Wall clock time and date at job start Tue Mar 31 2020 13:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47198 * 2 1 4 4 H 1.09003 * 109.46818 * 54.99679 * 3 2 1 5 5 O 1.45198 * 109.46946 * 295.00234 * 3 2 1 6 6 C 1.34230 * 117.00173 * 89.99709 * 5 3 2 7 7 O 1.20822 * 120.00010 * 359.97438 * 6 5 3 8 8 C 1.50706 * 119.99763 * 180.02562 * 6 5 3 9 9 C 1.53002 * 109.46925 * 180.02562 * 8 6 5 10 10 C 1.50696 * 109.47300 * 180.02562 * 9 8 6 11 11 H 1.07999 * 119.99822 * 0.02562 * 10 9 8 12 12 C 1.37876 * 120.00339 * 179.97438 * 10 9 8 13 13 N 1.31514 * 120.00355 * 179.97438 * 12 10 9 14 14 Si 1.86803 * 119.99771 * 0.02562 * 12 10 9 15 15 H 1.48498 * 109.47174 * 89.99890 * 14 12 10 16 16 H 1.48506 * 109.46994 * 210.00195 * 14 12 10 17 17 H 1.48504 * 109.46913 * 329.99640 * 14 12 10 18 18 C 1.50693 * 109.47132 * 175.00188 * 3 2 1 19 19 O 1.21300 * 120.00183 * 105.00236 * 18 3 2 20 20 C 1.46867 * 119.99999 * 284.99485 * 18 3 2 21 21 C 1.40040 * 120.11018 * 359.73347 * 20 18 3 22 22 C 1.37114 * 119.87903 * 179.74014 * 21 20 18 23 23 C 1.39080 * 120.11646 * 0.52713 * 22 21 20 24 24 O 1.35664 * 119.88845 * 179.74335 * 23 22 21 25 25 C 1.42902 * 116.99856 * 359.97438 * 24 23 22 26 26 C 1.39080 * 120.23033 * 359.72355 * 23 22 21 27 27 C 1.37118 * 120.11379 * 0.02562 * 26 23 22 28 28 H 1.08997 * 109.47098 * 299.99854 * 1 2 3 29 29 H 1.08995 * 109.47263 * 60.00199 * 1 2 3 30 30 H 1.09009 * 109.47220 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47098 * 240.00146 * 2 1 3 32 32 H 1.09005 * 109.47254 * 119.99799 * 2 1 3 33 33 H 1.09000 * 109.47318 * 299.99486 * 8 6 5 34 34 H 1.09000 * 109.47161 * 60.00117 * 8 6 5 35 35 H 1.09004 * 109.46930 * 299.99901 * 9 8 6 36 36 H 1.09004 * 109.47059 * 59.99503 * 9 8 6 37 37 H 0.96991 * 119.99891 * 179.97438 * 13 12 10 38 38 H 1.07994 * 120.05883 * 359.97168 * 21 20 18 39 39 H 1.07998 * 119.94574 * 180.25421 * 22 21 20 40 40 H 1.09003 * 109.47216 * 300.00120 * 25 24 23 41 41 H 1.09005 * 109.47261 * 59.99744 * 25 24 23 42 42 H 1.08994 * 109.47318 * 180.02562 * 25 24 23 43 43 H 1.08003 * 119.94284 * 179.97438 * 26 23 22 44 44 H 1.08001 * 120.05870 * 179.97438 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 8 1.6558 2.0917 -1.2407 6 6 0.4726 2.7254 -1.2559 7 8 -0.2193 2.7369 -0.2656 8 6 0.0069 3.4215 -2.5088 9 6 -1.3613 4.0593 -2.2592 10 6 -1.8274 4.7549 -3.5121 11 1 -1.2098 4.7429 -4.3980 12 6 -3.0428 5.4058 -3.5279 13 7 -3.4493 6.0133 -4.6212 14 14 -4.1113 5.4260 -1.9958 15 1 -3.7684 6.6106 -1.1686 16 1 -5.5413 5.4949 -2.3905 17 1 -3.8739 4.1882 -1.2104 18 6 3.5418 1.4443 0.1238 19 8 4.2300 1.6874 -0.8451 20 6 4.1724 1.1519 1.4176 21 6 3.3801 0.8766 2.5390 22 6 3.9738 0.5990 3.7433 23 6 5.3601 0.6013 3.8549 24 8 5.9426 0.3311 5.0500 25 6 5.0714 0.0543 6.1484 26 6 6.1514 0.8792 2.7455 27 6 5.5678 1.1531 1.5353 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 0.7237 4.1958 -2.7822 34 1 -0.0721 2.6969 -3.3192 35 1 -2.0784 3.2854 -1.9855 36 1 -1.2819 4.7841 -1.4488 37 1 -4.3045 6.4708 -4.6323 38 1 2.3034 0.8793 2.4545 39 1 3.3639 0.3825 4.6079 40 1 4.4252 0.9141 6.3253 41 1 4.4602 -0.8180 5.9166 42 1 5.6643 -0.1439 7.0413 43 1 7.2275 0.8801 2.8375 44 1 6.1831 1.3691 0.6745 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812617972.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:03:05 Heat of formation + Delta-G solvation = -143.352307 kcal Electronic energy + Delta-G solvation = -26306.659121 eV Core-core repulsion = 22382.659944 eV Total energy + Delta-G solvation = -3923.999178 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.05328 -40.43267 -39.30694 -37.46737 -36.37636 -33.97509 -33.55643 -31.79663 -31.38308 -30.94117 -28.60489 -27.58512 -26.27023 -23.94187 -22.95499 -22.50095 -21.51852 -20.06033 -19.83878 -18.78941 -17.81141 -17.16815 -16.79234 -16.53254 -16.33693 -16.29229 -15.71509 -15.22024 -14.71553 -14.65154 -14.26406 -14.14343 -14.06142 -13.83938 -13.41319 -13.23579 -13.02000 -12.76311 -12.60851 -12.46025 -12.21090 -12.10623 -12.00172 -11.59295 -11.47548 -11.33251 -11.08366 -11.01367 -10.56418 -10.28386 -10.18077 -9.99888 -9.80320 -9.60926 -9.60485 -9.25947 -8.74976 -8.56011 -6.07119 -4.07006 0.29492 0.87528 2.04526 2.62831 2.66595 2.73668 3.33017 3.33359 3.40262 3.48483 3.79806 4.17733 4.33138 4.45482 4.52053 4.61433 4.62397 4.68105 4.77221 4.79720 4.91273 4.95257 5.00460 5.13257 5.27345 5.31640 5.42702 5.49087 5.57700 5.64013 5.75332 5.79487 5.92944 5.94048 6.00261 6.04442 6.14823 6.26332 6.46340 6.74198 6.77731 7.22297 7.26611 7.30129 7.70394 8.15975 8.47193 8.95697 9.54337 11.05522 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.022132 B = 0.002449 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.823294 B =11429.132511 C =11882.590548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.133 4.133 3 C 0.042 3.958 4 H 0.110 0.890 5 O -0.338 6.338 6 C 0.457 3.543 7 O -0.506 6.506 8 C -0.096 4.096 9 C 0.000 4.000 10 C -0.527 4.527 11 H 0.076 0.924 12 C 0.070 3.930 13 N -0.900 5.900 14 Si 0.877 3.123 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.262 1.262 18 C 0.402 3.598 19 O -0.428 6.428 20 C -0.203 4.203 21 C -0.031 4.031 22 C -0.220 4.220 23 C 0.160 3.840 24 O -0.313 6.313 25 C 0.023 3.977 26 C -0.164 4.164 27 C -0.017 4.017 28 H 0.065 0.935 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.026 0.974 36 H 0.021 0.979 37 H 0.264 0.736 38 H 0.138 0.862 39 H 0.137 0.863 40 H 0.060 0.940 41 H 0.059 0.941 42 H 0.103 0.897 43 H 0.139 0.861 44 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.947 -15.533 21.006 31.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.170 4.170 3 C -0.014 4.014 4 H 0.128 0.872 5 O -0.256 6.256 6 C 0.302 3.698 7 O -0.394 6.394 8 C -0.133 4.133 9 C -0.038 4.038 10 C -0.565 4.565 11 H 0.094 0.906 12 C -0.131 4.131 13 N -0.538 5.538 14 Si 0.704 3.296 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.186 1.186 18 C 0.277 3.723 19 O -0.300 6.300 20 C -0.204 4.204 21 C -0.050 4.050 22 C -0.239 4.239 23 C 0.114 3.886 24 O -0.225 6.225 25 C -0.071 4.071 26 C -0.183 4.183 27 C -0.035 4.035 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.097 0.903 32 H 0.101 0.899 33 H 0.118 0.882 34 H 0.118 0.882 35 H 0.044 0.956 36 H 0.039 0.961 37 H 0.074 0.926 38 H 0.155 0.845 39 H 0.154 0.846 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.121 0.879 43 H 0.157 0.843 44 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 18.170 -15.318 20.785 31.573 hybrid contribution -1.015 0.061 1.092 1.492 sum 17.155 -15.257 21.878 31.713 Atomic orbital electron populations 1.21847 0.93594 1.01844 1.03561 1.21909 0.98050 0.93327 1.03728 1.22987 0.93807 0.95699 0.88904 0.87204 1.86727 1.38599 1.63830 1.36423 1.24825 0.77908 0.75134 0.91961 1.90602 1.54665 1.57902 1.36194 1.21572 1.00884 0.99748 0.91132 1.19476 0.90114 0.96164 0.98018 1.21034 1.04542 1.33404 0.97498 0.90625 1.24960 0.97520 0.94609 0.96056 1.69902 1.21385 1.35124 1.27426 0.86799 0.79553 0.79432 0.83766 1.20196 1.21345 1.18595 1.22119 0.89612 0.73240 0.87308 1.90563 1.65741 1.34420 1.39316 1.20196 0.94489 1.10855 0.94879 1.21236 1.00291 0.92335 0.91099 1.21118 0.93464 1.09612 0.99699 1.19432 0.91468 0.92076 0.85629 1.86047 1.36347 1.83611 1.16489 1.23169 0.95334 1.00937 0.87707 1.20306 1.00573 1.06827 0.90575 1.21100 0.93451 0.91779 0.97155 0.91592 0.92164 0.92267 0.90280 0.89895 0.88230 0.88207 0.95588 0.96064 0.92603 0.84456 0.84561 0.92161 0.92192 0.87871 0.84304 0.83852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 8.56 37.16 0.32 -1.53 16 2 C -0.13 -1.46 5.40 -26.73 -0.14 -1.60 16 3 C 0.04 0.57 1.85 -27.88 -0.05 0.51 16 4 H 0.11 1.41 6.32 -51.93 -0.33 1.08 16 5 O -0.34 -5.68 9.40 -45.77 -0.43 -6.11 16 6 C 0.46 8.47 6.41 36.01 0.23 8.70 16 7 O -0.51 -10.03 13.12 -18.75 -0.25 -10.27 16 8 C -0.10 -1.90 5.75 -27.88 -0.16 -2.06 16 9 C 0.00 -0.01 3.33 -27.88 -0.09 -0.10 16 10 C -0.53 -14.89 9.66 -34.44 -0.33 -15.22 16 11 H 0.08 2.25 7.99 -52.49 -0.42 1.83 16 12 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 13 N -0.90 -27.64 13.96 55.43 0.77 -26.87 16 14 Si 0.88 22.04 27.47 -169.99 -4.67 17.37 16 15 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 16 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 17 H -0.26 -6.45 6.54 56.52 0.37 -6.08 16 18 C 0.40 5.22 6.41 -30.82 -0.20 5.02 16 19 O -0.43 -6.82 16.56 -13.63 -0.23 -7.04 16 20 C -0.20 -2.10 5.84 -105.06 -0.61 -2.71 16 21 C -0.03 -0.26 8.54 -39.31 -0.34 -0.60 16 22 C -0.22 -1.62 8.99 -39.68 -0.36 -1.97 16 23 C 0.16 1.30 6.70 -38.96 -0.26 1.04 16 24 O -0.31 -2.32 10.48 -18.69 -0.20 -2.52 16 25 C 0.02 0.09 9.81 101.05 0.99 1.08 16 26 C -0.16 -1.36 9.95 -39.68 -0.39 -1.75 16 27 C -0.02 -0.16 9.57 -39.32 -0.38 -0.53 16 28 H 0.07 0.82 7.80 -51.93 -0.40 0.42 16 29 H 0.06 0.90 6.06 -51.93 -0.31 0.59 16 30 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 31 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.08 0.68 6.69 -51.93 -0.35 0.34 16 33 H 0.10 1.88 8.14 -51.93 -0.42 1.46 16 34 H 0.10 1.85 8.14 -51.93 -0.42 1.43 16 35 H 0.03 0.64 7.16 -51.93 -0.37 0.27 16 36 H 0.02 0.52 7.53 -51.93 -0.39 0.13 16 37 H 0.26 7.59 8.31 -40.82 -0.34 7.26 16 38 H 0.14 0.97 6.02 -52.49 -0.32 0.65 16 39 H 0.14 0.68 6.27 -52.49 -0.33 0.35 16 40 H 0.06 0.19 7.65 -51.93 -0.40 -0.21 16 41 H 0.06 0.17 7.65 -51.93 -0.40 -0.22 16 42 H 0.10 0.21 8.14 -51.93 -0.42 -0.21 16 43 H 0.14 0.91 8.06 -52.48 -0.42 0.49 16 44 H 0.14 1.28 7.64 -52.49 -0.40 0.87 16 LS Contribution 365.83 15.07 5.51 5.51 Total: -1.00 -34.28 365.83 -7.48 -41.75 By element: Atomic # 1 Polarization: 4.08 SS G_CDS: -6.12 Total: -2.04 kcal Atomic # 6 Polarization: -7.90 SS G_CDS: -1.87 Total: -9.78 kcal Atomic # 7 Polarization: -27.64 SS G_CDS: 0.77 Total: -26.87 kcal Atomic # 8 Polarization: -24.85 SS G_CDS: -1.10 Total: -25.95 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.67 Total: 17.37 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.28 -7.48 -41.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812617972.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.598 kcal (2) G-P(sol) polarization free energy of solvation -34.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds