Wall clock time and date at job start Tue Mar 31 2020 12:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42889 * 1 3 3 C 1.42899 * 114.00127 * 2 1 4 4 C 1.53000 * 109.47399 * 306.23234 * 3 2 1 5 5 C 1.50702 * 109.46961 * 66.23790 * 3 2 1 6 6 O 1.20829 * 119.99981 * 145.96828 * 5 3 2 7 7 O 1.34228 * 119.99566 * 325.95941 * 5 3 2 8 8 C 1.45208 * 116.99333 * 180.02562 * 7 5 3 9 9 C 1.50708 * 109.46525 * 180.02562 * 8 7 5 10 10 C 1.38302 * 119.92582 * 90.00140 * 9 8 7 11 11 C 1.38106 * 120.06463 * 179.97438 * 10 9 8 12 12 C 1.38875 * 119.92892 * 0.02562 * 11 10 9 13 13 O 1.35758 * 120.06831 * 180.02562 * 12 11 10 14 14 C 1.34836 * 116.99669 * 5.79756 * 13 12 11 15 15 H 1.07996 * 119.99996 * 354.92268 * 14 13 12 16 16 C 1.38649 * 119.99650 * 174.92915 * 14 13 12 17 17 N 1.31558 * 120.00314 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 119.99919 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47057 * 59.99702 * 18 16 14 20 20 H 1.48501 * 109.47061 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.46676 * 299.99754 * 18 16 14 22 22 C 1.38878 * 119.86452 * 0.27473 * 12 11 10 23 23 C 1.38098 * 119.92881 * 359.44992 * 22 12 11 24 24 C 1.53006 * 109.47259 * 186.23385 * 3 2 1 25 25 C 1.53002 * 117.49603 * 14.11472 * 24 3 2 26 26 C 1.53002 * 117.49905 * 305.45562 * 24 3 2 27 27 H 1.08996 * 109.47683 * 59.67361 * 1 2 3 28 28 H 1.08997 * 109.47666 * 179.67470 * 1 2 3 29 29 H 1.09005 * 109.47378 * 299.67085 * 1 2 3 30 30 H 1.08997 * 109.47515 * 179.97438 * 4 3 2 31 31 H 1.08999 * 109.47059 * 300.00274 * 4 3 2 32 32 H 1.09008 * 109.46657 * 59.99936 * 4 3 2 33 33 H 1.09001 * 109.47142 * 60.00583 * 8 7 5 34 34 H 1.08996 * 109.47217 * 299.99833 * 8 7 5 35 35 H 1.07999 * 119.96802 * 359.97438 * 10 9 8 36 36 H 1.07998 * 120.03077 * 180.02562 * 11 10 9 37 37 H 0.97004 * 119.99730 * 180.02562 * 17 16 14 38 38 H 1.07999 * 120.03453 * 179.72489 * 22 12 11 39 39 H 1.08006 * 119.96576 * 180.27476 * 23 22 12 40 40 H 1.08999 * 115.54996 * 159.77940 * 24 3 2 41 41 H 1.09003 * 117.50069 * 0.02562 * 25 24 3 42 42 H 1.09003 * 117.50011 * 145.02060 * 25 24 3 43 43 H 1.08995 * 117.49713 * 214.97908 * 26 24 3 44 44 H 1.09004 * 117.49903 * 0.02562 * 26 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 6 1.4387 2.1182 -1.1635 5 6 1.6914 1.9972 1.3004 6 8 2.4923 2.7560 1.7931 7 8 0.5178 1.7704 1.9111 8 6 0.2784 2.4714 3.1600 9 6 -1.0790 2.0945 3.6952 10 6 -1.2091 1.0116 4.5456 11 6 -2.4516 0.6640 5.0382 12 6 -3.5711 1.4029 4.6784 13 8 -4.7938 1.0640 5.1614 14 6 -4.8374 0.0766 6.0785 15 1 -3.9371 -0.4612 6.3362 16 6 -6.0383 -0.2482 6.6907 17 7 -7.1350 0.4072 6.3771 18 14 -6.0987 -1.6157 7.9619 19 1 -5.1984 -1.2794 9.0939 20 1 -7.4889 -1.7655 8.4620 21 1 -5.6570 -2.8897 7.3397 22 6 -3.4380 2.4860 3.8194 23 6 -2.1920 2.8320 3.3347 24 6 3.5276 1.1881 -0.1566 25 6 4.0891 -0.1625 -0.6056 26 6 4.2744 0.3009 0.8415 27 1 -0.3634 0.5189 -0.8870 28 1 -0.3634 -1.0276 -0.0058 29 1 -0.3634 0.5087 0.8929 30 1 1.8817 3.1141 -1.1633 31 1 1.6693 1.6178 -2.1040 32 1 0.3576 2.2018 -1.0519 33 1 0.3150 3.5468 2.9858 34 1 1.0440 2.1945 3.8847 35 1 -0.3381 0.4372 4.8246 36 1 -2.5525 -0.1815 5.7025 37 1 -7.9750 0.1801 6.8057 38 1 -4.3074 3.0598 3.5342 39 1 -2.0872 3.6769 2.6701 40 1 4.0347 2.0862 -0.5093 41 1 3.3774 -0.9673 -0.7898 42 1 4.9658 -0.1529 -1.2532 43 1 5.2728 0.6153 1.1453 44 1 3.6845 -0.1995 1.6095 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812656170.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:10 Heat of formation + Delta-G solvation = -98.560045 kcal Electronic energy + Delta-G solvation = -26781.554691 eV Core-core repulsion = 22859.497851 eV Total energy + Delta-G solvation = -3922.056839 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.03582 -39.21688 -38.62930 -37.10263 -36.53550 -35.79378 -32.46541 -31.61868 -30.53779 -30.25963 -27.29497 -26.34005 -25.26393 -24.27735 -22.62551 -22.24672 -22.08476 -20.63755 -19.98584 -18.13407 -18.09312 -17.32496 -16.98856 -16.43017 -16.07780 -15.70080 -14.90762 -14.80825 -14.64395 -14.50798 -14.01465 -13.84386 -13.67113 -13.46722 -13.36711 -13.07425 -12.80558 -12.60470 -12.41389 -12.28514 -11.80574 -11.73552 -11.66372 -11.47424 -11.21210 -11.04532 -10.85739 -10.81758 -10.66162 -10.54454 -10.47961 -10.45769 -10.33346 -9.72562 -9.44425 -8.91895 -8.30198 -7.35263 -6.54504 -4.13320 1.89901 2.07809 2.12258 2.77408 3.08535 3.09979 3.12400 3.47309 3.64476 3.89398 4.17733 4.33914 4.46731 4.68301 4.78875 4.88998 4.99917 5.04585 5.13103 5.17301 5.20125 5.23438 5.29606 5.37338 5.47037 5.54872 5.55621 5.62963 5.65895 5.73574 5.74548 5.92139 6.02357 6.07251 6.10241 6.30323 6.48762 6.56539 6.77777 6.80673 6.94163 7.11978 7.24351 7.32868 7.68123 7.72825 7.90069 8.90635 9.58056 10.62801 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.022883 B = 0.002541 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.308737 B =11015.788834 C =11309.043231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 O -0.363 6.363 3 C 0.160 3.840 4 C -0.176 4.176 5 C 0.441 3.559 6 O -0.502 6.502 7 O -0.342 6.342 8 C 0.121 3.879 9 C -0.204 4.204 10 C -0.045 4.045 11 C -0.237 4.237 12 C 0.163 3.837 13 O -0.171 6.171 14 C -0.394 4.394 15 H 0.093 0.907 16 C 0.041 3.959 17 N -0.859 5.859 18 Si 0.942 3.058 19 H -0.269 1.269 20 H -0.277 1.277 21 H -0.269 1.269 22 C -0.196 4.196 23 C -0.050 4.050 24 C -0.143 4.143 25 C -0.158 4.158 26 C -0.166 4.166 27 H 0.046 0.954 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.108 0.892 36 H 0.130 0.870 37 H 0.272 0.728 38 H 0.120 0.880 39 H 0.112 0.888 40 H 0.123 0.877 41 H 0.108 0.892 42 H 0.095 0.905 43 H 0.096 0.904 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.423 0.722 -13.094 21.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 O -0.282 6.282 3 C 0.119 3.881 4 C -0.233 4.233 5 C 0.283 3.717 6 O -0.389 6.389 7 O -0.259 6.259 8 C 0.048 3.952 9 C -0.205 4.205 10 C -0.063 4.063 11 C -0.256 4.256 12 C 0.108 3.892 13 O -0.074 6.074 14 C -0.470 4.470 15 H 0.111 0.889 16 C -0.164 4.164 17 N -0.493 5.493 18 Si 0.766 3.234 19 H -0.194 1.194 20 H -0.202 1.202 21 H -0.194 1.194 22 C -0.215 4.215 23 C -0.068 4.068 24 C -0.161 4.161 25 C -0.195 4.195 26 C -0.203 4.203 27 H 0.064 0.936 28 H 0.107 0.893 29 H 0.103 0.897 30 H 0.094 0.906 31 H 0.103 0.897 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.126 0.874 36 H 0.147 0.853 37 H 0.082 0.918 38 H 0.138 0.862 39 H 0.130 0.870 40 H 0.141 0.859 41 H 0.126 0.874 42 H 0.114 0.886 43 H 0.115 0.885 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 17.231 0.869 -12.871 21.524 hybrid contribution -0.214 -0.328 0.833 0.920 sum 17.017 0.541 -12.038 20.851 Atomic orbital electron populations 1.23357 0.79421 1.03644 1.02567 1.87957 1.21375 1.24449 1.94370 1.20847 0.93782 0.84175 0.89341 1.22391 1.02455 1.00793 0.97674 1.24694 0.80081 0.80174 0.86768 1.90634 1.48587 1.34900 1.64798 1.86821 1.36496 1.64873 1.37725 1.21759 0.95322 0.95606 0.82463 1.18857 0.92955 1.02206 1.06447 1.20621 0.96493 0.94360 0.94834 1.21141 0.92331 1.04368 1.07786 1.19438 0.85871 0.91988 0.91907 1.83979 1.23020 1.49706 1.50668 1.21323 0.96676 1.11534 1.17476 0.88921 1.25322 0.94242 0.98737 0.98107 1.70028 0.99380 1.39135 1.40753 0.85761 0.78023 0.79828 0.79743 1.19395 1.20186 1.19379 1.20184 0.97495 0.99536 1.04279 1.20491 0.91360 0.97866 0.97108 1.22001 0.89813 0.96794 1.07479 1.22963 1.02454 0.96645 0.97420 1.22923 1.01434 1.02694 0.93225 0.93572 0.89258 0.89671 0.90572 0.89665 0.90614 0.91268 0.91295 0.87368 0.85285 0.91788 0.86233 0.86978 0.85874 0.87396 0.88645 0.88518 0.88611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.06 10.12 101.05 1.02 1.08 16 2 O -0.36 -4.25 8.69 -49.43 -0.43 -4.68 16 3 C 0.16 1.78 0.90 -91.77 -0.08 1.70 16 4 C -0.18 -1.53 8.03 37.16 0.30 -1.23 16 5 C 0.44 6.09 6.59 36.01 0.24 6.33 16 6 O -0.50 -7.86 16.01 -18.75 -0.30 -8.16 16 7 O -0.34 -4.98 6.79 -44.50 -0.30 -5.28 16 8 C 0.12 1.79 5.59 36.01 0.20 2.00 16 9 C -0.20 -3.46 5.52 -104.57 -0.58 -4.04 16 10 C -0.04 -0.81 9.69 -39.61 -0.38 -1.19 16 11 C -0.24 -4.99 9.17 -39.39 -0.36 -5.35 16 12 C 0.16 3.81 6.65 -39.11 -0.26 3.55 16 13 O -0.17 -4.75 9.76 0.01 0.00 -4.75 16 14 C -0.39 -10.72 9.49 30.88 0.29 -10.42 16 15 H 0.09 2.32 5.21 -52.49 -0.27 2.05 16 16 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 17 N -0.86 -24.60 13.67 55.48 0.76 -23.84 16 18 Si 0.94 19.99 29.55 -169.99 -5.02 14.97 16 19 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 20 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 21 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 22 C -0.20 -3.98 9.99 -39.40 -0.39 -4.38 16 23 C -0.05 -0.86 9.69 -39.61 -0.38 -1.25 16 24 C -0.14 -1.42 4.48 -90.61 -0.41 -1.82 16 25 C -0.16 -1.35 9.89 -26.69 -0.26 -1.62 16 26 C -0.17 -1.66 9.85 -26.69 -0.26 -1.92 16 27 H 0.05 0.43 6.31 -51.93 -0.33 0.10 16 28 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.09 1.12 4.96 -51.93 -0.26 0.86 16 30 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.66 6.47 -51.92 -0.34 0.32 16 33 H 0.07 0.97 8.08 -51.93 -0.42 0.55 16 34 H 0.07 1.00 8.08 -51.93 -0.42 0.58 16 35 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 36 H 0.13 2.71 5.64 -52.49 -0.30 2.41 16 37 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 38 H 0.12 2.33 8.06 -52.49 -0.42 1.91 16 39 H 0.11 1.62 8.06 -52.48 -0.42 1.20 16 40 H 0.12 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.11 1.00 7.14 -51.93 -0.37 0.63 16 42 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.10 1.10 8.14 -51.93 -0.42 0.67 16 LS Contribution 368.30 15.07 5.55 5.55 Total: -1.00 -30.61 368.30 -7.23 -37.84 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -6.06 Total: 5.93 kcal Atomic # 6 Polarization: -16.16 SS G_CDS: -1.42 Total: -17.58 kcal Atomic # 7 Polarization: -24.60 SS G_CDS: 0.76 Total: -23.84 kcal Atomic # 8 Polarization: -21.84 SS G_CDS: -1.03 Total: -22.87 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.97 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.61 -7.23 -37.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812656170.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.722 kcal (2) G-P(sol) polarization free energy of solvation -30.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds