Wall clock time and date at job start Tue Mar 31 2020 12:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42901 * 109.47071 * 2 1 4 4 C 1.50700 * 109.47221 * 239.99959 * 2 1 3 5 5 O 1.20819 * 119.99975 * 265.00173 * 4 2 1 6 6 O 1.34234 * 119.99843 * 84.99680 * 4 2 1 7 7 C 1.45199 * 116.99716 * 179.97438 * 6 4 2 8 8 C 1.50707 * 109.46809 * 180.02562 * 7 6 4 9 9 C 1.38302 * 119.93126 * 269.73064 * 8 7 6 10 10 C 1.38098 * 120.06580 * 179.72723 * 9 8 7 11 11 C 1.38867 * 119.93201 * 0.56678 * 10 9 8 12 12 O 1.35754 * 120.07128 * 179.68168 * 11 10 9 13 13 C 1.34833 * 117.00377 * 174.48859 * 12 11 10 14 14 H 1.08001 * 119.99438 * 5.05591 * 13 12 11 15 15 C 1.38652 * 120.00133 * 185.06295 * 13 12 11 16 16 N 1.31558 * 120.00047 * 180.02562 * 15 13 12 17 17 Si 1.86798 * 119.99998 * 359.97438 * 15 13 12 18 18 H 1.48510 * 109.46904 * 90.00715 * 17 15 13 19 19 H 1.48499 * 109.47217 * 210.00164 * 17 15 13 20 20 H 1.48496 * 109.47505 * 330.00764 * 17 15 13 21 21 C 1.38879 * 119.86492 * 359.70856 * 11 10 9 22 22 C 1.38097 * 119.92655 * 359.97438 * 21 11 10 23 23 C 1.53003 * 109.47260 * 119.99964 * 2 1 3 24 24 C 1.53778 * 113.61476 * 179.97438 * 23 2 1 25 25 C 1.53786 * 87.07948 * 139.97983 * 24 23 2 26 26 C 1.53781 * 87.17409 * 334.52562 * 25 24 23 27 27 H 1.08997 * 109.47348 * 299.99844 * 1 2 3 28 28 H 1.08996 * 109.47225 * 60.00188 * 1 2 3 29 29 H 1.09000 * 109.47255 * 179.97438 * 1 2 3 30 30 H 0.96699 * 114.00300 * 180.02562 * 3 2 1 31 31 H 1.08993 * 109.47397 * 300.00468 * 7 6 4 32 32 H 1.09003 * 109.46774 * 60.00522 * 7 6 4 33 33 H 1.08003 * 119.96545 * 359.97438 * 9 8 7 34 34 H 1.08004 * 120.03018 * 180.26945 * 10 9 8 35 35 H 0.96997 * 120.00159 * 179.97438 * 16 15 13 36 36 H 1.08000 * 120.03850 * 179.97438 * 21 11 10 37 37 H 1.08005 * 119.96551 * 180.02562 * 22 21 11 38 38 H 1.09001 * 112.90546 * 48.74875 * 23 2 1 39 39 H 1.09004 * 113.61551 * 25.43634 * 24 23 2 40 40 H 1.08997 * 113.61940 * 254.52988 * 24 23 2 41 41 H 1.08998 * 113.61364 * 89.11723 * 25 24 23 42 42 H 1.08998 * 113.61512 * 219.93381 * 25 24 23 43 43 H 1.08999 * 113.61542 * 140.02012 * 26 25 24 44 44 H 1.09004 * 113.61476 * 270.92454 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.3197 -1.8827 -1.1762 6 8 2.1605 -0.0408 -2.3867 7 6 2.6507 -0.7886 -3.5307 8 6 2.7287 0.1212 -4.7296 9 6 1.6408 0.2440 -5.5747 10 6 1.7072 1.0812 -6.6709 11 6 2.8720 1.7912 -6.9309 12 8 2.9427 2.6100 -8.0114 13 6 4.0583 3.3558 -8.1424 14 1 4.8788 3.2258 -7.4523 15 6 4.1521 4.2896 -9.1631 16 7 5.2409 5.0169 -9.2912 17 14 2.7332 4.5139 -10.3570 18 1 1.8042 5.5475 -9.8332 19 1 3.2601 4.9453 -11.6767 20 1 2.0070 3.2277 -10.5103 21 6 3.9648 1.6614 -6.0837 22 6 3.8898 0.8276 -4.9854 23 6 2.0401 -0.7212 1.2493 24 6 3.5738 -0.7773 1.3451 25 6 3.4111 -0.5054 2.8500 26 6 2.0727 0.1692 2.5059 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 2.9703 1.4237 -0.0004 31 1 3.6423 -1.1831 -3.3092 32 1 1.9708 -1.6136 -3.7438 33 1 0.7369 -0.3124 -5.3748 34 1 0.8558 1.1800 -7.3280 35 1 5.3066 5.6699 -10.0054 36 1 4.8722 2.2119 -6.2835 37 1 4.7391 0.7265 -4.3259 38 1 1.5573 -1.6853 1.4093 39 1 4.0747 0.0279 0.8076 40 1 3.9897 -1.7597 1.1214 41 1 3.3029 -1.4103 3.4480 42 1 4.1556 0.1814 3.2526 43 1 1.2776 -0.0495 3.2186 44 1 2.1639 1.2328 2.2852 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812667868.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:15 Heat of formation + Delta-G solvation = -135.192992 kcal Electronic energy + Delta-G solvation = -26449.095651 eV Core-core repulsion = 22525.450287 eV Total energy + Delta-G solvation = -3923.645363 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.10089 -40.98366 -40.11428 -38.62943 -37.38959 -36.98265 -34.51895 -32.68763 -32.16462 -31.87880 -28.10292 -27.19794 -26.52642 -26.31214 -24.49523 -23.78294 -22.15780 -21.63727 -20.27977 -19.88898 -19.39281 -19.18711 -18.09395 -17.76343 -17.35071 -16.64999 -16.48531 -16.21977 -15.86296 -15.70497 -15.41920 -15.12800 -14.67989 -14.39993 -14.36900 -14.15370 -14.04260 -13.62981 -13.59361 -13.42646 -13.26580 -13.13110 -13.08665 -12.74861 -12.67705 -12.53033 -12.34214 -12.23683 -11.96804 -11.72467 -11.58965 -11.39208 -11.32000 -11.09133 -10.95296 -10.82348 -9.89187 -9.16351 -8.52582 -6.25996 0.35383 0.49869 1.01894 1.31669 1.34908 1.51540 1.68764 2.26656 2.72991 2.97650 3.05855 3.10311 3.37110 3.55133 3.63161 3.78508 3.85541 3.86065 3.98485 4.08034 4.11055 4.18722 4.25037 4.35217 4.50251 4.68792 4.69418 4.72927 4.77137 4.83462 4.87170 4.92055 5.05220 5.11565 5.12027 5.15201 5.25336 5.26845 5.37893 5.49556 5.56424 5.62155 5.73687 5.83610 6.13873 6.38069 6.72129 6.81130 7.52501 8.58655 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.024626 B = 0.002377 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.756363 B =11776.904118 C =12032.971898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.159 3.841 3 O -0.540 6.540 4 C 0.435 3.565 5 O -0.522 6.522 6 O -0.350 6.350 7 C 0.124 3.876 8 C -0.173 4.173 9 C -0.044 4.044 10 C -0.193 4.193 11 C 0.133 3.867 12 O -0.239 6.239 13 C -0.402 4.402 14 H 0.083 0.917 15 C 0.012 3.988 16 N -0.920 5.920 17 Si 0.971 3.029 18 H -0.265 1.265 19 H -0.267 1.267 20 H -0.261 1.261 21 C -0.239 4.239 22 C -0.047 4.047 23 C -0.126 4.126 24 C -0.148 4.148 25 C -0.134 4.134 26 C -0.121 4.121 27 H 0.098 0.902 28 H 0.065 0.935 29 H 0.086 0.914 30 H 0.389 0.611 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.155 0.845 34 H 0.136 0.864 35 H 0.286 0.714 36 H 0.114 0.886 37 H 0.136 0.864 38 H 0.107 0.893 39 H 0.079 0.921 40 H 0.061 0.939 41 H 0.087 0.913 42 H 0.077 0.923 43 H 0.082 0.918 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.725 -12.381 23.133 27.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.117 3.883 3 O -0.348 6.348 4 C 0.278 3.722 5 O -0.411 6.411 6 O -0.267 6.267 7 C 0.052 3.948 8 C -0.174 4.174 9 C -0.062 4.062 10 C -0.212 4.212 11 C 0.083 3.917 12 O -0.146 6.146 13 C -0.478 4.478 14 H 0.101 0.899 15 C -0.187 4.187 16 N -0.560 5.560 17 Si 0.793 3.207 18 H -0.190 1.190 19 H -0.192 1.192 20 H -0.186 1.186 21 C -0.258 4.258 22 C -0.066 4.066 23 C -0.144 4.144 24 C -0.186 4.186 25 C -0.171 4.171 26 C -0.158 4.158 27 H 0.116 0.884 28 H 0.084 0.916 29 H 0.105 0.895 30 H 0.239 0.761 31 H 0.098 0.902 32 H 0.105 0.895 33 H 0.172 0.828 34 H 0.154 0.846 35 H 0.095 0.905 36 H 0.132 0.868 37 H 0.154 0.846 38 H 0.126 0.874 39 H 0.097 0.903 40 H 0.080 0.920 41 H 0.106 0.894 42 H 0.096 0.904 43 H 0.100 0.900 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -9.288 -12.399 22.801 27.566 hybrid contribution 1.001 0.142 -1.020 1.436 sum -8.287 -12.257 21.780 26.331 Atomic orbital electron populations 1.21822 0.88852 1.04110 1.04990 1.21182 0.97452 0.82417 0.87278 1.86631 1.28292 1.23601 1.96254 1.25348 0.74319 0.86609 0.85900 1.90637 1.46595 1.18125 1.85769 1.86723 1.76358 1.44649 1.18928 1.21714 1.00401 0.92067 0.80646 1.19289 0.95462 1.04637 0.97985 1.20960 0.98027 0.95299 0.91882 1.20513 0.96473 1.02258 1.01932 1.19728 0.94921 0.90565 0.86507 1.83524 1.40891 1.50363 1.39799 1.20728 0.93160 1.17339 1.16602 0.89929 1.25296 1.00276 0.94081 0.99077 1.69723 1.28468 1.23748 1.34095 0.85219 0.78388 0.79422 0.77717 1.19023 1.19174 1.18570 1.21267 0.99638 1.05687 0.99211 1.20921 0.97913 0.92869 0.94847 1.23260 0.97272 1.00540 0.93375 1.23013 0.95173 1.01955 0.98446 1.22773 0.97938 1.01380 0.95028 1.22972 0.98212 0.99679 0.94974 0.88359 0.91596 0.89487 0.76103 0.90219 0.89489 0.82760 0.84649 0.90453 0.86843 0.84618 0.87443 0.90270 0.91994 0.89430 0.90435 0.89966 0.88821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 8.82 71.98 0.63 -1.47 16 2 C 0.16 2.81 0.95 -11.54 -0.01 2.80 16 3 O -0.54 -9.94 11.34 -135.70 -1.54 -11.48 16 4 C 0.44 10.14 6.36 71.24 0.45 10.60 16 5 O -0.52 -13.89 15.72 21.99 0.35 -13.55 16 6 O -0.35 -9.25 9.96 -46.51 -0.46 -9.72 16 7 C 0.12 3.18 5.59 71.24 0.40 3.58 16 8 C -0.17 -5.33 5.52 -19.83 -0.11 -5.44 16 9 C -0.04 -1.34 9.69 22.25 0.22 -1.13 16 10 C -0.19 -7.21 9.99 22.39 0.22 -6.98 16 11 C 0.13 6.11 6.65 22.57 0.15 6.26 16 12 O -0.24 -12.79 8.59 -22.81 -0.20 -12.99 16 13 C -0.40 -23.44 9.95 67.92 0.68 -22.77 16 14 H 0.08 5.04 5.44 -2.91 -0.02 5.02 16 15 C 0.01 0.67 5.49 84.83 0.47 1.13 16 16 N -0.92 -54.48 13.96 21.61 0.30 -54.18 16 17 Si 0.97 44.85 28.62 68.60 1.96 46.81 16 18 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 19 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 20 H -0.26 -12.02 7.11 99.48 0.71 -11.31 16 21 C -0.24 -10.37 9.17 22.39 0.21 -10.16 16 22 C -0.05 -1.65 9.69 22.25 0.22 -1.43 16 23 C -0.13 -1.79 2.54 -10.17 -0.03 -1.82 16 24 C -0.15 -2.13 6.70 31.12 0.21 -1.92 16 25 C -0.13 -1.42 8.07 31.12 0.25 -1.17 16 26 C -0.12 -1.31 7.50 31.21 0.23 -1.07 16 27 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.39 5.49 7.47 -74.06 -0.55 4.93 16 31 H 0.08 1.92 8.08 -2.39 -0.02 1.90 16 32 H 0.09 1.99 8.08 -2.39 -0.02 1.97 16 33 H 0.15 3.56 8.06 -2.91 -0.02 3.54 16 34 H 0.14 4.59 8.06 -2.91 -0.02 4.57 16 35 H 0.29 15.49 8.31 -92.71 -0.77 14.72 16 36 H 0.11 5.39 5.64 -2.91 -0.02 5.37 16 37 H 0.14 3.97 8.06 -2.91 -0.02 3.94 16 38 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.08 1.08 6.69 -2.38 -0.02 1.06 16 40 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 43 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 44 H 0.09 1.08 6.98 -2.38 -0.02 1.07 16 Total: -1.00 -68.22 368.19 5.07 -63.16 By element: Atomic # 1 Polarization: 22.47 SS G_CDS: 0.47 Total: 22.94 kcal Atomic # 6 Polarization: -35.18 SS G_CDS: 4.19 Total: -30.99 kcal Atomic # 7 Polarization: -54.48 SS G_CDS: 0.30 Total: -54.18 kcal Atomic # 8 Polarization: -45.88 SS G_CDS: -1.85 Total: -47.73 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 1.96 Total: 46.81 kcal Total: -68.22 5.07 -63.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812667868.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.038 kcal (2) G-P(sol) polarization free energy of solvation -68.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds