Wall clock time and date at job start Tue Mar 31 2020 13:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47183 * 2 1 4 4 N 1.46496 * 109.47248 * 180.02562 * 3 2 1 5 5 N 1.40451 * 126.82139 * 270.16945 * 4 3 2 6 6 C 1.30713 * 106.78992 * 180.25921 * 5 4 3 7 7 N 1.33242 * 108.94564 * 359.74915 * 6 5 4 8 8 C 1.30826 * 109.82984 * 0.02562 * 7 6 5 9 9 C 1.50702 * 125.95925 * 179.97438 * 8 7 6 10 10 N 1.46500 * 109.47011 * 90.02553 * 9 8 7 11 11 C 1.39924 * 119.99992 * 180.02562 * 10 9 8 12 12 C 1.38717 * 120.07982 * 359.97438 * 11 10 9 13 13 C 1.38217 * 120.01563 * 180.23432 * 12 11 10 14 14 C 1.38532 * 120.17238 * 359.48838 * 13 12 11 15 15 F 1.35106 * 119.91912 * 180.28080 * 14 13 12 16 16 C 1.38352 * 120.16107 * 0.51612 * 14 13 12 17 17 C 1.38721 * 119.98543 * 359.74175 * 16 14 13 18 18 O 1.35792 * 120.09200 * 180.02562 * 17 16 14 19 19 C 1.34799 * 116.99817 * 354.40328 * 18 17 16 20 20 H 1.08000 * 120.00050 * 5.05775 * 19 18 17 21 21 C 1.38630 * 120.00053 * 185.05963 * 19 18 17 22 22 N 1.31573 * 120.00403 * 179.97438 * 21 19 18 23 23 Si 1.86803 * 119.99868 * 0.02562 * 21 19 18 24 24 H 1.48499 * 109.47203 * 89.99714 * 23 21 19 25 25 H 1.48493 * 109.47200 * 209.99690 * 23 21 19 26 26 H 1.48503 * 109.47190 * 329.99751 * 23 21 19 27 27 H 1.08995 * 109.46996 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47684 * 300.00484 * 1 2 3 29 29 H 1.09008 * 109.47067 * 60.00305 * 1 2 3 30 30 H 1.08998 * 109.47006 * 239.99836 * 2 1 3 31 31 H 1.08998 * 109.47086 * 119.99791 * 2 1 3 32 32 H 1.09003 * 109.47002 * 59.99659 * 3 2 1 33 33 H 1.09008 * 109.46869 * 299.99816 * 3 2 1 34 34 H 1.07998 * 125.52329 * 179.71933 * 6 5 4 35 35 H 1.09005 * 109.47144 * 330.03005 * 9 8 7 36 36 H 1.09000 * 109.47216 * 210.02630 * 9 8 7 37 37 H 0.97001 * 119.99980 * 0.02562 * 10 9 8 38 38 H 1.07991 * 119.99390 * 359.96294 * 12 11 10 39 39 H 1.07994 * 119.91345 * 179.74909 * 13 12 11 40 40 H 1.08002 * 120.01074 * 179.76158 * 16 14 13 41 41 H 0.97000 * 120.00137 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 7 4.3472 1.4390 1.1233 6 6 5.5751 1.4461 0.6751 7 7 5.5493 1.4482 -0.6571 8 6 4.3103 1.4432 -1.0770 9 6 3.8636 1.4440 -2.5163 10 7 3.7250 0.0631 -2.9854 11 6 3.3190 -0.1918 -4.2999 12 6 3.0468 0.8619 -5.1602 13 6 2.6411 0.6085 -6.4570 14 6 2.5153 -0.6963 -6.9049 15 9 2.1238 -0.9380 -8.1752 16 6 2.7848 -1.7527 -6.0530 17 6 3.1873 -1.5061 -4.7486 18 8 3.4529 -2.5412 -3.9108 19 6 3.1954 -3.7820 -4.3704 20 1 2.8736 -3.9237 -5.3916 21 6 3.3435 -4.8763 -3.5323 22 7 3.0917 -6.0873 -3.9806 23 14 3.8994 -4.6312 -1.7658 24 1 2.7117 -4.4388 -0.8953 25 1 4.6553 -5.8269 -1.3143 26 1 4.7729 -3.4331 -1.6833 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6767 1.9563 -0.8901 34 1 6.4659 1.4501 1.2856 35 1 4.6038 1.9623 -3.1261 36 1 2.9037 1.9538 -2.5985 37 1 3.9147 -0.6745 -2.3847 38 1 3.1476 1.8802 -4.8153 39 1 2.4257 1.4300 -7.1241 40 1 2.6822 -2.7690 -6.4036 41 1 3.1957 -6.8530 -3.3943 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000811750002.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:23 Heat of formation + Delta-G solvation = 45.456874 kcal Electronic energy + Delta-G solvation = -26885.568288 eV Core-core repulsion = 22910.881688 eV Total energy + Delta-G solvation = -3974.686600 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.139 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -48.16523 -42.28953 -39.45819 -36.98689 -36.01486 -35.10776 -32.48242 -32.19293 -31.71642 -29.56936 -28.72316 -26.88730 -25.72751 -25.39500 -22.64097 -22.06585 -21.68220 -21.37665 -20.27882 -18.24375 -17.98485 -17.29961 -16.49732 -16.21223 -15.61790 -15.53122 -15.35249 -14.99657 -14.71763 -14.46271 -14.24343 -14.08255 -13.94879 -13.61200 -13.58039 -13.22818 -12.93857 -12.81017 -12.40901 -12.37310 -12.21844 -11.86288 -11.68138 -11.64706 -11.42689 -11.01407 -10.89160 -10.68483 -10.42923 -10.13256 -9.87183 -9.77390 -9.61812 -9.53528 -8.96817 -7.94975 -6.74974 -6.49850 -4.14648 1.34667 1.92446 2.02709 2.09523 2.74531 3.12092 3.16413 3.28678 3.70034 3.96114 4.12808 4.22920 4.27818 4.52388 4.57614 4.61482 4.76187 4.89791 4.98677 5.06166 5.09005 5.16261 5.31642 5.39825 5.46091 5.46439 5.66050 5.81842 5.88641 5.90790 6.01412 6.11149 6.15285 6.28869 6.36551 6.59212 6.62637 6.85931 6.91226 7.34187 7.50997 7.74225 7.91645 7.95087 8.00481 8.84386 9.42426 10.57726 Molecular weight = 320.14amu Principal moments of inertia in cm(-1) A = 0.009026 B = 0.005321 C = 0.004059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3101.357831 B = 5261.238794 C = 6895.775166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.145 4.145 3 C 0.127 3.873 4 N -0.365 5.365 5 N -0.317 5.317 6 C 0.196 3.804 7 N -0.528 5.528 8 C 0.267 3.733 9 C 0.214 3.786 10 N -0.743 5.743 11 C 0.149 3.851 12 C -0.139 4.139 13 C -0.190 4.190 14 C 0.092 3.908 15 F -0.154 7.154 16 C -0.226 4.226 17 C 0.132 3.868 18 O -0.215 6.215 19 C -0.385 4.385 20 H 0.108 0.892 21 C 0.066 3.934 22 N -0.875 5.875 23 Si 0.901 3.099 24 H -0.274 1.274 25 H -0.281 1.281 26 H -0.261 1.261 27 H 0.065 0.935 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.098 0.902 33 H 0.100 0.900 34 H 0.218 0.782 35 H 0.093 0.907 36 H 0.076 0.924 37 H 0.406 0.594 38 H 0.123 0.877 39 H 0.121 0.879 40 H 0.145 0.855 41 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.464 16.212 6.726 17.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.183 4.183 3 C 0.005 3.995 4 N -0.156 5.156 5 N -0.145 5.145 6 C -0.107 4.107 7 N -0.255 5.255 8 C -0.011 4.011 9 C 0.087 3.913 10 N -0.380 5.380 11 C 0.050 3.950 12 C -0.163 4.163 13 C -0.210 4.210 14 C 0.072 3.928 15 F -0.133 7.133 16 C -0.247 4.247 17 C 0.077 3.923 18 O -0.120 6.120 19 C -0.460 4.460 20 H 0.125 0.875 21 C -0.138 4.138 22 N -0.512 5.512 23 Si 0.727 3.273 24 H -0.200 1.200 25 H -0.206 1.206 26 H -0.185 1.185 27 H 0.084 0.916 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.097 0.903 31 H 0.089 0.911 32 H 0.116 0.884 33 H 0.118 0.882 34 H 0.234 0.766 35 H 0.111 0.889 36 H 0.094 0.906 37 H 0.242 0.758 38 H 0.141 0.859 39 H 0.139 0.861 40 H 0.163 0.837 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.370 16.133 7.552 17.970 hybrid contribution 0.145 -0.570 0.619 0.853 sum -2.225 15.564 8.171 17.718 Atomic orbital electron populations 1.21663 0.93812 1.03010 1.01967 1.21966 0.97286 0.94932 1.04141 1.21986 0.73284 0.99453 1.04764 1.50495 1.07922 1.53435 1.03784 1.78039 1.02115 1.26011 1.08359 1.25989 0.95824 0.98458 0.90388 1.70509 1.19473 1.23960 1.11569 1.24271 0.86424 0.97772 0.92584 1.19502 1.00960 0.86699 0.84151 1.44066 1.78096 1.04931 1.10938 1.16966 1.02525 0.90458 0.85096 1.19937 1.06700 0.96596 0.93040 1.20359 1.09337 0.94486 0.96844 1.17269 1.02879 0.93574 0.79124 1.91407 1.89028 1.95429 1.37386 1.20935 1.10246 0.99896 0.93653 1.18261 0.97873 0.86603 0.89519 1.83491 1.74618 1.14181 1.39725 1.20717 1.46722 0.78642 0.99951 0.87491 1.24416 0.96141 0.93688 0.99535 1.69642 1.46348 0.97963 1.37280 0.86257 0.79398 0.78554 0.83104 1.19971 1.20638 1.18537 0.91558 0.92521 0.92031 0.90313 0.91051 0.88383 0.88223 0.76567 0.88884 0.90577 0.75803 0.85866 0.86142 0.83708 0.90950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.91 37.16 0.37 -0.95 16 2 C -0.14 -1.58 6.26 -26.73 -0.17 -1.75 16 3 C 0.13 1.20 6.30 -4.04 -0.03 1.18 16 4 N -0.37 -4.58 3.64 -58.34 -0.21 -4.79 16 5 N -0.32 -4.34 12.70 29.29 0.37 -3.97 16 6 C 0.20 2.53 13.03 -91.81 -1.20 1.33 16 7 N -0.53 -7.72 11.19 -11.97 -0.13 -7.86 16 8 C 0.27 3.55 7.35 -155.70 -1.14 2.40 16 9 C 0.21 2.54 5.24 -5.19 -0.03 2.52 16 10 N -0.74 -11.57 5.72 -59.63 -0.34 -11.92 16 11 C 0.15 2.60 6.67 -83.52 -0.56 2.04 16 12 C -0.14 -2.07 9.31 -39.41 -0.37 -2.44 16 13 C -0.19 -3.01 10.02 -39.48 -0.40 -3.41 16 14 C 0.09 1.73 7.29 -39.43 -0.29 1.44 16 15 F -0.15 -2.88 17.26 2.25 0.04 -2.84 16 16 C -0.23 -4.77 9.14 -39.36 -0.36 -5.13 16 17 C 0.13 2.80 6.67 -38.93 -0.26 2.54 16 18 O -0.21 -5.22 7.83 0.01 0.00 -5.22 16 19 C -0.38 -10.35 9.94 30.88 0.31 -10.05 16 20 H 0.11 2.98 5.44 -52.49 -0.29 2.70 16 21 C 0.07 1.79 5.49 -17.52 -0.10 1.69 16 22 N -0.87 -24.68 13.96 55.48 0.77 -23.90 16 23 Si 0.90 21.05 28.62 -169.99 -4.86 16.18 16 24 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 26 H -0.26 -6.12 7.11 56.52 0.40 -5.72 16 27 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.51 8.14 -51.92 -0.42 0.08 16 30 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.10 0.73 7.10 -51.92 -0.37 0.37 16 34 H 0.22 1.94 8.06 -52.49 -0.42 1.51 16 35 H 0.09 1.04 7.95 -51.93 -0.41 0.63 16 36 H 0.08 0.70 6.93 -51.93 -0.36 0.34 16 37 H 0.41 7.24 7.83 -40.82 -0.32 6.92 16 38 H 0.12 1.40 6.73 -52.49 -0.35 1.05 16 39 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 40 H 0.15 3.28 5.64 -52.49 -0.30 2.98 16 41 H 0.28 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 355.77 15.07 5.36 5.36 Total: -1.00 -30.57 355.77 -8.13 -38.70 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: -4.91 Total: 8.80 kcal Atomic # 6 Polarization: -4.35 SS G_CDS: -4.21 Total: -8.56 kcal Atomic # 7 Polarization: -52.89 SS G_CDS: 0.46 Total: -52.43 kcal Atomic # 8 Polarization: -5.22 SS G_CDS: 0.00 Total: -5.22 kcal Atomic # 9 Polarization: -2.88 SS G_CDS: 0.04 Total: -2.84 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.86 Total: 16.18 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.57 -8.13 -38.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000811750002.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.156 kcal (2) G-P(sol) polarization free energy of solvation -30.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds