Wall clock time and date at job start Tue Mar 31 2020 12:38:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.46833 * 2 1 4 4 C 1.53001 * 109.47088 * 60.00033 * 3 2 1 5 5 C 1.53008 * 109.47250 * 300.00316 * 3 2 1 6 6 C 1.50697 * 109.47286 * 180.02562 * 3 2 1 7 7 O 1.20759 * 119.99900 * 0.02562 * 6 3 2 8 8 C 1.50705 * 120.00253 * 179.97438 * 6 3 2 9 9 O 1.45192 * 109.46831 * 179.97438 * 8 6 3 10 10 C 1.34763 * 116.99726 * 179.97438 * 9 8 6 11 11 O 1.21513 * 119.99703 * 0.02562 * 10 9 8 12 12 C 1.47398 * 120.00219 * 180.02562 * 10 9 8 13 13 C 1.39729 * 120.19992 * 359.97438 * 12 10 9 14 14 C 1.37805 * 119.91272 * 179.97438 * 13 12 10 15 15 C 1.38588 * 120.33007 * 0.02562 * 14 13 12 16 16 C 1.38028 * 120.41707 * 359.97438 * 15 14 13 17 17 C 1.38832 * 120.07606 * 359.97438 * 16 15 14 18 18 O 1.35505 * 120.16557 * 179.97438 * 17 16 15 19 19 C 1.34808 * 116.99939 * 354.39821 * 18 17 16 20 20 H 1.08001 * 120.00267 * 5.06438 * 19 18 17 21 21 C 1.38707 * 119.99753 * 185.06265 * 19 18 17 22 22 N 1.31517 * 119.99994 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99839 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47364 * 359.97438 * 23 21 19 25 25 H 1.48505 * 109.47284 * 119.99880 * 23 21 19 26 26 H 1.48505 * 109.47333 * 240.00171 * 23 21 19 27 27 H 1.08998 * 109.47135 * 60.00335 * 1 2 3 28 28 H 1.08997 * 109.46695 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.46873 * 299.99920 * 1 2 3 30 30 H 1.08999 * 109.46888 * 240.00839 * 2 1 3 31 31 H 1.08990 * 109.47295 * 119.99938 * 2 1 3 32 32 H 1.09007 * 109.47180 * 180.02562 * 4 3 2 33 33 H 1.09005 * 109.46978 * 299.99897 * 4 3 2 34 34 H 1.08990 * 109.47130 * 60.00007 * 4 3 2 35 35 H 1.08999 * 109.46691 * 299.99841 * 5 3 2 36 36 H 1.08995 * 109.46944 * 59.99927 * 5 3 2 37 37 H 1.08999 * 109.47092 * 180.02562 * 5 3 2 38 38 H 1.09000 * 109.46543 * 60.00229 * 8 6 3 39 39 H 1.08994 * 109.46991 * 300.00154 * 8 6 3 40 40 H 1.07997 * 120.04805 * 0.26151 * 13 12 10 41 41 H 1.07992 * 119.83705 * 180.02562 * 14 13 12 42 42 H 1.08000 * 119.79247 * 179.97438 * 15 14 13 43 43 H 1.08000 * 119.96099 * 180.02562 * 16 15 14 44 44 H 0.97001 * 119.99735 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1637 1.2493 5 6 1.5299 2.1638 -1.2493 6 6 3.5470 1.4426 -0.0006 7 8 4.1508 0.3969 -0.0015 8 6 4.3004 2.7478 -0.0013 9 8 5.7279 2.4825 -0.0013 10 6 6.5488 3.5512 -0.0024 11 8 6.0843 4.6741 -0.0029 12 6 8.0101 3.3582 -0.0029 13 6 8.5488 2.0689 -0.0018 14 6 9.9158 1.8953 -0.0028 15 6 10.7608 2.9938 -0.0045 16 6 10.2434 4.2734 -0.0057 17 6 8.8688 4.4681 -0.0057 18 8 8.3589 5.7236 -0.0063 19 6 9.2361 6.7405 0.1103 20 1 10.2974 6.5402 0.1165 21 6 8.7758 8.0441 0.2225 22 7 7.4834 8.2880 0.2155 23 14 9.9913 9.4533 0.3834 24 1 11.3761 8.9171 0.3656 25 1 9.8102 10.3953 -0.7503 26 1 9.7542 10.1679 1.6635 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5137 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 1.8929 3.1916 1.2490 33 1 0.4399 2.1637 1.2492 34 1 1.8933 1.6500 2.1392 35 1 1.8933 1.6500 -2.1392 36 1 0.4399 2.1638 -1.2492 37 1 1.8936 3.1914 -1.2495 38 1 4.0374 3.3195 0.8886 39 1 4.0367 3.3191 -0.8913 40 1 7.8947 1.2096 -0.0047 41 1 10.3308 0.8983 -0.0023 42 1 11.8309 2.8477 -0.0049 43 1 10.9087 5.1242 -0.0074 44 1 7.1615 9.1997 0.2935 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000811101952.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:26 Heat of formation + Delta-G solvation = -131.093890 kcal Electronic energy + Delta-G solvation = -26754.873776 eV Core-core repulsion = 22831.406163 eV Total energy + Delta-G solvation = -3923.467613 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.44587 -39.64557 -38.56754 -36.61065 -36.43049 -35.48118 -32.43391 -31.27650 -30.63735 -28.99537 -28.19005 -27.66596 -25.50217 -25.13720 -23.50869 -21.79188 -21.30168 -20.22234 -18.50568 -18.08851 -17.56346 -16.79498 -16.19255 -16.13381 -15.99213 -15.14093 -15.01265 -14.63486 -14.40476 -14.38896 -14.12623 -13.79651 -13.70422 -13.44206 -13.04940 -12.90082 -12.65239 -12.42119 -12.39948 -12.07350 -12.02965 -11.85378 -11.77907 -11.49580 -11.37904 -11.13869 -10.96116 -10.88962 -10.85848 -10.79129 -10.49221 -10.24209 -9.84550 -9.56236 -9.23890 -8.95849 -8.33970 -7.39908 -6.53939 -4.13364 1.57761 1.84767 2.29901 2.89864 3.07193 3.08271 3.13930 3.40387 3.86658 3.99695 4.35251 4.52663 4.55018 4.68438 4.98936 5.02505 5.08922 5.11575 5.17466 5.26790 5.28723 5.33736 5.37873 5.48002 5.54755 5.57546 5.60134 5.67767 5.74170 5.74459 5.76429 5.89280 6.01885 6.04341 6.12482 6.14429 6.55414 6.63547 6.85073 6.93548 7.08223 7.21004 7.27314 7.40256 7.64609 7.85028 8.63939 8.86644 9.55646 10.59966 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.015592 B = 0.003150 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.354403 B = 8885.905457 C =10475.623507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.106 4.106 3 C -0.104 4.104 4 C -0.146 4.146 5 C -0.146 4.146 6 C 0.366 3.634 7 O -0.428 6.428 8 C 0.017 3.983 9 O -0.350 6.350 10 C 0.497 3.503 11 O -0.476 6.476 12 C -0.216 4.216 13 C -0.014 4.014 14 C -0.234 4.234 15 C -0.042 4.042 16 C -0.239 4.239 17 C 0.192 3.808 18 O -0.126 6.126 19 C -0.402 4.402 20 H 0.097 0.903 21 C 0.045 3.955 22 N -0.833 5.833 23 Si 0.943 3.057 24 H -0.265 1.265 25 H -0.274 1.274 26 H -0.274 1.274 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.073 0.927 37 H 0.067 0.933 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.126 0.874 41 H 0.113 0.887 42 H 0.113 0.887 43 H 0.135 0.865 44 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.553 -11.681 -0.230 15.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.143 4.143 3 C -0.105 4.105 4 C -0.203 4.203 5 C -0.203 4.203 6 C 0.238 3.762 7 O -0.298 6.298 8 C -0.058 4.058 9 O -0.268 6.268 10 C 0.343 3.657 11 O -0.363 6.363 12 C -0.219 4.219 13 C -0.032 4.032 14 C -0.253 4.253 15 C -0.061 4.061 16 C -0.258 4.258 17 C 0.133 3.867 18 O -0.024 6.024 19 C -0.478 4.478 20 H 0.114 0.886 21 C -0.163 4.163 22 N -0.464 5.464 23 Si 0.767 3.233 24 H -0.189 1.189 25 H -0.199 1.199 26 H -0.199 1.199 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.092 0.908 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.092 0.908 37 H 0.086 0.914 38 H 0.119 0.881 39 H 0.119 0.881 40 H 0.144 0.856 41 H 0.131 0.869 42 H 0.131 0.869 43 H 0.152 0.848 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.817 -11.555 -0.235 15.164 hybrid contribution 0.570 0.918 0.070 1.083 sum -9.247 -10.637 -0.165 14.095 Atomic orbital electron populations 1.21904 0.95311 1.01813 1.02176 1.21413 0.95850 0.93786 1.03263 1.21142 0.92317 0.98493 0.98514 1.21956 1.02230 1.00538 0.95566 1.21957 1.02231 1.00534 0.95565 1.24520 0.90967 0.89423 0.71261 1.90399 1.71262 1.34521 1.33640 1.23239 0.80046 0.97550 1.04992 1.86615 1.16143 1.37986 1.86093 1.21203 0.87685 0.82343 0.74475 1.91001 1.76785 1.23935 1.44554 1.17975 0.87493 0.92742 1.23688 1.21023 0.95220 0.94802 0.92195 1.20557 0.93112 0.98089 1.13499 1.20982 0.98822 0.92251 0.94044 1.21109 0.94436 0.97912 1.12380 1.19218 0.90989 0.85791 0.90731 1.84135 1.35309 1.09696 1.73269 1.21586 0.89368 0.84253 1.52571 0.88576 1.25416 0.97025 0.97886 0.96009 1.70123 1.12613 1.21349 1.42296 0.85626 0.79407 0.79826 0.78437 1.18878 1.19941 1.19941 0.92261 0.92605 0.92264 0.91293 0.91290 0.91400 0.90801 0.91949 0.91960 0.90794 0.91405 0.88114 0.88123 0.85572 0.86908 0.86908 0.84774 0.91790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.21 37.16 0.34 -0.72 16 2 C -0.11 -0.97 4.28 -26.73 -0.11 -1.08 16 3 C -0.10 -1.00 0.65 -155.66 -0.10 -1.10 16 4 C -0.15 -1.21 7.90 37.16 0.29 -0.92 16 5 C -0.15 -1.21 7.90 37.16 0.29 -0.91 16 6 C 0.37 4.94 6.05 -29.03 -0.18 4.77 16 7 O -0.43 -7.07 16.12 -13.71 -0.22 -7.29 16 8 C 0.02 0.26 5.23 36.01 0.19 0.45 16 9 O -0.35 -6.85 9.01 -47.36 -0.43 -7.28 16 10 C 0.50 11.47 7.89 34.46 0.27 11.74 16 11 O -0.48 -12.64 14.96 -26.59 -0.40 -13.04 16 12 C -0.22 -4.93 5.89 -104.82 -0.62 -5.55 16 13 C -0.01 -0.27 9.61 -39.18 -0.38 -0.64 16 14 C -0.23 -4.04 10.02 -39.61 -0.40 -4.43 16 15 C -0.04 -0.75 10.03 -39.53 -0.40 -1.15 16 16 C -0.24 -5.11 9.16 -39.44 -0.36 -5.47 16 17 C 0.19 4.77 6.66 -38.58 -0.26 4.52 16 18 O -0.13 -3.65 7.84 -20.99 -0.16 -3.82 16 19 C -0.40 -11.14 9.49 30.91 0.29 -10.84 16 20 H 0.10 2.41 5.21 -52.49 -0.27 2.14 16 21 C 0.04 1.21 5.49 -17.51 -0.10 1.12 16 22 N -0.83 -24.40 13.67 55.48 0.76 -23.64 16 23 Si 0.94 20.04 29.55 -169.99 -5.02 15.01 16 24 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 25 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 26 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 27 H 0.06 0.37 6.43 -51.93 -0.33 0.03 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.37 6.43 -51.93 -0.33 0.04 16 30 H 0.07 0.68 8.10 -51.93 -0.42 0.26 16 31 H 0.07 0.68 8.10 -51.93 -0.42 0.26 16 32 H 0.07 0.57 7.29 -51.93 -0.38 0.19 16 33 H 0.07 0.49 6.43 -51.93 -0.33 0.15 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.49 6.43 -51.93 -0.33 0.15 16 37 H 0.07 0.57 7.28 -51.93 -0.38 0.19 16 38 H 0.10 1.47 7.37 -51.93 -0.38 1.08 16 39 H 0.10 1.46 7.37 -51.93 -0.38 1.07 16 40 H 0.13 2.19 7.61 -52.49 -0.40 1.79 16 41 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 42 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 43 H 0.13 2.78 5.64 -52.49 -0.30 2.49 16 44 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 366.46 15.07 5.52 5.52 Total: -1.00 -33.99 366.46 -7.08 -41.07 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -5.92 Total: 3.70 kcal Atomic # 6 Polarization: -9.03 SS G_CDS: -1.21 Total: -10.24 kcal Atomic # 7 Polarization: -24.40 SS G_CDS: 0.76 Total: -23.64 kcal Atomic # 8 Polarization: -30.21 SS G_CDS: -1.21 Total: -31.42 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.99 -7.08 -41.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000811101952.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.026 kcal (2) G-P(sol) polarization free energy of solvation -33.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds