487 6.72652 6.79487 6.89320 7.03168 7.05644 7.39870 7.59580 7.65648 7.77169 7.84461 7.99344 8.34037 8.54607 8.63259 8.68347 9.79768 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.020594 B = 0.002688 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.268886 B =10415.954190 C =11183.858276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C -0.126 4.126 4 C 0.100 3.900 5 H 0.119 0.881 6 O -0.335 6.335 7 C 0.516 3.484 8 O -0.542 6.542 9 C -0.274 4.274 10 C -0.030 4.030 11 C -0.185 4.185 12 C 0.132 3.868 13 C -0.433 4.433 14 H 0.088 0.912 15 C 0.072 3.928 16 N -0.762 5.762 17 Si 0.917 3.083 18 H -0.263 1.263 19 H -0.274 1.274 20 H -0.258 1.258 21 C -0.239 4.239 22 C -0.026 4.026 23 C 0.465 3.535 24 O -0.483 6.483 25 O -0.355 6.355 26 C 0.061 3.939 27 C -0.152 4.152 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.056 0.944 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.088 0.912 35 H 0.102 0.898 36 H 0.123 0.877 37 H 0.289 0.711 38 H 0.100 0.900 39 H 0.104 0.896 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.067 0.933 43 H 0.067 0.933 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.603 10.833 -9.257 16.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C -0.164 4.164 4 C 0.043 3.957 5 H 0.137 0.863 6 O -0.253 6.253 7 C 0.369 3.631 8 O -0.436 6.436 9 C -0.277 4.277 10 C -0.049 4.049 11 C -0.204 4.204 12 C 0.128 3.872 13 C -0.459 4.459 14 H 0.106 0.894 15 C -0.151 4.151 16 N -0.385 5.385 17 Si 0.740 3.260 18 H -0.188 1.188 19 H -0.199 1.199 20 H -0.182 1.182 21 C -0.259 4.259 22 C -0.044 4.044 23 C 0.306 3.694 24 O -0.368 6.368 25 O -0.273 6.273 26 C -0.013 4.013 27 C -0.209 4.209 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.106 0.894 35 H 0.120 0.880 36 H 0.141 0.859 37 H 0.101 0.899 38 H 0.118 0.882 39 H 0.122 0.878 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.086 0.914 43 H 0.086 0.914 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -7.288 10.667 -9.408 15.982 hybrid contribution 0.391 -0.319 0.523 0.727 sum -6.897 10.349 -8.885 15.284 Atomic orbital electron populations 1.21751 0.95715 1.01763 1.01371 1.21601 0.95618 0.94977 1.03889 1.22003 0.90973 0.99602 1.03800 1.21798 0.95673 0.88141 0.90100 0.86309 1.86724 1.78262 1.25674 1.34639 1.21655 0.73733 0.78488 0.89206 1.90709 1.52324 1.64412 1.36121 1.18150 1.23914 0.93857 0.91768 1.20438 0.95150 0.91935 0.97412 1.20977 1.06036 1.00048 0.93357 1.17861 0.85757 0.90835 0.92702 1.19953 1.28038 1.03061 0.94887 0.89403 1.26179 0.93137 0.97767 0.97993 1.69738 1.21642 1.20372 1.26710 0.86152 0.78780 0.79799 0.81265 1.18785 1.19899 1.18169 1.20728 1.12605 0.94592 0.97945 1.20593 0.93778 0.97776 0.92287 1.23304 0.78137 0.88312 0.79627 1.90705 1.34199 1.71931 1.39931 1.86467 1.70199 1.27083 1.43556 1.23067 0.99341 0.79095 0.99767 1.21806 1.02704 1.00169 0.96175 0.92868 0.92960 0.92526 0.90830 0.91239 0.90537 0.89358 0.87956 0.85898 0.89925 0.88172 0.87812 0.91053 0.91064 0.91395 0.91403 0.90172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.91 37.15 0.37 -1.30 16 2 C -0.12 -1.72 4.59 -26.73 -0.12 -1.84 16 3 C -0.13 -1.64 4.89 -26.73 -0.13 -1.77 16 4 C 0.10 1.57 2.78 -27.89 -0.08 1.50 16 5 H 0.12 1.84 7.16 -51.93 -0.37 1.47 16 6 O -0.33 -6.58 8.58 -47.38 -0.41 -6.98 16 7 C 0.52 11.13 6.34 34.51 0.22 11.35 16 8 O -0.54 -11.83 13.51 -19.28 -0.26 -12.09 16 9 C -0.27 -6.43 5.89 -104.75 -0.62 -7.04 16 10 C -0.03 -0.73 9.52 -39.59 -0.38 -1.11 16 11 C -0.19 -4.64 8.63 -39.28 -0.34 -4.98 16 12 C 0.13 3.34 5.57 -106.80 -0.60 2.74 16 13 C -0.43 -10.57 9.04 -37.75 -0.34 -10.91 16 14 H 0.09 2.03 7.91 -52.49 -0.42 1.61 16 15 C 0.07 1.65 5.14 -17.31 -0.09 1.57 16 16 N -0.76 -18.20 10.95 55.56 0.61 -17.59 16 17 Si 0.92 16.99 29.60 -169.99 -5.03 11.96 16 18 H -0.26 -4.83 7.11 56.52 0.40 -4.43 16 19 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 20 H -0.26 -4.73 7.11 56.52 0.40 -4.32 16 21 C -0.24 -5.68 9.73 -39.27 -0.38 -6.07 16 22 C -0.03 -0.59 9.55 -39.59 -0.38 -0.97 16 23 C 0.47 7.15 7.33 36.00 0.26 7.41 16 24 O -0.48 -8.90 16.25 -25.40 -0.41 -9.32 16 25 O -0.36 -4.40 10.03 -39.27 -0.39 -4.79 16 26 C 0.06 0.59 6.19 37.16 0.23 0.82 16 27 C -0.15 -0.99 10.29 37.16 0.38 -0.60 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 1.06 7.79 -51.93 -0.40 0.66 16 32 H 0.07 1.18 6.05 -51.93 -0.31 0.87 16 33 H 0.08 0.98 8.14 -51.92 -0.42 0.56 16 34 H 0.09 0.93 8.00 -51.93 -0.42 0.52 16 35 H 0.10 2.35 7.63 -52.49 -0.40 1.95 16 36 H 0.12 3.12 6.16 -52.48 -0.32 2.79 16 37 H 0.29 6.19 8.29 -40.82 -0.34 5.85 16 38 H 0.10 2.20 8.06 -52.49 -0.42 1.77 16 39 H 0.10 2.21 7.59 -52.49 -0.40 1.82 16 40 H 0.07 0.68 8.13 -51.93 -0.42 0.25 16 41 H 0.07 0.70 8.13 -51.93 -0.42 0.28 16 42 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 44 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 373.54 15.07 5.63 5.63 Total: -1.00 -28.30 373.54 -8.66 -36.95 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -6.40 Total: 7.44 kcal Atomic # 6 Polarization: -9.22 SS G_CDS: -1.99 Total: -11.20 kcal Atomic # 7 Polarization: -18.20 SS G_CDS: 0.61 Total: -17.59 kcal Atomic # 8 Polarization: -31.71 SS G_CDS: -1.47 Total: -33.19 kcal Atomic # 14 Polarization: 16.99 SS G_CDS: -5.03 Total: 11.96 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -28.30 -8.66 -36.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000801855127.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.221 kcal (2) G-P(sol) polarization free energy of solvation -28.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds