Wall clock time and date at job start Tue Mar 31 2020 12:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47452 * 2 1 4 4 C 1.52993 * 109.47623 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47101 * 55.00248 * 4 3 2 6 6 O 1.45203 * 109.47166 * 295.00694 * 4 3 2 7 7 C 1.34771 * 117.00457 * 89.99680 * 6 4 3 8 8 O 1.21515 * 120.00026 * 359.97438 * 7 6 4 9 9 C 1.47501 * 120.00094 * 179.97438 * 7 6 4 10 10 C 1.40073 * 119.90212 * 180.02562 * 9 7 6 11 11 C 1.36300 * 120.10206 * 180.25905 * 10 9 7 12 12 C 1.40893 * 119.89711 * 359.51403 * 11 10 9 13 13 C 1.41091 * 120.10255 * 180.23496 * 12 11 10 14 14 H 1.08001 * 120.00415 * 204.81651 * 13 12 11 15 15 C 1.40248 * 119.99756 * 24.80634 * 13 12 11 16 16 N 1.30632 * 119.99956 * 17.73115 * 15 13 12 17 17 Si 1.86797 * 120.00167 * 197.73172 * 15 13 12 18 18 H 1.48501 * 109.47351 * 90.00385 * 17 15 13 19 19 H 1.48499 * 109.47050 * 210.00026 * 17 15 13 20 20 H 1.48500 * 109.47161 * 329.99778 * 17 15 13 21 21 C 1.40906 * 119.80286 * 0.50317 * 12 11 10 22 22 C 1.36297 * 119.89800 * 359.73440 * 21 12 11 23 23 C 1.50697 * 109.47595 * 175.00237 * 4 3 2 24 24 O 1.20817 * 120.00530 * 119.99850 * 23 4 3 25 25 O 1.34236 * 119.99705 * 300.00380 * 23 4 3 26 26 C 1.45197 * 116.99733 * 179.97438 * 25 23 4 27 27 C 1.53009 * 109.46789 * 180.02562 * 26 25 23 28 28 H 1.08999 * 109.47627 * 299.99911 * 1 2 3 29 29 H 1.09003 * 109.47046 * 60.00253 * 1 2 3 30 30 H 1.09007 * 109.47317 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47627 * 240.00089 * 2 1 3 32 32 H 1.08998 * 109.47130 * 120.00216 * 2 1 3 33 33 H 1.09008 * 109.46703 * 59.99664 * 3 2 1 34 34 H 1.08998 * 109.47129 * 300.00216 * 3 2 1 35 35 H 1.08002 * 119.94534 * 359.97438 * 10 9 7 36 36 H 1.08004 * 120.05042 * 179.74750 * 11 10 9 37 37 H 0.97000 * 120.00424 * 179.97438 * 16 15 13 38 38 H 1.07999 * 120.05172 * 179.70589 * 21 12 11 39 39 H 1.07997 * 119.94971 * 180.02562 * 22 21 12 40 40 H 1.08996 * 109.47111 * 299.99799 * 26 25 23 41 41 H 1.09004 * 109.46916 * 60.00574 * 26 25 23 42 42 H 1.08998 * 109.46574 * 299.99941 * 27 26 25 43 43 H 1.08994 * 109.47390 * 60.00130 * 27 26 25 44 44 H 1.08996 * 109.46834 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9337 0.8530 -0.8410 6 8 4.0535 0.8640 1.2416 7 6 4.2574 -0.4681 1.2572 8 8 4.0368 -1.1282 0.2611 9 6 4.7485 -1.1247 2.4833 10 6 4.9602 -2.5093 2.4970 11 6 5.4089 -3.1210 3.6293 12 6 5.6694 -2.3571 4.7841 13 6 6.1387 -2.9852 5.9571 14 1 5.9660 -2.5284 6.9204 15 6 6.8293 -4.2029 5.8722 16 7 7.3413 -4.5854 4.7329 17 14 7.0169 -5.2779 7.3883 18 1 5.8711 -6.2188 7.4729 19 1 8.2835 -6.0476 7.2956 20 1 7.0454 -4.4221 8.6015 21 6 5.4546 -0.9646 4.7659 22 6 5.0012 -0.3620 3.6306 23 6 4.0724 2.8579 -0.1231 24 8 4.7666 3.3307 0.7453 25 8 3.7485 3.5934 -1.1983 26 6 4.2673 4.9485 -1.2504 27 6 3.7957 5.6259 -2.5389 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.6766 1.9563 0.8900 34 1 1.6767 1.9563 -0.8899 35 1 4.7633 -3.0936 1.6103 36 1 5.5680 -4.1892 3.6402 37 1 7.8192 -5.4274 4.6742 38 1 5.6485 -0.3758 5.6502 39 1 4.8366 0.7053 3.6155 40 1 3.9027 5.5105 -0.3906 41 1 5.3568 4.9214 -1.2316 42 1 4.1599 5.0640 -3.3989 43 1 2.7063 5.6530 -2.5574 44 1 4.1855 6.6430 -2.5782 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000801855127.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:49 Heat of formation + Delta-G solvation = -186.654942 kcal Electronic energy + Delta-G solvation = -26562.790989 eV Core-core repulsion = 22636.914068 eV Total energy + Delta-G solvation = -3925.876921 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.11268 -41.15624 -39.36876 -37.98510 -37.35946 -35.89847 -35.68272 -32.85771 -32.18895 -31.55632 -30.96337 -28.00327 -26.40524 -24.62723 -23.76013 -22.98642 -22.36724 -22.06349 -21.48194 -19.44709 -19.26319 -18.54892 -18.21717 -17.82587 -17.24266 -17.15467 -16.81481 -15.87820 -15.74553 -15.33503 -15.24128 -15.00730 -14.59142 -14.45058 -14.08509 -14.07041 -13.85287 -13.66046 -13.59708 -13.29424 -13.01734 -12.98092 -12.89667 -12.75358 -12.66602 -12.51602 -12.42734 -12.25700 -11.85527 -11.72151 -11.65849 -11.58907 -11.43653 -11.31860 -11.20911 -11.17031 -9.65654 -9.54957 -8.86569 -6.57102 0.20819 0.87011 0.92673 1.12104 1.35649 1.40676 1.54093 1.85742 2.12805 2.14021 2.66012 3.33787 3.56128 3.62375 3.72134 3.95336 3.98568 4.04379 4.14949 4.22211 4.32316 4.34369 4.40917 4.53152 4.68434 4.73591 4.80231 4.88669 4.91245 4.92509 4.96150 5.06968 5.11438 5.18525 5.20322 5.23457 5.32117 5.33185 5.41740 5.53346 5.74752 5.90092 5.95831 6.13315 6.47298 6.49000 6.68377 6.79868 6.94702 8.08279 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.020594 B = 0.002688 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.268886 B =10415.954190 C =11183.858276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.122 4.122 3 C -0.118 4.118 4 C 0.091 3.909 5 H 0.122 0.878 6 O -0.344 6.344 7 C 0.525 3.475 8 O -0.549 6.549 9 C -0.290 4.290 10 C -0.035 4.035 11 C -0.202 4.202 12 C 0.106 3.894 13 C -0.456 4.456 14 H 0.095 0.905 15 C 0.033 3.967 16 N -0.792 5.792 17 Si 0.993 3.007 18 H -0.259 1.259 19 H -0.265 1.265 20 H -0.252 1.252 21 C -0.251 4.251 22 C -0.024 4.024 23 C 0.475 3.525 24 O -0.519 6.519 25 O -0.345 6.345 26 C 0.050 3.950 27 C -0.144 4.144 28 H 0.057 0.943 29 H 0.075 0.925 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.033 0.967 33 H 0.079 0.921 34 H 0.121 0.879 35 H 0.106 0.894 36 H 0.114 0.886 37 H 0.300 0.700 38 H 0.114 0.886 39 H 0.118 0.882 40 H 0.073 0.927 41 H 0.067 0.933 42 H 0.069 0.931 43 H 0.074 0.926 44 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.462 11.835 -9.654 17.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.160 4.160 3 C -0.155 4.155 4 C 0.035 3.965 5 H 0.139 0.861 6 O -0.262 6.262 7 C 0.377 3.623 8 O -0.443 6.443 9 C -0.292 4.292 10 C -0.054 4.054 11 C -0.221 4.221 12 C 0.102 3.898 13 C -0.483 4.483 14 H 0.113 0.887 15 C -0.187 4.187 16 N -0.415 5.415 17 Si 0.812 3.188 18 H -0.183 1.183 19 H -0.190 1.190 20 H -0.175 1.175 21 C -0.270 4.270 22 C -0.042 4.042 23 C 0.317 3.683 24 O -0.407 6.407 25 O -0.262 6.262 26 C -0.023 4.023 27 C -0.201 4.201 28 H 0.076 0.924 29 H 0.094 0.906 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.051 0.949 33 H 0.098 0.902 34 H 0.139 0.861 35 H 0.124 0.876 36 H 0.132 0.868 37 H 0.111 0.889 38 H 0.132 0.868 39 H 0.136 0.864 40 H 0.092 0.908 41 H 0.086 0.914 42 H 0.088 0.912 43 H 0.093 0.907 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -8.164 11.699 -9.845 17.333 hybrid contribution 0.652 -0.519 0.508 0.976 sum -7.512 11.180 -9.337 16.389 Atomic orbital electron populations 1.21717 0.93391 1.02212 1.02760 1.21548 0.97659 0.95072 1.01705 1.22032 0.88636 0.99330 1.05511 1.22177 0.97602 0.88360 0.88376 0.86100 1.86650 1.78232 1.24397 1.36908 1.21239 0.73411 0.79201 0.88435 1.90690 1.52482 1.64899 1.36209 1.18380 1.23984 0.93912 0.92966 1.20516 0.95077 0.92557 0.97256 1.20955 1.07335 0.99728 0.94084 1.18195 0.86612 0.91705 0.93272 1.20273 1.28668 1.04411 0.94904 0.88669 1.27095 0.92048 0.98387 1.01150 1.69772 1.21776 1.21170 1.28792 0.85023 0.78988 0.77695 0.77088 1.18318 1.18966 1.17537 1.20927 1.12920 0.94342 0.98803 1.20736 0.93157 0.98430 0.91903 1.23157 0.77253 0.88149 0.79719 1.90694 1.35934 1.72701 1.41408 1.86469 1.69709 1.28291 1.41771 1.23455 0.99374 0.77653 1.01804 1.21837 1.03206 1.00892 0.94161 0.92406 0.90591 0.92639 0.91595 0.94860 0.90219 0.86054 0.87625 0.86845 0.88904 0.86784 0.86364 0.90820 0.91431 0.91194 0.90702 0.87908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 9.91 71.98 0.71 -2.24 16 2 C -0.12 -3.31 4.59 30.59 0.14 -3.17 16 3 C -0.12 -2.86 4.89 30.59 0.15 -2.71 16 4 C 0.09 2.81 2.78 29.84 0.08 2.89 16 5 H 0.12 3.68 7.16 -2.39 -0.02 3.66 16 6 O -0.34 -13.58 8.58 -50.41 -0.43 -14.01 16 7 C 0.52 22.99 6.34 70.26 0.45 23.43 16 8 O -0.55 -24.29 13.51 19.79 0.27 -24.02 16 9 C -0.29 -13.90 5.89 -19.95 -0.12 -14.02 16 10 C -0.04 -1.75 9.52 22.26 0.21 -1.54 16 11 C -0.20 -10.51 8.63 22.47 0.19 -10.31 16 12 C 0.11 5.49 5.57 -21.28 -0.12 5.37 16 13 C -0.46 -22.60 9.04 23.46 0.21 -22.38 16 14 H 0.10 4.42 7.91 -2.91 -0.02 4.39 16 15 C 0.03 1.53 5.14 85.36 0.44 1.97 16 16 N -0.79 -38.31 10.95 21.88 0.24 -38.07 16 17 Si 0.99 34.21 29.60 68.60 2.03 36.24 16 18 H -0.26 -8.69 7.11 99.48 0.71 -7.99 16 19 H -0.27 -8.70 7.11 99.48 0.71 -7.99 16 20 H -0.25 -8.38 7.11 99.48 0.71 -7.68 16 21 C -0.25 -12.12 9.73 22.47 0.22 -11.90 16 22 C -0.02 -1.11 9.55 22.26 0.21 -0.89 16 23 C 0.47 14.16 7.33 71.24 0.52 14.68 16 24 O -0.52 -19.05 16.25 28.36 0.46 -18.59 16 25 O -0.35 -7.93 10.03 -51.47 -0.52 -8.45 16 26 C 0.05 0.89 6.19 71.99 0.45 1.33 16 27 C -0.14 -1.48 10.29 71.99 0.74 -0.74 16 28 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 31 H 0.07 1.86 7.79 -2.39 -0.02 1.84 16 32 H 0.03 1.13 6.05 -2.39 -0.01 1.12 16 33 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 34 H 0.12 2.16 8.00 -2.39 -0.02 2.15 16 35 H 0.11 5.04 7.63 -2.91 -0.02 5.02 16 36 H 0.11 6.00 6.16 -2.91 -0.02 5.99 16 37 H 0.30 12.85 8.29 -92.71 -0.77 12.09 16 38 H 0.11 5.05 8.06 -2.91 -0.02 5.02 16 39 H 0.12 5.07 7.59 -2.91 -0.02 5.05 16 40 H 0.07 1.28 8.13 -2.39 -0.02 1.26 16 41 H 0.07 1.25 8.13 -2.39 -0.02 1.23 16 42 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 43 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 44 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 Total: -1.00 -62.21 373.54 7.54 -54.67 By element: Atomic # 1 Polarization: 31.46 SS G_CDS: 1.00 Total: 32.46 kcal Atomic # 6 Polarization: -24.73 SS G_CDS: 4.49 Total: -20.23 kcal Atomic # 7 Polarization: -38.31 SS G_CDS: 0.24 Total: -38.07 kcal Atomic # 8 Polarization: -64.85 SS G_CDS: -0.22 Total: -65.07 kcal Atomic # 14 Polarization: 34.21 SS G_CDS: 2.03 Total: 36.24 kcal Total: -62.21 7.54 -54.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000801855127.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.984 kcal (2) G-P(sol) polarization free energy of solvation -62.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds