Wall clock time and date at job start Tue Mar 31 2020 12:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47261 * 2 1 4 4 C 1.52997 * 109.47070 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.47457 * 305.00136 * 4 3 2 6 6 O 1.45197 * 109.46919 * 65.00276 * 4 3 2 7 7 C 1.34779 * 117.00027 * 269.99703 * 6 4 3 8 8 O 1.21510 * 119.99643 * 0.02562 * 7 6 4 9 9 C 1.47501 * 119.99940 * 180.02562 * 7 6 4 10 10 C 1.40068 * 119.90242 * 180.02562 * 9 7 6 11 11 C 1.36300 * 120.10627 * 180.27583 * 10 9 7 12 12 C 1.40901 * 119.89267 * 359.52047 * 11 10 9 13 13 C 1.41091 * 120.09822 * 180.23439 * 12 11 10 14 14 H 1.08000 * 120.00248 * 204.79694 * 13 12 11 15 15 C 1.40250 * 119.99951 * 24.79101 * 13 12 11 16 16 N 1.30632 * 120.00017 * 17.74137 * 15 13 12 17 17 Si 1.86801 * 119.99972 * 197.74199 * 15 13 12 18 18 H 1.48508 * 109.47236 * 60.00243 * 17 15 13 19 19 H 1.48497 * 109.46865 * 179.97438 * 17 15 13 20 20 H 1.48493 * 109.47194 * 300.00277 * 17 15 13 21 21 C 1.40897 * 119.80304 * 0.47754 * 12 11 10 22 22 C 1.36301 * 119.89927 * 359.75417 * 21 12 11 23 23 C 1.50707 * 109.47213 * 185.00130 * 4 3 2 24 24 O 1.20820 * 119.99698 * 245.00136 * 23 4 3 25 25 O 1.34224 * 119.99811 * 65.00037 * 23 4 3 26 26 C 1.45204 * 117.00070 * 180.02562 * 25 23 4 27 27 C 1.52992 * 109.47336 * 180.02562 * 26 25 23 28 28 H 1.09005 * 109.47552 * 300.00358 * 1 2 3 29 29 H 1.09002 * 109.46952 * 59.99832 * 1 2 3 30 30 H 1.09001 * 109.47525 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46994 * 240.00016 * 2 1 3 32 32 H 1.09002 * 109.46952 * 120.00168 * 2 1 3 33 33 H 1.09007 * 109.47327 * 59.99890 * 3 2 1 34 34 H 1.09002 * 109.47274 * 299.99970 * 3 2 1 35 35 H 1.08008 * 119.94689 * 0.02562 * 10 9 7 36 36 H 1.08000 * 120.05511 * 179.74450 * 11 10 9 37 37 H 0.97002 * 120.00168 * 179.97438 * 16 15 13 38 38 H 1.08004 * 120.05034 * 179.73664 * 21 12 11 39 39 H 1.07996 * 119.94338 * 180.02562 * 22 21 12 40 40 H 1.09001 * 109.46793 * 299.99939 * 26 25 23 41 41 H 1.08997 * 109.47033 * 60.00073 * 26 25 23 42 42 H 1.09004 * 109.47311 * 59.99627 * 27 26 25 43 43 H 1.09000 * 109.47082 * 179.97438 * 27 26 25 44 44 H 1.08997 * 109.47539 * 300.00156 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9330 0.8530 0.8427 6 8 4.0544 0.8637 -1.2398 7 6 4.2584 -0.4685 -1.2549 8 8 4.0370 -1.1283 -0.2588 9 6 4.7504 -1.1254 -2.4805 10 6 4.9611 -2.5101 -2.4941 11 6 5.4210 -3.1206 -3.6226 12 6 5.6748 -2.3580 -4.7798 13 6 6.1462 -2.9862 -5.9519 14 1 6.7087 -2.4198 -6.6794 15 6 5.8845 -4.3463 -6.1723 16 7 4.9380 -4.9465 -5.5011 17 14 6.8894 -5.2998 -7.4255 18 1 8.3227 -5.2685 -7.0379 19 1 6.4196 -6.7078 -7.4688 20 1 6.7254 -4.6812 -8.7654 21 6 5.4614 -0.9654 -4.7616 22 6 5.0059 -0.3627 -3.6271 23 6 4.0724 2.8578 0.1245 24 8 4.6910 3.3609 -0.7832 25 8 3.8325 3.5596 1.2433 26 6 4.3456 4.9170 1.2927 27 6 3.9773 5.5529 2.6346 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 4.7627 -3.0944 -1.6076 36 1 5.5871 -4.1877 -3.6309 37 1 4.7567 -5.8871 -5.6538 38 1 5.6587 -0.3763 -5.6451 39 1 4.8416 0.7046 -3.6124 40 1 5.4301 4.8996 1.1848 41 1 3.9091 5.5002 0.4819 42 1 4.4141 4.9696 3.4453 43 1 4.3629 6.5718 2.6719 44 1 2.8929 5.5703 2.7431 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000801855128.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:52 Heat of formation + Delta-G solvation = -186.529619 kcal Electronic energy + Delta-G solvation = -26568.519138 eV Core-core repulsion = 22642.647652 eV Total energy + Delta-G solvation = -3925.871486 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.11163 -41.15538 -39.36806 -37.98984 -37.34969 -35.90227 -35.68549 -32.85788 -32.18788 -31.55559 -30.96694 -28.00196 -26.42169 -24.62395 -23.75809 -22.98555 -22.37765 -22.06441 -21.47248 -19.44472 -19.27379 -18.52701 -18.21393 -17.84456 -17.24753 -17.13691 -16.82558 -15.88822 -15.74570 -15.33096 -15.23904 -15.00526 -14.59438 -14.45304 -14.07554 -14.06052 -13.82968 -13.72328 -13.61377 -13.26294 -13.01754 -12.96946 -12.86096 -12.81212 -12.67263 -12.51716 -12.40395 -12.25720 -11.88904 -11.72662 -11.67267 -11.59040 -11.43559 -11.32219 -11.20638 -11.15823 -9.65515 -9.54806 -8.86311 -6.56877 0.21233 0.87758 0.91589 1.12256 1.36362 1.41400 1.52569 1.85892 2.12290 2.14657 2.66528 3.34653 3.55843 3.62249 3.71835 3.94542 3.98654 4.04468 4.13936 4.21713 4.32368 4.34433 4.40928 4.51833 4.67094 4.72893 4.79426 4.87180 4.91241 4.92437 4.96080 5.06973 5.11436 5.18549 5.19372 5.22657 5.31783 5.33214 5.40514 5.53394 5.74846 5.90121 5.95874 6.13421 6.47218 6.49169 6.68397 6.79969 6.94845 8.08280 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.020980 B = 0.002702 C = 0.002492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.290785 B =10361.987037 C =11231.364553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.122 4.122 3 C -0.118 4.118 4 C 0.091 3.909 5 H 0.122 0.878 6 O -0.344 6.344 7 C 0.525 3.475 8 O -0.549 6.549 9 C -0.290 4.290 10 C -0.035 4.035 11 C -0.202 4.202 12 C 0.106 3.894 13 C -0.457 4.457 14 H 0.095 0.905 15 C 0.034 3.966 16 N -0.791 5.791 17 Si 0.992 3.008 18 H -0.257 1.257 19 H -0.265 1.265 20 H -0.254 1.254 21 C -0.251 4.251 22 C -0.024 4.024 23 C 0.475 3.525 24 O -0.518 6.518 25 O -0.346 6.346 26 C 0.050 3.950 27 C -0.145 4.145 28 H 0.076 0.924 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.031 0.969 32 H 0.067 0.933 33 H 0.121 0.879 34 H 0.078 0.922 35 H 0.106 0.894 36 H 0.114 0.886 37 H 0.300 0.700 38 H 0.114 0.886 39 H 0.118 0.882 40 H 0.068 0.932 41 H 0.074 0.926 42 H 0.069 0.931 43 H 0.103 0.897 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.893 12.203 10.849 17.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.159 4.159 3 C -0.155 4.155 4 C 0.035 3.965 5 H 0.139 0.861 6 O -0.262 6.262 7 C 0.377 3.623 8 O -0.443 6.443 9 C -0.293 4.293 10 C -0.054 4.054 11 C -0.221 4.221 12 C 0.102 3.898 13 C -0.483 4.483 14 H 0.113 0.887 15 C -0.186 4.186 16 N -0.414 5.414 17 Si 0.811 3.189 18 H -0.181 1.181 19 H -0.189 1.189 20 H -0.178 1.178 21 C -0.270 4.270 22 C -0.042 4.042 23 C 0.318 3.682 24 O -0.406 6.406 25 O -0.263 6.263 26 C -0.023 4.023 27 C -0.201 4.201 28 H 0.095 0.905 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.050 0.950 32 H 0.085 0.915 33 H 0.140 0.860 34 H 0.097 0.903 35 H 0.124 0.876 36 H 0.132 0.868 37 H 0.111 0.889 38 H 0.132 0.868 39 H 0.136 0.864 40 H 0.086 0.914 41 H 0.092 0.908 42 H 0.088 0.912 43 H 0.121 0.879 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.927 12.024 10.933 16.982 hybrid contribution 0.518 -0.519 -0.574 0.931 sum -4.409 11.505 10.359 16.097 Atomic orbital electron populations 1.21722 0.93447 1.02194 1.02760 1.21542 0.97629 0.95079 1.01689 1.22026 0.88756 0.99309 1.05456 1.22169 0.97476 0.88461 0.88394 0.86054 1.86656 1.78190 1.24400 1.36953 1.21243 0.73389 0.79206 0.88466 1.90688 1.52437 1.64906 1.36225 1.18377 1.24019 0.93709 0.93173 1.20514 0.95141 0.92422 0.97327 1.20956 1.08718 0.99942 0.92499 1.18187 0.86470 0.92126 0.92992 1.20246 1.28520 0.95388 1.04157 0.88687 1.27082 0.94387 0.98404 0.98754 1.69764 1.22690 1.13709 1.35208 0.85085 0.78919 0.76985 0.77903 1.18135 1.18883 1.17756 1.20927 1.12361 0.95134 0.98610 1.20735 0.93398 0.98360 0.91734 1.23138 0.76504 0.88244 0.80361 1.90691 1.38061 1.71060 1.40800 1.86470 1.72327 1.29286 1.38250 1.23454 0.99480 0.77648 1.01690 1.21838 1.03634 1.01287 0.93370 0.90471 0.92503 0.92694 0.95003 0.91471 0.86044 0.90318 0.87622 0.86831 0.88876 0.86795 0.86376 0.91393 0.90771 0.91217 0.87874 0.90734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 9.91 71.98 0.71 -2.37 16 2 C -0.12 -3.38 4.58 30.59 0.14 -3.24 16 3 C -0.12 -2.92 4.91 30.59 0.15 -2.77 16 4 C 0.09 2.81 2.78 29.85 0.08 2.90 16 5 H 0.12 3.67 7.16 -2.39 -0.02 3.65 16 6 O -0.34 -13.59 8.59 -50.52 -0.43 -14.02 16 7 C 0.52 22.97 6.34 70.26 0.45 23.42 16 8 O -0.55 -24.26 13.51 19.80 0.27 -23.99 16 9 C -0.29 -13.92 5.89 -19.95 -0.12 -14.04 16 10 C -0.04 -1.75 9.52 22.26 0.21 -1.54 16 11 C -0.20 -10.51 8.63 22.47 0.19 -10.32 16 12 C 0.11 5.49 5.57 -21.28 -0.12 5.37 16 13 C -0.46 -22.62 9.04 23.46 0.21 -22.40 16 14 H 0.10 4.40 7.91 -2.91 -0.02 4.38 16 15 C 0.03 1.56 5.14 85.36 0.44 2.00 16 16 N -0.79 -38.04 10.95 21.88 0.24 -37.80 16 17 Si 0.99 34.13 29.60 68.60 2.03 36.17 16 18 H -0.26 -8.73 7.11 99.48 0.71 -8.02 16 19 H -0.26 -8.61 7.11 99.48 0.71 -7.90 16 20 H -0.25 -8.39 7.11 99.48 0.71 -7.69 16 21 C -0.25 -12.15 9.73 22.47 0.22 -11.93 16 22 C -0.02 -1.11 9.55 22.26 0.21 -0.90 16 23 C 0.48 14.09 7.29 71.24 0.52 14.61 16 24 O -0.52 -18.80 16.26 28.34 0.46 -18.34 16 25 O -0.35 -7.96 10.19 -51.36 -0.52 -8.48 16 26 C 0.05 0.88 6.19 71.98 0.45 1.33 16 27 C -0.14 -1.48 10.29 71.98 0.74 -0.74 16 28 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 29 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.03 1.12 6.06 -2.39 -0.01 1.10 16 32 H 0.07 1.93 7.79 -2.39 -0.02 1.91 16 33 H 0.12 2.20 8.12 -2.38 -0.02 2.18 16 34 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.11 5.04 7.63 -2.91 -0.02 5.01 16 36 H 0.11 6.00 6.16 -2.91 -0.02 5.98 16 37 H 0.30 12.82 8.29 -92.71 -0.77 12.06 16 38 H 0.11 5.04 8.06 -2.91 -0.02 5.02 16 39 H 0.12 5.08 7.59 -2.91 -0.02 5.06 16 40 H 0.07 1.25 8.13 -2.39 -0.02 1.23 16 41 H 0.07 1.28 8.13 -2.39 -0.02 1.26 16 42 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 43 H 0.10 0.62 8.14 -2.39 -0.02 0.61 16 44 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 Total: -1.00 -61.92 373.81 7.53 -54.39 By element: Atomic # 1 Polarization: 31.69 SS G_CDS: 1.00 Total: 32.69 kcal Atomic # 6 Polarization: -25.11 SS G_CDS: 4.49 Total: -20.62 kcal Atomic # 7 Polarization: -38.04 SS G_CDS: 0.24 Total: -37.80 kcal Atomic # 8 Polarization: -64.60 SS G_CDS: -0.23 Total: -64.83 kcal Atomic # 14 Polarization: 34.13 SS G_CDS: 2.03 Total: 36.17 kcal Total: -61.92 7.53 -54.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000801855128.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.137 kcal (2) G-P(sol) polarization free energy of solvation -61.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds