Wall clock time and date at job start Tue Mar 31 2020 12:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42889 * 1 3 3 C 1.42899 * 114.00127 * 2 1 4 4 C 1.53000 * 109.47399 * 306.23234 * 3 2 1 5 5 C 1.50702 * 109.46961 * 66.23790 * 3 2 1 6 6 O 1.20829 * 119.99981 * 145.96828 * 5 3 2 7 7 O 1.34228 * 119.99566 * 325.95941 * 5 3 2 8 8 C 1.45208 * 116.99333 * 180.02562 * 7 5 3 9 9 C 1.50708 * 109.46525 * 180.02562 * 8 7 5 10 10 C 1.38302 * 119.92582 * 90.00140 * 9 8 7 11 11 C 1.38106 * 120.06463 * 179.97438 * 10 9 8 12 12 C 1.38875 * 119.92892 * 0.02562 * 11 10 9 13 13 O 1.35758 * 120.06831 * 180.02562 * 12 11 10 14 14 C 1.34836 * 116.99669 * 5.79756 * 13 12 11 15 15 H 1.07996 * 119.99996 * 354.92268 * 14 13 12 16 16 C 1.38649 * 119.99650 * 174.92915 * 14 13 12 17 17 N 1.31558 * 120.00314 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 119.99919 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47057 * 59.99702 * 18 16 14 20 20 H 1.48501 * 109.47061 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.46676 * 299.99754 * 18 16 14 22 22 C 1.38878 * 119.86452 * 0.27473 * 12 11 10 23 23 C 1.38098 * 119.92881 * 359.44992 * 22 12 11 24 24 C 1.53006 * 109.47259 * 186.23385 * 3 2 1 25 25 C 1.53002 * 117.49603 * 14.11472 * 24 3 2 26 26 C 1.53002 * 117.49905 * 305.45562 * 24 3 2 27 27 H 1.08996 * 109.47683 * 59.67361 * 1 2 3 28 28 H 1.08997 * 109.47666 * 179.67470 * 1 2 3 29 29 H 1.09005 * 109.47378 * 299.67085 * 1 2 3 30 30 H 1.08997 * 109.47515 * 179.97438 * 4 3 2 31 31 H 1.08999 * 109.47059 * 300.00274 * 4 3 2 32 32 H 1.09008 * 109.46657 * 59.99936 * 4 3 2 33 33 H 1.09001 * 109.47142 * 60.00583 * 8 7 5 34 34 H 1.08996 * 109.47217 * 299.99833 * 8 7 5 35 35 H 1.07999 * 119.96802 * 359.97438 * 10 9 8 36 36 H 1.07998 * 120.03077 * 180.02562 * 11 10 9 37 37 H 0.97004 * 119.99730 * 180.02562 * 17 16 14 38 38 H 1.07999 * 120.03453 * 179.72489 * 22 12 11 39 39 H 1.08006 * 119.96576 * 180.27476 * 23 22 12 40 40 H 1.08999 * 115.54996 * 159.77940 * 24 3 2 41 41 H 1.09003 * 117.50069 * 0.02562 * 25 24 3 42 42 H 1.09003 * 117.50011 * 145.02060 * 25 24 3 43 43 H 1.08995 * 117.49713 * 214.97908 * 26 24 3 44 44 H 1.09004 * 117.49903 * 0.02562 * 26 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 6 1.4387 2.1182 -1.1635 5 6 1.6914 1.9972 1.3004 6 8 2.4923 2.7560 1.7931 7 8 0.5178 1.7704 1.9111 8 6 0.2784 2.4714 3.1600 9 6 -1.0790 2.0945 3.6952 10 6 -1.2091 1.0116 4.5456 11 6 -2.4516 0.6640 5.0382 12 6 -3.5711 1.4029 4.6784 13 8 -4.7938 1.0640 5.1614 14 6 -4.8374 0.0766 6.0785 15 1 -3.9371 -0.4612 6.3362 16 6 -6.0383 -0.2482 6.6907 17 7 -7.1350 0.4072 6.3771 18 14 -6.0987 -1.6157 7.9619 19 1 -5.1984 -1.2794 9.0939 20 1 -7.4889 -1.7655 8.4620 21 1 -5.6570 -2.8897 7.3397 22 6 -3.4380 2.4860 3.8194 23 6 -2.1920 2.8320 3.3347 24 6 3.5276 1.1881 -0.1566 25 6 4.0891 -0.1625 -0.6056 26 6 4.2744 0.3009 0.8415 27 1 -0.3634 0.5189 -0.8870 28 1 -0.3634 -1.0276 -0.0058 29 1 -0.3634 0.5087 0.8929 30 1 1.8817 3.1141 -1.1633 31 1 1.6693 1.6178 -2.1040 32 1 0.3576 2.2018 -1.0519 33 1 0.3150 3.5468 2.9858 34 1 1.0440 2.1945 3.8847 35 1 -0.3381 0.4372 4.8246 36 1 -2.5525 -0.1815 5.7025 37 1 -7.9750 0.1801 6.8057 38 1 -4.3074 3.0598 3.5342 39 1 -2.0872 3.6769 2.6701 40 1 4.0347 2.0862 -0.5093 41 1 3.3774 -0.9673 -0.7898 42 1 4.9658 -0.1529 -1.2532 43 1 5.2728 0.6153 1.1453 44 1 3.6845 -0.1995 1.6095 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812656170.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:09 Heat of formation + Delta-G solvation = -114.742146 kcal Electronic energy + Delta-G solvation = -26782.256399 eV Core-core repulsion = 22859.497851 eV Total energy + Delta-G solvation = -3922.758548 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.07154 -40.84636 -39.66294 -38.54099 -37.69763 -36.81863 -34.37810 -32.51413 -31.99420 -31.82039 -28.12448 -27.92973 -26.85691 -25.30526 -23.70997 -23.48132 -23.07229 -22.17780 -20.90408 -19.91107 -19.13522 -18.94234 -18.18510 -17.54691 -17.00756 -16.69782 -16.44287 -16.17491 -16.05485 -15.61300 -15.57752 -15.24500 -14.94331 -14.72409 -14.45925 -14.38568 -14.07045 -13.84415 -13.55842 -13.36283 -13.13053 -13.09151 -12.62650 -12.55851 -12.45206 -12.42510 -12.32198 -12.15832 -12.00146 -11.73345 -11.61179 -11.25503 -11.22966 -11.18853 -10.84745 -10.61499 -9.86362 -9.06110 -8.49933 -6.18427 0.40782 0.53277 1.02148 1.35240 1.43781 1.51095 1.65954 2.16174 2.62593 2.76110 2.90259 3.12580 3.37982 3.44149 3.56120 3.74890 3.85033 3.88633 4.06602 4.11440 4.16187 4.26850 4.31383 4.38231 4.46633 4.52343 4.60192 4.67904 4.69583 4.71914 4.80892 4.96659 4.97818 5.06928 5.10349 5.11638 5.18828 5.19968 5.32983 5.37259 5.50313 5.64168 5.66874 5.94925 5.98772 6.09447 6.62894 6.94520 7.72013 8.72426 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.022883 B = 0.002541 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.308737 B =11015.788834 C =11309.043231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.004 3.996 2 O -0.370 6.370 3 C 0.158 3.842 4 C -0.173 4.173 5 C 0.440 3.560 6 O -0.522 6.522 7 O -0.345 6.345 8 C 0.121 3.879 9 C -0.179 4.179 10 C -0.045 4.045 11 C -0.244 4.244 12 C 0.127 3.873 13 O -0.225 6.225 14 C -0.416 4.416 15 H 0.103 0.897 16 C -0.019 4.019 17 N -0.917 5.917 18 Si 1.017 2.983 19 H -0.258 1.258 20 H -0.272 1.272 21 H -0.257 1.257 22 C -0.203 4.203 23 C -0.040 4.040 24 C -0.151 4.151 25 C -0.140 4.140 26 C -0.181 4.181 27 H 0.064 0.936 28 H 0.096 0.904 29 H 0.065 0.935 30 H 0.083 0.917 31 H 0.103 0.897 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.075 0.925 35 H 0.136 0.864 36 H 0.123 0.877 37 H 0.274 0.726 38 H 0.120 0.880 39 H 0.150 0.850 40 H 0.136 0.864 41 H 0.101 0.899 42 H 0.119 0.881 43 H 0.106 0.894 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.379 0.651 -14.631 25.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 O -0.289 6.289 3 C 0.116 3.884 4 C -0.230 4.230 5 C 0.283 3.717 6 O -0.410 6.410 7 O -0.262 6.262 8 C 0.048 3.952 9 C -0.180 4.180 10 C -0.063 4.063 11 C -0.263 4.263 12 C 0.075 3.925 13 O -0.131 6.131 14 C -0.492 4.492 15 H 0.121 0.879 16 C -0.218 4.218 17 N -0.555 5.555 18 Si 0.836 3.164 19 H -0.182 1.182 20 H -0.196 1.196 21 H -0.181 1.181 22 C -0.222 4.222 23 C -0.058 4.058 24 C -0.169 4.169 25 C -0.176 4.176 26 C -0.218 4.218 27 H 0.083 0.917 28 H 0.114 0.886 29 H 0.083 0.917 30 H 0.102 0.898 31 H 0.122 0.878 32 H 0.094 0.906 33 H 0.103 0.897 34 H 0.094 0.906 35 H 0.154 0.846 36 H 0.141 0.859 37 H 0.083 0.917 38 H 0.138 0.862 39 H 0.168 0.832 40 H 0.154 0.846 41 H 0.119 0.881 42 H 0.137 0.863 43 H 0.125 0.875 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 20.244 0.809 -14.441 24.879 hybrid contribution -0.794 -0.158 1.097 1.363 sum 19.450 0.651 -13.344 23.596 Atomic orbital electron populations 1.23378 0.79206 1.04134 1.02376 1.87963 1.21667 1.24950 1.94274 1.21075 0.94713 0.84032 0.88559 1.22420 1.02337 1.01006 0.97269 1.25370 0.79263 0.79821 0.87236 1.90625 1.49000 1.35980 1.65427 1.86852 1.37248 1.64816 1.37308 1.21705 0.93749 0.96578 0.83158 1.19202 0.94094 1.00428 1.04233 1.20918 0.96130 0.94824 0.94391 1.21223 0.92953 1.04132 1.07961 1.19982 0.85691 0.93646 0.93145 1.83952 1.25264 1.51265 1.52610 1.21802 0.97481 1.11977 1.17961 0.87947 1.26579 0.93529 1.01432 1.00225 1.70170 1.00169 1.41935 1.43197 0.84668 0.78346 0.76519 0.76848 1.18210 1.19609 1.18082 1.20439 0.99056 0.98883 1.03868 1.20871 0.89947 0.98507 0.96518 1.22144 0.89063 0.97939 1.07759 1.23007 1.02765 0.95388 0.96469 1.22939 1.01750 1.03441 0.93643 0.91706 0.88594 0.91724 0.89791 0.87821 0.90620 0.89714 0.90641 0.84618 0.85920 0.91704 0.86162 0.83224 0.84644 0.88086 0.86275 0.87522 0.90614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.08 10.12 113.37 1.15 1.23 16 2 O -0.37 -7.86 8.69 -135.40 -1.18 -9.03 16 3 C 0.16 3.10 0.90 -11.54 -0.01 3.09 16 4 C -0.17 -2.46 8.03 71.98 0.58 -1.88 16 5 C 0.44 11.10 6.59 71.24 0.47 11.57 16 6 O -0.52 -15.15 16.01 21.95 0.35 -14.80 16 7 O -0.35 -9.15 6.79 -46.38 -0.32 -9.47 16 8 C 0.12 3.21 5.59 71.24 0.40 3.60 16 9 C -0.18 -5.63 5.52 -19.83 -0.11 -5.74 16 10 C -0.04 -1.54 9.69 22.25 0.22 -1.32 16 11 C -0.24 -10.36 9.17 22.39 0.21 -10.16 16 12 C 0.13 6.13 6.65 22.58 0.15 6.28 16 13 O -0.22 -13.22 9.76 -22.89 -0.22 -13.45 16 14 C -0.42 -23.75 9.49 67.92 0.64 -23.10 16 15 H 0.10 5.34 5.21 -2.91 -0.02 5.33 16 16 C -0.02 -1.09 5.49 84.83 0.47 -0.62 16 17 N -0.92 -55.33 13.67 21.61 0.30 -55.04 16 18 Si 1.02 42.01 29.55 68.60 2.03 44.04 16 19 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 20 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 21 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 22 C -0.20 -8.31 9.99 22.39 0.22 -8.09 16 23 C -0.04 -1.31 9.69 22.25 0.22 -1.10 16 24 C -0.15 -2.60 4.48 -10.79 -0.05 -2.65 16 25 C -0.14 -2.00 9.89 30.62 0.30 -1.70 16 26 C -0.18 -3.29 9.85 30.62 0.30 -2.99 16 27 H 0.06 1.03 6.31 -2.39 -0.02 1.02 16 28 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.06 1.57 4.96 -2.38 -0.01 1.56 16 30 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.07 1.08 6.47 -2.38 -0.02 1.06 16 33 H 0.08 2.05 8.08 -2.39 -0.02 2.03 16 34 H 0.08 1.96 8.08 -2.39 -0.02 1.94 16 35 H 0.14 3.93 8.06 -2.91 -0.02 3.90 16 36 H 0.12 5.29 5.64 -2.91 -0.02 5.27 16 37 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 38 H 0.12 4.81 8.06 -2.91 -0.02 4.78 16 39 H 0.15 3.76 8.06 -2.91 -0.02 3.74 16 40 H 0.14 1.98 8.14 -2.39 -0.02 1.96 16 41 H 0.10 1.62 7.14 -2.39 -0.02 1.60 16 42 H 0.12 1.15 8.14 -2.39 -0.02 1.14 16 43 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 44 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -70.19 368.30 7.12 -63.07 By element: Atomic # 1 Polarization: 27.24 SS G_CDS: 1.01 Total: 28.25 kcal Atomic # 6 Polarization: -38.72 SS G_CDS: 5.15 Total: -33.57 kcal Atomic # 7 Polarization: -55.33 SS G_CDS: 0.30 Total: -55.04 kcal Atomic # 8 Polarization: -45.38 SS G_CDS: -1.36 Total: -46.75 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.04 kcal Total: -70.19 7.12 -63.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812656170.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.672 kcal (2) G-P(sol) polarization free energy of solvation -70.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds