Wall clock time and date at job start Tue Mar 31 2020 12:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47261 * 2 1 4 4 C 1.52997 * 109.47070 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.47457 * 305.00136 * 4 3 2 6 6 O 1.45197 * 109.46919 * 65.00276 * 4 3 2 7 7 C 1.34779 * 117.00027 * 269.99703 * 6 4 3 8 8 O 1.21510 * 119.99643 * 0.02562 * 7 6 4 9 9 C 1.47501 * 119.99940 * 180.02562 * 7 6 4 10 10 C 1.40068 * 119.90242 * 180.02562 * 9 7 6 11 11 C 1.36300 * 120.10627 * 180.27583 * 10 9 7 12 12 C 1.40901 * 119.89267 * 359.52047 * 11 10 9 13 13 C 1.41091 * 120.09822 * 180.23439 * 12 11 10 14 14 H 1.08000 * 120.00248 * 204.79694 * 13 12 11 15 15 C 1.40250 * 119.99951 * 24.79101 * 13 12 11 16 16 N 1.30632 * 120.00017 * 17.74137 * 15 13 12 17 17 Si 1.86801 * 119.99972 * 197.74199 * 15 13 12 18 18 H 1.48508 * 109.47236 * 60.00243 * 17 15 13 19 19 H 1.48497 * 109.46865 * 179.97438 * 17 15 13 20 20 H 1.48493 * 109.47194 * 300.00277 * 17 15 13 21 21 C 1.40897 * 119.80304 * 0.47754 * 12 11 10 22 22 C 1.36301 * 119.89927 * 359.75417 * 21 12 11 23 23 C 1.50707 * 109.47213 * 185.00130 * 4 3 2 24 24 O 1.20820 * 119.99698 * 245.00136 * 23 4 3 25 25 O 1.34224 * 119.99811 * 65.00037 * 23 4 3 26 26 C 1.45204 * 117.00070 * 180.02562 * 25 23 4 27 27 C 1.52992 * 109.47336 * 180.02562 * 26 25 23 28 28 H 1.09005 * 109.47552 * 300.00358 * 1 2 3 29 29 H 1.09002 * 109.46952 * 59.99832 * 1 2 3 30 30 H 1.09001 * 109.47525 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46994 * 240.00016 * 2 1 3 32 32 H 1.09002 * 109.46952 * 120.00168 * 2 1 3 33 33 H 1.09007 * 109.47327 * 59.99890 * 3 2 1 34 34 H 1.09002 * 109.47274 * 299.99970 * 3 2 1 35 35 H 1.08008 * 119.94689 * 0.02562 * 10 9 7 36 36 H 1.08000 * 120.05511 * 179.74450 * 11 10 9 37 37 H 0.97002 * 120.00168 * 179.97438 * 16 15 13 38 38 H 1.08004 * 120.05034 * 179.73664 * 21 12 11 39 39 H 1.07996 * 119.94338 * 180.02562 * 22 21 12 40 40 H 1.09001 * 109.46793 * 299.99939 * 26 25 23 41 41 H 1.08997 * 109.47033 * 60.00073 * 26 25 23 42 42 H 1.09004 * 109.47311 * 59.99627 * 27 26 25 43 43 H 1.09000 * 109.47082 * 179.97438 * 27 26 25 44 44 H 1.08997 * 109.47539 * 300.00156 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9330 0.8530 0.8427 6 8 4.0544 0.8637 -1.2398 7 6 4.2584 -0.4685 -1.2549 8 8 4.0370 -1.1283 -0.2588 9 6 4.7504 -1.1254 -2.4805 10 6 4.9611 -2.5101 -2.4941 11 6 5.4210 -3.1206 -3.6226 12 6 5.6748 -2.3580 -4.7798 13 6 6.1462 -2.9862 -5.9519 14 1 6.7087 -2.4198 -6.6794 15 6 5.8845 -4.3463 -6.1723 16 7 4.9380 -4.9465 -5.5011 17 14 6.8894 -5.2998 -7.4255 18 1 8.3227 -5.2685 -7.0379 19 1 6.4196 -6.7078 -7.4688 20 1 6.7254 -4.6812 -8.7654 21 6 5.4614 -0.9654 -4.7616 22 6 5.0059 -0.3627 -3.6271 23 6 4.0724 2.8578 0.1245 24 8 4.6910 3.3609 -0.7832 25 8 3.8325 3.5596 1.2433 26 6 4.3456 4.9170 1.2927 27 6 3.9773 5.5529 2.6346 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 4.7627 -3.0944 -1.6076 36 1 5.5871 -4.1877 -3.6309 37 1 4.7567 -5.8871 -5.6538 38 1 5.6587 -0.3763 -5.6451 39 1 4.8416 0.7046 -3.6124 40 1 5.4301 4.8996 1.1848 41 1 3.9091 5.5002 0.4819 42 1 4.4141 4.9696 3.4453 43 1 4.3629 6.5718 2.6719 44 1 2.8929 5.5703 2.7431 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000801855128.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:53 Heat of formation + Delta-G solvation = -175.174922 kcal Electronic energy + Delta-G solvation = -26568.026762 eV Core-core repulsion = 22642.647652 eV Total energy + Delta-G solvation = -3925.379110 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.80761 -39.68498 -37.59900 -36.73726 -35.87369 -34.58722 -33.96701 -32.07510 -30.51503 -29.91931 -29.46233 -26.23419 -25.33131 -23.45346 -22.41188 -21.33065 -21.17693 -20.67333 -19.85628 -17.92895 -17.60668 -17.07547 -16.88155 -16.68076 -15.76216 -15.67647 -15.32965 -14.62752 -14.25386 -14.06641 -13.81314 -13.39806 -13.35705 -13.07313 -13.06193 -12.68498 -12.59977 -12.24086 -12.14001 -12.04728 -11.92797 -11.77897 -11.55989 -11.40137 -11.27027 -11.17850 -11.03401 -10.73928 -10.71122 -10.54824 -10.43585 -10.15563 -10.02020 -9.60293 -9.50958 -9.40352 -7.76785 -7.66236 -7.11526 -4.69807 1.99095 2.09469 2.13436 2.86442 2.91336 2.94363 3.02529 3.49261 3.58914 3.69293 4.41706 4.43750 4.65952 4.71066 4.75637 4.90560 5.00831 5.10213 5.23757 5.40161 5.49064 5.49912 5.51145 5.57945 5.67525 5.81743 5.84671 5.90597 6.15859 6.20249 6.24339 6.24781 6.31332 6.49159 6.72434 6.79449 6.89358 7.03209 7.05678 7.39749 7.59593 7.65304 7.77016 7.84389 7.99287 8.33817 8.54481 8.63296 8.68354 9.79606 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.020980 B = 0.002702 C = 0.002492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.290785 B =10361.987037 C =11231.364553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C -0.126 4.126 4 C 0.100 3.900 5 H 0.119 0.881 6 O -0.335 6.335 7 C 0.516 3.484 8 O -0.542 6.542 9 C -0.275 4.275 10 C -0.031 4.031 11 C -0.185 4.185 12 C 0.132 3.868 13 C -0.433 4.433 14 H 0.087 0.913 15 C 0.072 3.928 16 N -0.762 5.762 17 Si 0.917 3.083 18 H -0.259 1.259 19 H -0.275 1.275 20 H -0.261 1.261 21 C -0.240 4.240 22 C -0.026 4.026 23 C 0.465 3.535 24 O -0.483 6.483 25 O -0.355 6.355 26 C 0.061 3.939 27 C -0.152 4.152 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.076 0.924 35 H 0.102 0.898 36 H 0.123 0.877 37 H 0.290 0.710 38 H 0.100 0.900 39 H 0.104 0.896 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.067 0.933 43 H 0.080 0.920 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.413 11.176 10.304 15.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C -0.164 4.164 4 C 0.043 3.957 5 H 0.136 0.864 6 O -0.253 6.253 7 C 0.369 3.631 8 O -0.436 6.436 9 C -0.277 4.277 10 C -0.049 4.049 11 C -0.204 4.204 12 C 0.129 3.871 13 C -0.460 4.460 14 H 0.105 0.895 15 C -0.150 4.150 16 N -0.385 5.385 17 Si 0.740 3.260 18 H -0.183 1.183 19 H -0.199 1.199 20 H -0.185 1.185 21 C -0.259 4.259 22 C -0.044 4.044 23 C 0.306 3.694 24 O -0.368 6.368 25 O -0.273 6.273 26 C -0.013 4.013 27 C -0.209 4.209 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.106 0.894 34 H 0.095 0.905 35 H 0.120 0.880 36 H 0.141 0.859 37 H 0.101 0.899 38 H 0.118 0.882 39 H 0.122 0.878 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.086 0.914 43 H 0.098 0.902 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.423 10.970 10.351 15.717 hybrid contribution 0.421 -0.301 -0.526 0.738 sum -4.002 10.669 9.825 15.045 Atomic orbital electron populations 1.21752 0.95695 1.01807 1.01358 1.21598 0.95645 0.94901 1.03911 1.21998 0.90918 0.99685 1.03766 1.21796 0.95671 0.88165 0.90077 0.86382 1.86729 1.78226 1.25667 1.34679 1.21660 0.73711 0.78497 0.89241 1.90708 1.52282 1.64423 1.36138 1.18148 1.23925 0.93655 0.91981 1.20437 0.95222 0.91810 0.97473 1.20976 1.07334 1.00251 0.91855 1.17852 0.85654 0.91233 0.92391 1.19916 1.27970 0.94003 1.04062 0.89453 1.26175 0.93842 0.98127 0.96897 1.69729 1.21767 1.12860 1.34110 0.86209 0.80931 0.78274 0.80614 1.18341 1.19928 1.18543 1.20728 1.12063 0.95354 0.97750 1.20594 0.94014 0.97718 0.92105 1.23309 0.77383 0.88492 0.80178 1.90701 1.36354 1.70308 1.39416 1.86469 1.72781 1.27987 1.40082 1.23065 0.99534 0.79144 0.99518 1.21806 1.03057 1.00458 0.95547 0.92970 0.92860 0.92485 0.91202 0.90823 0.89443 0.90490 0.87958 0.85898 0.89874 0.88176 0.87800 0.91067 0.91049 0.91388 0.90165 0.91401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.91 37.16 0.37 -1.36 16 2 C -0.12 -1.75 4.58 -26.73 -0.12 -1.88 16 3 C -0.13 -1.66 4.91 -26.74 -0.13 -1.79 16 4 C 0.10 1.58 2.78 -27.88 -0.08 1.50 16 5 H 0.12 1.82 7.16 -51.93 -0.37 1.45 16 6 O -0.33 -6.58 8.59 -47.39 -0.41 -6.99 16 7 C 0.52 11.12 6.34 34.51 0.22 11.34 16 8 O -0.54 -11.82 13.51 -19.27 -0.26 -12.08 16 9 C -0.27 -6.43 5.89 -104.75 -0.62 -7.04 16 10 C -0.03 -0.73 9.52 -39.59 -0.38 -1.11 16 11 C -0.19 -4.64 8.63 -39.27 -0.34 -4.98 16 12 C 0.13 3.34 5.57 -106.80 -0.60 2.75 16 13 C -0.43 -10.57 9.04 -37.74 -0.34 -10.91 16 14 H 0.09 2.01 7.91 -52.49 -0.42 1.60 16 15 C 0.07 1.66 5.14 -17.31 -0.09 1.57 16 16 N -0.76 -18.12 10.95 55.56 0.61 -17.51 16 17 Si 0.92 16.97 29.60 -169.99 -5.03 11.93 16 18 H -0.26 -4.79 7.11 56.52 0.40 -4.39 16 19 H -0.27 -4.95 7.11 56.52 0.40 -4.55 16 20 H -0.26 -4.77 7.11 56.52 0.40 -4.37 16 21 C -0.24 -5.69 9.73 -39.27 -0.38 -6.07 16 22 C -0.03 -0.59 9.55 -39.59 -0.38 -0.97 16 23 C 0.47 7.13 7.29 36.01 0.26 7.39 16 24 O -0.48 -8.83 16.26 -25.39 -0.41 -9.24 16 25 O -0.36 -4.41 10.19 -39.24 -0.40 -4.81 16 26 C 0.06 0.59 6.19 37.15 0.23 0.82 16 27 C -0.15 -0.98 10.29 37.15 0.38 -0.60 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 1.22 6.06 -51.93 -0.31 0.90 16 32 H 0.07 1.08 7.79 -51.93 -0.40 0.67 16 33 H 0.09 0.93 8.12 -51.93 -0.42 0.51 16 34 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.10 2.35 7.63 -52.48 -0.40 1.95 16 36 H 0.12 3.11 6.16 -52.49 -0.32 2.79 16 37 H 0.29 6.19 8.29 -40.82 -0.34 5.85 16 38 H 0.10 2.20 8.06 -52.48 -0.42 1.77 16 39 H 0.10 2.22 7.59 -52.49 -0.40 1.82 16 40 H 0.07 0.69 8.13 -51.93 -0.42 0.27 16 41 H 0.07 0.67 8.13 -51.93 -0.42 0.25 16 42 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 373.81 15.07 5.63 5.63 Total: -1.00 -28.17 373.81 -8.67 -36.84 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -6.41 Total: 7.57 kcal Atomic # 6 Polarization: -9.36 SS G_CDS: -1.99 Total: -11.35 kcal Atomic # 7 Polarization: -18.12 SS G_CDS: 0.61 Total: -17.51 kcal Atomic # 8 Polarization: -31.64 SS G_CDS: -1.48 Total: -33.12 kcal Atomic # 14 Polarization: 16.97 SS G_CDS: -5.03 Total: 11.93 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -28.17 -8.67 -36.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000801855128.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.337 kcal (2) G-P(sol) polarization free energy of solvation -28.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds