Wall clock time and date at job start Tue Mar 31 2020 13:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47183 * 2 1 4 4 N 1.46496 * 109.47248 * 180.02562 * 3 2 1 5 5 N 1.40451 * 126.82139 * 270.16945 * 4 3 2 6 6 C 1.30713 * 106.78992 * 180.25921 * 5 4 3 7 7 N 1.33242 * 108.94564 * 359.74915 * 6 5 4 8 8 C 1.30826 * 109.82984 * 0.02562 * 7 6 5 9 9 C 1.50702 * 125.95925 * 179.97438 * 8 7 6 10 10 N 1.46500 * 109.47011 * 90.02553 * 9 8 7 11 11 C 1.39924 * 119.99992 * 180.02562 * 10 9 8 12 12 C 1.38717 * 120.07982 * 359.97438 * 11 10 9 13 13 C 1.38217 * 120.01563 * 180.23432 * 12 11 10 14 14 C 1.38532 * 120.17238 * 359.48838 * 13 12 11 15 15 F 1.35106 * 119.91912 * 180.28080 * 14 13 12 16 16 C 1.38352 * 120.16107 * 0.51612 * 14 13 12 17 17 C 1.38721 * 119.98543 * 359.74175 * 16 14 13 18 18 O 1.35792 * 120.09200 * 180.02562 * 17 16 14 19 19 C 1.34799 * 116.99817 * 354.40328 * 18 17 16 20 20 H 1.08000 * 120.00050 * 5.05775 * 19 18 17 21 21 C 1.38630 * 120.00053 * 185.05963 * 19 18 17 22 22 N 1.31573 * 120.00403 * 179.97438 * 21 19 18 23 23 Si 1.86803 * 119.99868 * 0.02562 * 21 19 18 24 24 H 1.48499 * 109.47203 * 89.99714 * 23 21 19 25 25 H 1.48493 * 109.47200 * 209.99690 * 23 21 19 26 26 H 1.48503 * 109.47190 * 329.99751 * 23 21 19 27 27 H 1.08995 * 109.46996 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47684 * 300.00484 * 1 2 3 29 29 H 1.09008 * 109.47067 * 60.00305 * 1 2 3 30 30 H 1.08998 * 109.47006 * 239.99836 * 2 1 3 31 31 H 1.08998 * 109.47086 * 119.99791 * 2 1 3 32 32 H 1.09003 * 109.47002 * 59.99659 * 3 2 1 33 33 H 1.09008 * 109.46869 * 299.99816 * 3 2 1 34 34 H 1.07998 * 125.52329 * 179.71933 * 6 5 4 35 35 H 1.09005 * 109.47144 * 330.03005 * 9 8 7 36 36 H 1.09000 * 109.47216 * 210.02630 * 9 8 7 37 37 H 0.97001 * 119.99980 * 0.02562 * 10 9 8 38 38 H 1.07991 * 119.99390 * 359.96294 * 12 11 10 39 39 H 1.07994 * 119.91345 * 179.74909 * 13 12 11 40 40 H 1.08002 * 120.01074 * 179.76158 * 16 14 13 41 41 H 0.97000 * 120.00137 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 7 4.3472 1.4390 1.1233 6 6 5.5751 1.4461 0.6751 7 7 5.5493 1.4482 -0.6571 8 6 4.3103 1.4432 -1.0770 9 6 3.8636 1.4440 -2.5163 10 7 3.7250 0.0631 -2.9854 11 6 3.3190 -0.1918 -4.2999 12 6 3.0468 0.8619 -5.1602 13 6 2.6411 0.6085 -6.4570 14 6 2.5153 -0.6963 -6.9049 15 9 2.1238 -0.9380 -8.1752 16 6 2.7848 -1.7527 -6.0530 17 6 3.1873 -1.5061 -4.7486 18 8 3.4529 -2.5412 -3.9108 19 6 3.1954 -3.7820 -4.3704 20 1 2.8736 -3.9237 -5.3916 21 6 3.3435 -4.8763 -3.5323 22 7 3.0917 -6.0873 -3.9806 23 14 3.8994 -4.6312 -1.7658 24 1 2.7117 -4.4388 -0.8953 25 1 4.6553 -5.8269 -1.3143 26 1 4.7729 -3.4331 -1.6833 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6767 1.9563 -0.8901 34 1 6.4659 1.4501 1.2856 35 1 4.6038 1.9623 -3.1261 36 1 2.9037 1.9538 -2.5985 37 1 3.9147 -0.6745 -2.3847 38 1 3.1476 1.8802 -4.8153 39 1 2.4257 1.4300 -7.1241 40 1 2.6822 -2.7690 -6.4036 41 1 3.1957 -6.8530 -3.3943 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000811750002.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:22 Heat of formation + Delta-G solvation = 27.442002 kcal Electronic energy + Delta-G solvation = -26886.349471 eV Core-core repulsion = 22910.881688 eV Total energy + Delta-G solvation = -3975.467784 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.139 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.64086 -43.23696 -41.01023 -38.51859 -36.92815 -36.30273 -34.46360 -33.07353 -32.81152 -31.07972 -29.98324 -27.80372 -27.25254 -26.80015 -23.62331 -23.40564 -22.81625 -22.63292 -21.27745 -20.03156 -19.52719 -18.40141 -17.75161 -17.48225 -17.10059 -16.58850 -16.52376 -16.39033 -15.88398 -15.78164 -15.67918 -15.44394 -15.28869 -15.03406 -14.80608 -14.40066 -14.33401 -14.01196 -13.68570 -13.56176 -13.29087 -13.17557 -13.03673 -12.72217 -12.48358 -12.45357 -12.24356 -12.14126 -11.81592 -11.57447 -11.12872 -10.94182 -10.85885 -10.83644 -10.68788 -9.49289 -8.51970 -8.15429 -6.19972 0.37461 0.45924 0.57348 1.24602 1.24928 1.27043 1.42364 1.75294 2.20358 2.57405 2.71414 2.91953 3.00878 3.06565 3.45283 3.60366 3.69999 3.80451 3.93155 3.98944 4.16615 4.26874 4.28284 4.39383 4.45889 4.50603 4.62414 4.64280 4.71764 5.00856 5.03816 5.08136 5.19919 5.22793 5.29627 5.35072 5.37993 5.43700 5.58581 5.71002 5.86107 6.01705 6.39948 6.56357 6.82707 6.99474 7.55305 8.60260 Molecular weight = 320.14amu Principal moments of inertia in cm(-1) A = 0.009026 B = 0.005321 C = 0.004059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3101.357831 B = 5261.238794 C = 6895.775166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.141 4.141 3 C 0.124 3.876 4 N -0.364 5.364 5 N -0.338 5.338 6 C 0.191 3.809 7 N -0.557 5.557 8 C 0.260 3.740 9 C 0.211 3.789 10 N -0.743 5.743 11 C 0.165 3.835 12 C -0.123 4.123 13 C -0.152 4.152 14 C 0.065 3.935 15 F -0.157 7.157 16 C -0.237 4.237 17 C 0.090 3.910 18 O -0.236 6.236 19 C -0.387 4.387 20 H 0.078 0.922 21 C 0.014 3.986 22 N -0.923 5.923 23 Si 0.965 3.035 24 H -0.267 1.267 25 H -0.273 1.273 26 H -0.265 1.265 27 H 0.050 0.950 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.050 0.950 31 H 0.051 0.949 32 H 0.115 0.885 33 H 0.129 0.871 34 H 0.245 0.755 35 H 0.110 0.890 36 H 0.116 0.884 37 H 0.394 0.606 38 H 0.178 0.822 39 H 0.163 0.837 40 H 0.111 0.889 41 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.810 20.792 7.521 22.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.180 4.180 3 C 0.003 3.997 4 N -0.155 5.155 5 N -0.166 5.166 6 C -0.112 4.112 7 N -0.285 5.285 8 C -0.017 4.017 9 C 0.086 3.914 10 N -0.377 5.377 11 C 0.064 3.936 12 C -0.145 4.145 13 C -0.172 4.172 14 C 0.044 3.956 15 F -0.136 7.136 16 C -0.259 4.259 17 C 0.038 3.962 18 O -0.144 6.144 19 C -0.464 4.464 20 H 0.096 0.904 21 C -0.184 4.184 22 N -0.564 5.564 23 Si 0.788 3.212 24 H -0.192 1.192 25 H -0.198 1.198 26 H -0.189 1.189 27 H 0.069 0.931 28 H 0.095 0.905 29 H 0.092 0.908 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.133 0.867 33 H 0.147 0.853 34 H 0.261 0.739 35 H 0.128 0.872 36 H 0.133 0.867 37 H 0.227 0.773 38 H 0.195 0.805 39 H 0.181 0.819 40 H 0.129 0.871 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.733 20.783 8.341 22.561 hybrid contribution 0.209 -1.689 0.234 1.718 sum -2.524 19.095 8.576 21.084 Atomic orbital electron populations 1.21643 0.92273 1.02562 1.03564 1.21892 0.98587 0.95684 1.01811 1.22257 0.71754 0.98577 1.07095 1.50681 1.08800 1.52742 1.03320 1.77995 1.02642 1.26651 1.09335 1.26600 0.96635 0.97639 0.90278 1.70498 1.20565 1.24938 1.12505 1.24482 0.86389 0.97626 0.93246 1.19869 1.03455 0.84597 0.83488 1.44227 1.77177 1.06395 1.09915 1.17159 1.00919 0.89300 0.86269 1.20516 1.04076 0.98115 0.91842 1.20903 1.04908 0.93844 0.97535 1.17446 1.04824 0.94347 0.78980 1.91395 1.89215 1.95588 1.37436 1.20898 1.10922 0.99404 0.94637 1.18749 1.00245 0.87630 0.89574 1.83440 1.77134 1.13495 1.40338 1.20587 1.46453 0.80408 0.98929 0.90440 1.25131 0.96667 0.93364 1.03268 1.69734 1.49161 0.98758 1.38785 0.85303 0.79043 0.78247 0.78612 1.19159 1.19823 1.18930 0.93086 0.90515 0.90806 0.93073 0.92992 0.86667 0.85284 0.73869 0.87219 0.86653 0.77318 0.80504 0.81945 0.87086 0.90707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 9.91 71.98 0.71 -1.55 16 2 C -0.14 -2.86 6.26 30.60 0.19 -2.67 16 3 C 0.12 1.94 6.30 86.38 0.54 2.48 16 4 N -0.36 -8.17 3.64 -338.49 -1.23 -9.40 16 5 N -0.34 -8.61 12.70 -61.25 -0.78 -9.38 16 6 C 0.19 4.57 13.03 180.76 2.36 6.93 16 7 N -0.56 -15.10 11.19 -191.78 -2.15 -17.25 16 8 C 0.26 6.15 7.35 138.23 1.02 7.17 16 9 C 0.21 4.06 5.24 85.63 0.45 4.51 16 10 N -0.74 -21.20 5.72 -342.56 -1.96 -23.16 16 11 C 0.17 5.32 6.67 38.27 0.26 5.58 16 12 C -0.12 -2.96 9.31 22.38 0.21 -2.75 16 13 C -0.15 -4.09 10.02 22.34 0.22 -3.86 16 14 C 0.06 2.36 7.29 22.37 0.16 2.52 16 15 F -0.16 -5.79 17.26 44.97 0.78 -5.02 16 16 C -0.24 -10.40 9.14 22.41 0.20 -10.19 16 17 C 0.09 3.87 6.67 22.69 0.15 4.02 16 18 O -0.24 -11.99 7.83 -22.89 -0.18 -12.17 16 19 C -0.39 -22.25 9.94 67.91 0.68 -21.58 16 20 H 0.08 4.76 5.44 -2.91 -0.02 4.75 16 21 C 0.01 0.80 5.49 84.83 0.47 1.27 16 22 N -0.92 -55.08 13.96 21.61 0.30 -54.78 16 23 Si 0.96 45.27 28.62 68.60 1.96 47.23 16 24 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 25 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 26 H -0.26 -12.39 7.11 99.48 0.71 -11.68 16 27 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 30 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.13 1.25 7.10 -2.38 -0.02 1.23 16 34 H 0.25 3.89 8.06 -2.91 -0.02 3.87 16 35 H 0.11 1.83 7.95 -2.38 -0.02 1.81 16 36 H 0.12 1.36 6.93 -2.39 -0.02 1.34 16 37 H 0.39 13.66 7.83 -92.71 -0.73 12.94 16 38 H 0.18 2.51 6.73 -2.92 -0.02 2.49 16 39 H 0.16 3.15 8.06 -2.91 -0.02 3.12 16 40 H 0.11 5.54 5.64 -2.91 -0.02 5.53 16 41 H 0.28 15.59 8.31 -92.71 -0.77 14.82 16 Total: -1.00 -72.66 355.77 4.72 -67.94 By element: Atomic # 1 Polarization: 23.75 SS G_CDS: 0.36 Total: 24.11 kcal Atomic # 6 Polarization: -15.75 SS G_CDS: 7.62 Total: -8.13 kcal Atomic # 7 Polarization: -108.15 SS G_CDS: -5.81 Total: -113.96 kcal Atomic # 8 Polarization: -11.99 SS G_CDS: -0.18 Total: -12.17 kcal Atomic # 9 Polarization: -5.79 SS G_CDS: 0.78 Total: -5.02 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 1.96 Total: 47.23 kcal Total: -72.66 4.72 -67.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000811750002.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.385 kcal (2) G-P(sol) polarization free energy of solvation -72.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds