Wall clock time and date at job start Tue Mar 31 2020 13:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47198 * 2 1 4 4 H 1.09003 * 109.46818 * 54.99679 * 3 2 1 5 5 O 1.45198 * 109.46946 * 295.00234 * 3 2 1 6 6 C 1.34230 * 117.00173 * 89.99709 * 5 3 2 7 7 O 1.20822 * 120.00010 * 359.97438 * 6 5 3 8 8 C 1.50706 * 119.99763 * 180.02562 * 6 5 3 9 9 C 1.53002 * 109.46925 * 180.02562 * 8 6 5 10 10 C 1.50696 * 109.47300 * 180.02562 * 9 8 6 11 11 H 1.07999 * 119.99822 * 0.02562 * 10 9 8 12 12 C 1.37876 * 120.00339 * 179.97438 * 10 9 8 13 13 N 1.31514 * 120.00355 * 179.97438 * 12 10 9 14 14 Si 1.86803 * 119.99771 * 0.02562 * 12 10 9 15 15 H 1.48498 * 109.47174 * 89.99890 * 14 12 10 16 16 H 1.48506 * 109.46994 * 210.00195 * 14 12 10 17 17 H 1.48504 * 109.46913 * 329.99640 * 14 12 10 18 18 C 1.50693 * 109.47132 * 175.00188 * 3 2 1 19 19 O 1.21300 * 120.00183 * 105.00236 * 18 3 2 20 20 C 1.46867 * 119.99999 * 284.99485 * 18 3 2 21 21 C 1.40040 * 120.11018 * 359.73347 * 20 18 3 22 22 C 1.37114 * 119.87903 * 179.74014 * 21 20 18 23 23 C 1.39080 * 120.11646 * 0.52713 * 22 21 20 24 24 O 1.35664 * 119.88845 * 179.74335 * 23 22 21 25 25 C 1.42902 * 116.99856 * 359.97438 * 24 23 22 26 26 C 1.39080 * 120.23033 * 359.72355 * 23 22 21 27 27 C 1.37118 * 120.11379 * 0.02562 * 26 23 22 28 28 H 1.08997 * 109.47098 * 299.99854 * 1 2 3 29 29 H 1.08995 * 109.47263 * 60.00199 * 1 2 3 30 30 H 1.09009 * 109.47220 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47098 * 240.00146 * 2 1 3 32 32 H 1.09005 * 109.47254 * 119.99799 * 2 1 3 33 33 H 1.09000 * 109.47318 * 299.99486 * 8 6 5 34 34 H 1.09000 * 109.47161 * 60.00117 * 8 6 5 35 35 H 1.09004 * 109.46930 * 299.99901 * 9 8 6 36 36 H 1.09004 * 109.47059 * 59.99503 * 9 8 6 37 37 H 0.96991 * 119.99891 * 179.97438 * 13 12 10 38 38 H 1.07994 * 120.05883 * 359.97168 * 21 20 18 39 39 H 1.07998 * 119.94574 * 180.25421 * 22 21 20 40 40 H 1.09003 * 109.47216 * 300.00120 * 25 24 23 41 41 H 1.09005 * 109.47261 * 59.99744 * 25 24 23 42 42 H 1.08994 * 109.47318 * 180.02562 * 25 24 23 43 43 H 1.08003 * 119.94284 * 179.97438 * 26 23 22 44 44 H 1.08001 * 120.05870 * 179.97438 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 8 1.6558 2.0917 -1.2407 6 6 0.4726 2.7254 -1.2559 7 8 -0.2193 2.7369 -0.2656 8 6 0.0069 3.4215 -2.5088 9 6 -1.3613 4.0593 -2.2592 10 6 -1.8274 4.7549 -3.5121 11 1 -1.2098 4.7429 -4.3980 12 6 -3.0428 5.4058 -3.5279 13 7 -3.4493 6.0133 -4.6212 14 14 -4.1113 5.4260 -1.9958 15 1 -3.7684 6.6106 -1.1686 16 1 -5.5413 5.4949 -2.3905 17 1 -3.8739 4.1882 -1.2104 18 6 3.5418 1.4443 0.1238 19 8 4.2300 1.6874 -0.8451 20 6 4.1724 1.1519 1.4176 21 6 3.3801 0.8766 2.5390 22 6 3.9738 0.5990 3.7433 23 6 5.3601 0.6013 3.8549 24 8 5.9426 0.3311 5.0500 25 6 5.0714 0.0543 6.1484 26 6 6.1514 0.8792 2.7455 27 6 5.5678 1.1531 1.5353 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 0.7237 4.1958 -2.7822 34 1 -0.0721 2.6969 -3.3192 35 1 -2.0784 3.2854 -1.9855 36 1 -1.2819 4.7841 -1.4488 37 1 -4.3045 6.4708 -4.6323 38 1 2.3034 0.8793 2.4545 39 1 3.3639 0.3825 4.6079 40 1 4.4252 0.9141 6.3253 41 1 4.4602 -0.8180 5.9166 42 1 5.6643 -0.1439 7.0413 43 1 7.2275 0.8801 2.8375 44 1 6.1831 1.3691 0.6745 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812617972.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:03:05 Heat of formation + Delta-G solvation = -162.562700 kcal Electronic energy + Delta-G solvation = -26307.492146 eV Core-core repulsion = 22382.659944 eV Total energy + Delta-G solvation = -3924.832203 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.10749 -41.30989 -40.29875 -38.17831 -37.70599 -35.64385 -34.94654 -33.38456 -32.43162 -31.63796 -29.48595 -28.49228 -27.75954 -24.71755 -24.05104 -23.55697 -22.69323 -21.45222 -20.96835 -19.55554 -19.24468 -18.56650 -18.04742 -17.61258 -17.40137 -16.79485 -16.75471 -16.29953 -16.02449 -15.86338 -15.57653 -15.29733 -14.90735 -14.72584 -14.70191 -14.44175 -14.05731 -13.88291 -13.62984 -13.52187 -13.32340 -13.13402 -13.02955 -12.92694 -12.82106 -12.27276 -12.13304 -12.04350 -11.98867 -11.88468 -11.79166 -11.64113 -11.46636 -11.38946 -10.79021 -10.73009 -10.22529 -9.38446 -8.31481 -6.36436 -0.46859 0.26644 1.14053 1.20795 1.35753 1.37083 1.48990 1.51170 2.22396 2.35103 2.65296 2.77601 3.03670 3.56140 3.65438 3.73464 3.78737 3.82560 3.92324 4.11469 4.20842 4.25599 4.33690 4.35373 4.38099 4.40582 4.41860 4.52102 4.69046 4.75543 4.79729 4.89654 4.91930 5.00215 5.02232 5.15103 5.19533 5.26702 5.30651 5.35892 5.37493 5.53411 5.58196 6.21198 6.26813 6.30036 6.67741 6.77155 7.28490 8.84280 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.022132 B = 0.002449 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.823294 B =11429.132511 C =11882.590548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.126 4.126 3 C 0.033 3.967 4 H 0.118 0.882 5 O -0.347 6.347 6 C 0.469 3.531 7 O -0.520 6.520 8 C -0.095 4.095 9 C 0.007 3.993 10 C -0.534 4.534 11 H 0.046 0.954 12 C 0.012 3.988 13 N -0.944 5.944 14 Si 0.943 3.057 15 H -0.268 1.268 16 H -0.280 1.280 17 H -0.253 1.253 18 C 0.408 3.592 19 O -0.470 6.470 20 C -0.222 4.222 21 C -0.027 4.027 22 C -0.217 4.217 23 C 0.162 3.838 24 O -0.325 6.325 25 C 0.012 3.988 26 C -0.171 4.171 27 C -0.023 4.023 28 H 0.063 0.937 29 H 0.028 0.972 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.117 0.883 33 H 0.106 0.894 34 H 0.109 0.891 35 H 0.022 0.978 36 H 0.018 0.982 37 H 0.268 0.732 38 H 0.153 0.847 39 H 0.165 0.835 40 H 0.069 0.931 41 H 0.072 0.928 42 H 0.120 0.880 43 H 0.152 0.848 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.098 -17.063 24.441 34.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.163 4.163 3 C -0.022 4.022 4 H 0.136 0.864 5 O -0.264 6.264 6 C 0.314 3.686 7 O -0.409 6.409 8 C -0.132 4.132 9 C -0.031 4.031 10 C -0.572 4.572 11 H 0.065 0.935 12 C -0.186 4.186 13 N -0.584 5.584 14 Si 0.767 3.233 15 H -0.193 1.193 16 H -0.205 1.205 17 H -0.177 1.177 18 C 0.287 3.713 19 O -0.346 6.346 20 C -0.224 4.224 21 C -0.045 4.045 22 C -0.235 4.235 23 C 0.115 3.885 24 O -0.238 6.238 25 C -0.082 4.082 26 C -0.189 4.189 27 C -0.041 4.041 28 H 0.082 0.918 29 H 0.047 0.953 30 H 0.099 0.901 31 H 0.094 0.906 32 H 0.136 0.864 33 H 0.124 0.876 34 H 0.128 0.872 35 H 0.041 0.959 36 H 0.037 0.963 37 H 0.077 0.923 38 H 0.170 0.830 39 H 0.182 0.818 40 H 0.088 0.912 41 H 0.091 0.909 42 H 0.138 0.862 43 H 0.169 0.831 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 18.339 -16.867 24.242 34.763 hybrid contribution -0.936 0.476 0.105 1.055 sum 17.403 -16.391 24.347 34.122 Atomic orbital electron populations 1.21824 0.94261 1.02740 1.01849 1.21935 0.97247 0.91844 1.05297 1.23411 0.94414 0.96956 0.87431 0.86411 1.86670 1.37423 1.63716 1.38555 1.24229 0.78330 0.75048 0.91008 1.90586 1.55223 1.58600 1.36476 1.21354 0.98956 1.00370 0.92534 1.19291 0.92296 0.95725 0.95747 1.21345 1.04283 1.33438 0.98156 0.93536 1.25866 0.99142 0.94327 0.99271 1.70032 1.22221 1.36410 1.29726 0.85755 0.77814 0.79925 0.79800 1.19270 1.20516 1.17664 1.22375 0.89158 0.71893 0.87895 1.90551 1.66305 1.36985 1.40785 1.20041 0.94943 1.13238 0.94141 1.21396 1.00881 0.91531 0.90717 1.21395 0.93407 1.08561 1.00149 1.19602 0.91893 0.91063 0.85922 1.86045 1.37678 1.83218 1.16819 1.23487 0.95733 1.01865 0.87092 1.20457 1.01420 1.06707 0.90351 1.21134 0.93280 0.92013 0.97649 0.91763 0.95322 0.90096 0.90554 0.86443 0.87562 0.87243 0.95931 0.96315 0.92293 0.82986 0.81792 0.91246 0.90914 0.86156 0.83074 0.84283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.39 8.56 71.98 0.62 -2.77 16 2 C -0.13 -2.52 5.40 30.59 0.17 -2.36 16 3 C 0.03 0.86 1.85 29.85 0.06 0.91 16 4 H 0.12 2.84 6.32 -2.39 -0.02 2.82 16 5 O -0.35 -11.54 9.40 -45.19 -0.42 -11.96 16 6 C 0.47 17.15 6.41 71.24 0.46 17.60 16 7 O -0.52 -20.08 13.12 21.98 0.29 -19.79 16 8 C -0.09 -3.76 5.75 29.85 0.17 -3.59 16 9 C 0.01 0.34 3.33 29.85 0.10 0.44 16 10 C -0.53 -30.72 9.66 25.60 0.25 -30.47 16 11 H 0.05 2.86 7.99 -2.91 -0.02 2.84 16 12 C 0.01 0.69 5.47 84.65 0.46 1.15 16 13 N -0.94 -58.99 13.96 21.45 0.30 -58.69 16 14 Si 0.94 45.29 27.47 68.60 1.88 47.17 16 15 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 16 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 17 H -0.25 -11.69 6.54 99.48 0.65 -11.04 16 18 C 0.41 10.41 6.41 27.94 0.18 10.59 16 19 O -0.47 -15.30 16.56 15.24 0.25 -15.05 16 20 C -0.22 -4.32 5.84 -20.15 -0.12 -4.44 16 21 C -0.03 -0.38 8.54 22.44 0.19 -0.19 16 22 C -0.22 -2.47 8.99 22.21 0.20 -2.27 16 23 C 0.16 2.23 6.70 22.67 0.15 2.39 16 24 O -0.33 -3.95 10.48 -89.80 -0.94 -4.89 16 25 C 0.01 0.05 9.81 113.37 1.11 1.16 16 26 C -0.17 -2.57 9.95 22.21 0.22 -2.35 16 27 C -0.02 -0.41 9.57 22.44 0.21 -0.19 16 28 H 0.06 1.47 7.80 -2.39 -0.02 1.45 16 29 H 0.03 0.82 6.06 -2.39 -0.01 0.81 16 30 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 31 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.12 1.55 6.69 -2.38 -0.02 1.53 16 33 H 0.11 4.05 8.14 -2.39 -0.02 4.03 16 34 H 0.11 4.09 8.14 -2.39 -0.02 4.07 16 35 H 0.02 1.10 7.16 -2.38 -0.02 1.08 16 36 H 0.02 0.90 7.53 -2.39 -0.02 0.89 16 37 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 38 H 0.15 1.63 6.02 -2.91 -0.02 1.62 16 39 H 0.16 0.91 6.27 -2.91 -0.02 0.89 16 40 H 0.07 0.19 7.65 -2.39 -0.02 0.17 16 41 H 0.07 0.15 7.65 -2.38 -0.02 0.13 16 42 H 0.12 0.10 8.14 -2.39 -0.02 0.08 16 43 H 0.15 1.79 8.06 -2.91 -0.02 1.77 16 44 H 0.14 2.54 7.64 -2.91 -0.02 2.52 16 Total: -1.00 -74.82 365.83 6.74 -68.08 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: 0.96 Total: 9.53 kcal Atomic # 6 Polarization: -18.82 SS G_CDS: 4.43 Total: -14.40 kcal Atomic # 7 Polarization: -58.99 SS G_CDS: 0.30 Total: -58.69 kcal Atomic # 8 Polarization: -50.87 SS G_CDS: -0.83 Total: -51.70 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 1.88 Total: 47.17 kcal Total: -74.82 6.74 -68.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812617972.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.482 kcal (2) G-P(sol) polarization free energy of solvation -74.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds